View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21049_low_5 (Length: 236)

Name: NF21049_low_5
Description: NF21049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21049_low_5
NF21049_low_5
[»] chr3 (12 HSPs)
chr3 (88-236)||(2549995-2550142)
chr3 (9-86)||(2555172-2555249)
chr3 (151-236)||(19882089-19882174)
chr3 (151-236)||(31685135-31685220)
chr3 (151-236)||(37982407-37982492)
chr3 (151-236)||(53973264-53973349)
chr3 (157-236)||(12538620-12538698)
chr3 (157-236)||(17681825-17681903)
chr3 (157-236)||(24761882-24761961)
chr3 (157-236)||(24815973-24816052)
chr3 (157-207)||(53027736-53027786)
chr3 (157-232)||(53352745-53352820)
[»] chr8 (5 HSPs)
chr8 (151-236)||(14677999-14678084)
chr8 (151-236)||(5657829-5657914)
chr8 (151-236)||(31100850-31100935)
chr8 (157-236)||(27541543-27541621)
chr8 (157-207)||(5662652-5662702)
[»] chr7 (5 HSPs)
chr7 (151-236)||(43071360-43071445)
chr7 (151-236)||(1262146-1262231)
chr7 (151-236)||(26909959-26910044)
chr7 (151-236)||(48849785-48849870)
chr7 (9-62)||(6254003-6254057)
[»] chr5 (5 HSPs)
chr5 (151-236)||(9043860-9043945)
chr5 (151-236)||(22009506-22009591)
chr5 (151-236)||(30442525-30442610)
chr5 (151-236)||(7473467-7473552)
chr5 (157-207)||(22004441-22004491)
[»] chr2 (8 HSPs)
chr2 (151-236)||(23348958-23349043)
chr2 (151-236)||(12741746-12741831)
chr2 (151-236)||(18355291-18355376)
chr2 (151-236)||(10328869-10328955)
chr2 (151-236)||(1615893-1615977)
chr2 (83-150)||(22625294-22625362)
chr2 (157-209)||(24454599-24454651)
chr2 (9-71)||(22625193-22625254)
[»] chr4 (1 HSPs)
chr4 (151-236)||(29863339-29863424)
[»] scaffold0596 (1 HSPs)
scaffold0596 (151-236)||(712-797)
[»] scaffold0035 (1 HSPs)
scaffold0035 (151-236)||(35121-35206)
[»] chr6 (7 HSPs)
chr6 (151-236)||(33045409-33045494)
chr6 (165-236)||(10092570-10092641)
chr6 (157-236)||(8976462-8976541)
chr6 (9-82)||(826596-826671)
chr6 (9-82)||(21762211-21762286)
chr6 (79-152)||(21762113-21762188)
chr6 (182-236)||(3065756-3065809)
[»] scaffold0096 (1 HSPs)
scaffold0096 (157-236)||(27468-27546)
[»] scaffold0045 (1 HSPs)
scaffold0045 (151-233)||(11612-11694)


Alignment Details
Target: chr3 (Bit Score: 117; Significance: 1e-59; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 88 - 236
Target Start/End: Complemental strand, 2550142 - 2549995
Alignment:
Q  88 aatgcaaaggctgtgggaggaaaatttaaaaattgaatcagcttgctgagtaggaaagcactaactcatattagatcaaaggatgagatgcatgcttagc 187  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||    
T  2550142 aatgcaaaggctgtgggaggaaagtttaaaaattgaatcagcttgctgagtaggaaagcactaactcagattaaatcaaaggatgagatgcatgcttagc 2550043  T
Q  188 caaatgatgagatctaacggcctctcttgttttggagccaaaaccattt 236  Q
    |||||||| ||||| ||||||||| |||||||||||||||||| |||||    
T  2550042 caaatgat-agatccaacggcctcccttgttttggagccaaaatcattt 2549995  T

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Target: chr3; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 9 - 86
Target Start/End: Complemental strand, 2555249 - 2555172
Alignment:
Q  9 gaataatatgtgcatgagaagaataacaatcacattggaaacatagaaatgaggatagggtattaaatgtcatcggca 86  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  2555249 gaataatatgtgcatgagaagaataacaatcatattggaaacatagaaatgaggatagggtattaaatgtcatcggca 2555172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 151 - 236
Target Start/End: Original strand, 19882089 - 19882174
Alignment:
Q  151 actcatattagatcaaaggatgagatgcatgcttagccaaatgatgagatctaacggcctctcttgttttggagccaaaaccattt 236  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||    
T  19882089 actcagattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacggtctcccttgttttggagccaaaaccattt 19882174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 151 - 236
Target Start/End: Complemental strand, 31685220 - 31685135
Alignment:
Q  151 actcatattagatcaaaggatgagatgcatgcttagccaaatgatgagatctaacggcctctcttgttttggagccaaaaccattt 236  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||  ||||||||| ||| ||||||||||||||||||||    
T  31685220 actcagattagatcaaaggatgagatgcatgcttagccaaatgatgagattcaacggcctcccttattttggagccaaaaccattt 31685135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 151 - 236
Target Start/End: Complemental strand, 37982492 - 37982407
Alignment:
Q  151 actcatattagatcaaaggatgagatgcatgcttagccaaatgatgagatctaacggcctctcttgttttggagccaaaaccattt 236  Q
    ||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||    
T  37982492 actcagattagattaaaggatgagatgcatgcttagccaaatgatgagatccaacggtctcccttgttttggagccaaaaccattt 37982407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 151 - 236
Target Start/End: Original strand, 53973264 - 53973349
Alignment:
Q  151 actcatattagatcaaaggatgagatgcatgcttagccaaatgatgagatctaacggcctctcttgttttggagccaaaaccattt 236  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||    
T  53973264 actcagattagatcaaaggatgagatgcaggcttagccaaatgatgagatccaacggcctcccttgatttggagccaaaaccattt 53973349  T

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Target: chr3; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 157 - 236
Target Start/End: Original strand, 12538620 - 12538698
Alignment:
Q  157 attagatcaaaggatgagatgcatgcttagccaaatgatgagatctaacggcctctcttgttttggagccaaaaccattt 236  Q
    |||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||    
T  12538620 attagatcaaaggatgtgatgcatgcttagccaaatgatgagatccaacggcctcccttg-tttggagccaaaaccattt 12538698  T

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Target: chr3; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 157 - 236
Target Start/End: Complemental strand, 17681903 - 17681825
Alignment:
Q  157 attagatcaaaggatgagatgcatgcttagccaaatgatgagatctaacggcctctcttgttttggagccaaaaccattt 236  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| ||||||| | |||| |||||||||||||||||||    
T  17681903 attagatcaaaggatgagatgcatgcttaaccaaatgatgagatccaacggccccccttg-tttggagccaaaaccattt 17681825  T

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Target: chr3; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 157 - 236
Target Start/End: Original strand, 24761882 - 24761961
Alignment:
Q  157 attagatcaaaggatgagatgcatgcttagccaaatgatgagatctaacggcctctcttgttttggagccaaaaccattt 236  Q
    ||||||||||||||||||||||||||| ||||||||||||||||| ||||| |    |||||||||||||||||||||||    
T  24761882 attagatcaaaggatgagatgcatgctgagccaaatgatgagatccaacggtcagcattgttttggagccaaaaccattt 24761961  T

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Target: chr3; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 157 - 236
Target Start/End: Complemental strand, 24816052 - 24815973
Alignment:
Q  157 attagatcaaaggatgagatgcatgcttagccaaatgatgagatctaacggcctctcttgttttggagccaaaaccattt 236  Q
    ||||||||||||||||||||||||||| ||||||||||||||||| |||||||    | |||||||||||||||||||||    
T  24816052 attagatcaaaggatgagatgcatgctgagccaaatgatgagatccaacggccagcatcgttttggagccaaaaccattt 24815973  T

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Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 157 - 207
Target Start/End: Original strand, 53027736 - 53027786
Alignment:
Q  157 attagatcaaaggatgagatgcatgcttagccaaatgatgagatctaacgg 207  Q
    ||||||||||||||||||||||||||| ||||||||||||||||| |||||    
T  53027736 attagatcaaaggatgagatgcatgctgagccaaatgatgagatccaacgg 53027786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 232
Target Start/End: Original strand, 53352745 - 53352820
Alignment:
Q  157 attagatcaaaggatgagatgcatgcttagccaaatgatgagatctaacggcctctcttgttttggagccaaaacc 232  Q
    |||| ||||||||||||||||||  || ||||||||||||||||| ||||| |    | |||||||||||||||||    
T  53352745 attaaatcaaaggatgagatgcacactgagccaaatgatgagatccaacggtcagcatcgttttggagccaaaacc 53352820  T

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Target: chr8 (Bit Score: 74; Significance: 4e-34; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 151 - 236
Target Start/End: Original strand, 14677999 - 14678084
Alignment:
Q  151 actcatattagatcaaaggatgagatgcatgcttagccaaatgatgagatctaacggcctctcttgttttggagccaaaaccattt 236  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  14677999 actcagattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacggcctcccttgttttggagccaaaaccattt 14678084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 151 - 236
Target Start/End: Complemental strand, 5657914 - 5657829
Alignment:
Q  151 actcatattagatcaaaggatgagatgcatgcttagccaaatgatgagatctaacggcctctcttgttttggagccaaaaccattt 236  Q
    ||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||| ||||    
T  5657914 actcagattagatcaaaggatgagatgcatgcttaaccaaatgatgagatccaacggcctcccttgttttggagccaaaactattt 5657829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 151 - 236
Target Start/End: Original strand, 31100850 - 31100935
Alignment:
Q  151 actcatattagatcaaaggatgagatgcatgcttagccaaatgatgagatctaacggcctctcttgttttggagccaaaaccattt 236  Q
    ||||| |||||||||||||||||||| |||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  31100850 actcagattagatcaaaggatgagatacatgcttaaccaaatgatgagatcgaacggcctcccttgttttggagccaaaaccattt 31100935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 157 - 236
Target Start/End: Original strand, 27541543 - 27541621
Alignment:
Q  157 attagatcaaaggatgagatgcatgcttagccaaatgatgagatctaacggcctctcttgttttggagccaaaaccattt 236  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||| || |||| |||||||||||| ||||||    
T  27541543 attagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacggcgtcccttg-tttggagccaaagccattt 27541621  T

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Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 157 - 207
Target Start/End: Complemental strand, 5662702 - 5662652
Alignment:
Q  157 attagatcaaaggatgagatgcatgcttagccaaatgatgagatctaacgg 207  Q
    |||| |||||||||||||||| |||| ||||||||||||||||||||||||    
T  5662702 attaaatcaaaggatgagatgaatgcctagccaaatgatgagatctaacgg 5662652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 74; Significance: 4e-34; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 151 - 236
Target Start/End: Original strand, 43071360 - 43071445
Alignment:
Q  151 actcatattagatcaaaggatgagatgcatgcttagccaaatgatgagatctaacggcctctcttgttttggagccaaaaccattt 236  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  43071360 actcagattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacggcctcccttgttttggagccaaaaccattt 43071445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 151 - 236
Target Start/End: Complemental strand, 1262231 - 1262146
Alignment:
Q  151 actcatattagatcaaaggatgagatgcatgcttagccaaatgatgagatctaacggcctctcttgttttggagccaaaaccattt 236  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||    
T  1262231 actcagattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacggcttcccttgttttggagccaaaaccattt 1262146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 151 - 236
Target Start/End: Original strand, 26909959 - 26910044
Alignment:
Q  151 actcatattagatcaaaggatgagatgcatgcttagccaaatgatgagatctaacggcctctcttgttttggagccaaaaccattt 236  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| ||||| || || ||| ||||||||||||||||| ||||||    
T  26909959 actcagattagatcaaaggatgagatgcatgcttagccaaatgataagatccaatggtctcccttgttttggagccaaatccattt 26910044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 151 - 236
Target Start/End: Original strand, 48849785 - 48849870
Alignment:
Q  151 actcatattagatcaaaggatgagatgcatgcttagccaaatgatgagatctaacggcctctcttgttttggagccaaaaccattt 236  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||    || ||||||||||||||||||||||||    
T  48849785 actcagattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacaaaatcccttgttttggagccaaaaccattt 48849870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 62
Target Start/End: Complemental strand, 6254057 - 6254003
Alignment:
Q  9 gaataatatgtgcatg-agaagaataacaatcacattggaaacatagaaatgagg 62  Q
    |||||||||||||||| | || |||||||||||  ||||||||||||||||||||    
T  6254057 gaataatatgtgcatggaaaacaataacaatcatgttggaaacatagaaatgagg 6254003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 74; Significance: 4e-34; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 151 - 236
Target Start/End: Complemental strand, 9043945 - 9043860
Alignment:
Q  151 actcatattagatcaaaggatgagatgcatgcttagccaaatgatgagatctaacggcctctcttgttttggagccaaaaccattt 236  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  9043945 actcagattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacggcctcccttgttttggagccaaaaccattt 9043860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 151 - 236
Target Start/End: Original strand, 22009506 - 22009591
Alignment:
Q  151 actcatattagatcaaaggatgagatgcatgcttagccaaatgatgagatctaacggcctctcttgttttggagccaaaaccattt 236  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  22009506 actcagattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacggcctcccttgttttggagccaaaaccattt 22009591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 151 - 236
Target Start/End: Original strand, 30442525 - 30442610
Alignment:
Q  151 actcatattagatcaaaggatgagatgcatgcttagccaaatgatgagatctaacggcctctcttgttttggagccaaaaccattt 236  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  30442525 actcagattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacggcctcccttgttttggagccaaaaccattt 30442610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 151 - 236
Target Start/End: Original strand, 7473467 - 7473552
Alignment:
Q  151 actcatattagatcaaaggatgagatgcatgcttagccaaatgatgagatctaacggcctctcttgttttggagccaaaaccattt 236  Q
    ||||| ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  7473467 actcagattagatcaaaggatgagatgcatgcttagctaaatgatgagatccaacggcctcccttgttttggagccaaaaccattt 7473552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 157 - 207
Target Start/End: Original strand, 22004441 - 22004491
Alignment:
Q  157 attagatcaaaggatgagatgcatgcttagccaaatgatgagatctaacgg 207  Q
    ||||||||||||||||| ||| ||||| ||||||||||||||||| |||||    
T  22004441 attagatcaaaggatgatatgaatgctgagccaaatgatgagatccaacgg 22004491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 4e-34; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 151 - 236
Target Start/End: Original strand, 23348958 - 23349043
Alignment:
Q  151 actcatattagatcaaaggatgagatgcatgcttagccaaatgatgagatctaacggcctctcttgttttggagccaaaaccattt 236  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  23348958 actcagattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacggcctcccttgttttggagccaaaaccattt 23349043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 151 - 236
Target Start/End: Complemental strand, 12741831 - 12741746
Alignment:
Q  151 actcatattagatcaaaggatgagatgcatgcttagccaaatgatgagatctaacggcctctcttgttttggagccaaaaccattt 236  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||  |||||||||||||||||||||||    
T  12741831 actcagattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacggcctcctttgttttggagccaaaaccattt 12741746  T

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Target: chr2; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 151 - 236
Target Start/End: Original strand, 18355291 - 18355376
Alignment:
Q  151 actcatattagatcaaaggatgagatgcatgcttagccaaatgatgagatctaacggcctctcttgttttggagccaaaaccattt 236  Q
    ||||| ||||||| ||||||||||||||||||||||||||||||||||||| |||| |||| ||||||||||||||||||||||||    
T  18355291 actcagattagattaaaggatgagatgcatgcttagccaaatgatgagatccaacgacctcccttgttttggagccaaaaccattt 18355376  T

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Target: chr2; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 151 - 236
Target Start/End: Original strand, 10328869 - 10328955
Alignment:
Q  151 actcatattagatcaaa-ggatgagatgcatgcttagccaaatgatgagatctaacggcctctcttgttttggagccaaaaccattt 236  Q
    ||||| ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |||||||| || ||||||| ||||    
T  10328869 actcagattagatcaaaaggatgagatgcatgcttagccaaatgatgagatccaacggcctcccttgttttagaaccaaaacaattt 10328955  T

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Target: chr2; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 151 - 236
Target Start/End: Original strand, 1615893 - 1615977
Alignment:
Q  151 actcatattagatcaaaggatgagatgcatgcttagccaaatgatgagatctaacggcctctcttgttttggagccaaaaccattt 236  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| |||| ||||  ||| |||| |||||||| ||||||||||    
T  1615893 actcaaattagatcaaaggatgagatgcatgcttagccaaatgatgcgatccaacgatctcccttg-tttggagcaaaaaccattt 1615977  T

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Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 83 - 150
Target Start/End: Original strand, 22625294 - 22625362
Alignment:
Q  83 ggcataatgcaaaggctgtgggaggaaaatttaaaaattgaa-tcagcttgctgagtaggaaagcacta 150  Q
    |||| ||||||||||  |||||||| |||||||||||||||| ||| ||||||||||||||||||||||    
T  22625294 ggcacaatgcaaaggtcgtgggagggaaatttaaaaattgaactcaacttgctgagtaggaaagcacta 22625362  T

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Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 209
Target Start/End: Complemental strand, 24454651 - 24454599
Alignment:
Q  157 attagatcaaaggatgagatgcatgcttagccaaatgatgagatctaacggcc 209  Q
    ||||||||||||||||||||| |||   ||||||||||||||||| |||||||    
T  24454651 attagatcaaaggatgagatgaatgtcaagccaaatgatgagatccaacggcc 24454599  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 71
Target Start/End: Original strand, 22625193 - 22625254
Alignment:
Q  9 gaataatatgtgcatgagaagaataacaatcacattggaaacatagaaatgaggatagggtat 71  Q
    |||||| |||||||||| || |||||||||||  |||||||||||||||||||| ||| ||||    
T  22625193 gaataaaatgtgcatga-aacaataacaatcatgttggaaacatagaaatgaggttagtgtat 22625254  T

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Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 151 - 236
Target Start/End: Original strand, 29863339 - 29863424
Alignment:
Q  151 actcatattagatcaaaggatgagatgcatgcttagccaaatgatgagatctaacggcctctcttgttttggagccaaaaccattt 236  Q
    ||||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  29863339 actcagattagatcaaaggatgagatgcatgctcagccaaatgatgagatccaacggcctcccttgttttggagccaaaaccattt 29863424  T

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Target: scaffold0596 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0596
Description:

Target: scaffold0596; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 151 - 236
Target Start/End: Complemental strand, 797 - 712
Alignment:
Q  151 actcatattagatcaaaggatgagatgcatgcttagccaaatgatgagatctaacggcctctcttgttttggagccaaaaccattt 236  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |||||||| |||||||||||    
T  797 actcagattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacggcctcccttattttggagtcaaaaccattt 712  T

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Target: scaffold0035 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 151 - 236
Target Start/End: Complemental strand, 35206 - 35121
Alignment:
Q  151 actcatattagatcaaaggatgagatgcatgcttagccaaatgatgagatctaacggcctctcttgttttggagccaaaaccattt 236  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||  |||| ||||||||||||||||||||||||    
T  35206 actcagattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacaacctcccttgttttggagccaaaaccattt 35121  T

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Target: chr6 (Bit Score: 66; Significance: 3e-29; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 151 - 236
Target Start/End: Original strand, 33045409 - 33045494
Alignment:
Q  151 actcatattagatcaaaggatgagatgcatgcttagccaaatgatgagatctaacggcctctcttgttttggagccaaaaccattt 236  Q
    ||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| ||| ||||||||||||||||||||    
T  33045409 actcagattagatcaaaggatgagatgcatgcttaaccaaatgatgagatccaacggcctcccttattttggagccaaaaccattt 33045494  T

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Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 165 - 236
Target Start/End: Complemental strand, 10092641 - 10092570
Alignment:
Q  165 aaaggatgagatgcatgcttagccaaatgatgagatctaacggcctctcttgttttggagccaaaaccattt 236  Q
    |||| |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  10092641 aaagaatgagatgcatgcttagccaaatgatgagatccaacggcctcccttgttttggagccaaaaccattt 10092570  T

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Target: chr6; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 157 - 236
Target Start/End: Complemental strand, 8976541 - 8976462
Alignment:
Q  157 attagatcaaaggatgagatgcatgcttagccaaatgatgagatctaacggcctctcttgttttggagccaaaaccattt 236  Q
    ||||||||||||||||||||||||| ||||| |||| |||||||| ||||| ||| ||| ||||||||||||||||||||    
T  8976541 attagatcaaaggatgagatgcatgtttagctaaataatgagatccaacggtctcccttattttggagccaaaaccattt 8976462  T

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Target: chr6; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 9 - 82
Target Start/End: Original strand, 826596 - 826671
Alignment:
Q  9 gaataatatgtgcatgagaagaataacaatcacattggaaacatagaaatgaggataggg--tattaaatgtcatc 82  Q
    ||||||||||||||| |||| ||||||| |||| ||||||| ||||||||||||||||||  ||||||||||||||    
T  826596 gaataatatgtgcatcagaacaataacagtcacgttggaaatatagaaatgaggatagggtatattaaatgtcatc 826671  T

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Target: chr6; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 9 - 82
Target Start/End: Complemental strand, 21762286 - 21762211
Alignment:
Q  9 gaataatatgtgcatgagaagaataacaatcacattggaaacatagaaatgaggataggg--tattaaatgtcatc 82  Q
    ||||||||||||||| |||| ||||||| |||| ||||||| ||||||||||||||||||  ||||||||||||||    
T  21762286 gaataatatgtgcatcagaacaataacagtcacgttggaaatatagaaatgaggatagggtatattaaatgtcatc 21762211  T

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Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 79 - 152
Target Start/End: Complemental strand, 21762188 - 21762113
Alignment:
Q  79 catcggcataatgcaaaggctgtgggaggaaaatttaaaaattgaa-tcagcttgctgagtagg-aaagcactaac 152  Q
    |||||||| |||||||| | ||||||||| |||||||||||||||| | |||||| |||||||| |||||||||||    
T  21762188 catcggcagaatgcaaatgttgtgggagggaaatttaaaaattgaacttagcttgatgagtaggaaaagcactaac 21762113  T

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Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 182 - 236
Target Start/End: Complemental strand, 3065809 - 3065756
Alignment:
Q  182 cttagccaaatgatgagatctaacggcctctcttgttttggagccaaaaccattt 236  Q
    |||||||||||||||||||| ||||| ||| |||| |||||||||||||||||||    
T  3065809 cttagccaaatgatgagatccaacggtctcccttg-tttggagccaaaaccattt 3065756  T

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Target: scaffold0096 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 157 - 236
Target Start/End: Complemental strand, 27546 - 27468
Alignment:
Q  157 attagatcaaaggatgagatgcatgcttagccaaatgatgagatctaacggcctctcttgttttggagccaaaaccattt 236  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||    
T  27546 attagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacggcctcccttg-tttggagccaaaaccattt 27468  T

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Target: scaffold0045 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 151 - 233
Target Start/End: Original strand, 11612 - 11694
Alignment:
Q  151 actcatattagatcaaaggatgagatgcatgcttagccaaatgatgagatctaacggcctctcttgttttggagccaaaacca 233  Q
    ||||| |||| |||||||||||||||||||||||| ||||||||||||||| ||||||||| |||||||||||| ||||||||    
T  11612 actcagattaaatcaaaggatgagatgcatgcttaaccaaatgatgagatccaacggcctcccttgttttggagtcaaaacca 11694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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