View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2104R-Insertion-1 (Length: 1070)
Name: NF2104R-Insertion-1
Description: NF2104R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2104R-Insertion-1 |
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Alignment Details
Target: chr7 (Bit Score: 443; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 459 - 1008
Target Start/End: Original strand, 47622427 - 47622980
Alignment:
| Q |
459 |
ttaatttcatctcctttcttgtaggtaacctggtttggttattccaacccaggtagttctttagtttgcttgagcctccatggggcgttagaacggttta |
558 |
Q |
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| T |
47622427 |
ttaatttcatctcctttcttgtaggtaacctggtttggttattccaacccaggtagttctttagtttgcttgagcctccatggggagttagaacggttta |
47622526 |
T |
|
| Q |
559 |
aaacaacacctcgccatcaaaccaagaagctaacatcnnnnnnncggggtacaggaaaatccttcttgtctcacaaattataacaatttgtgaccaagtt |
658 |
Q |
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| T |
47622527 |
aaacaacacctcgccatcaaaccaagaagctaacatctttttttcggggtacaggaaaatccttcttgtctcgcaaattataacaatttgtgaccaagtt |
47622626 |
T |
|
| Q |
659 |
ccttttcctgtataccccaacatgtatcttttctcttcaaaaatgcataagcatacaagtctcttgttgtatttcgtcggtatctctattttgttgcatg |
758 |
Q |
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| T |
47622627 |
ccttttcctgtataccccaacatgtatcttttctcttcaaaaatgcataagcatacaagtctcttgttgtatttcgtcggtatctctattttgttgcatg |
47622726 |
T |
|
| Q |
759 |
gcattcacggtgcatccatagaggagccaggttcattgatattgggttgtgggttggatgaagggggagcc-aagatgaggatggaaggcaatggaatcc |
857 |
Q |
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| T |
47622727 |
tcattcacggtgcatccatagaggagccaggttcattgatattgggttgtgggttggatgaagggggagccaaagatgaggatggaaggcaatggagtcc |
47622826 |
T |
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| Q |
858 |
tgataataagtttttggcaacacaaaatggttcaac-acatacaaagccgcataccaagatccttccctcctcctctgt-gttcataacatgtcagctag |
955 |
Q |
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| T |
47622827 |
tgataataagtttttggcaacacaaaatggttcaacaacatacaaagccgcataccaagatccttccct-ctcctctgtggttccatacatgtcagctag |
47622925 |
T |
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| Q |
956 |
-attttcacatcagaaac-acataacaaatttaatg-tcagcctgataaacgttat |
1008 |
Q |
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| T |
47622926 |
aattttcacatcagaaacaacat-acaaatttaatgttcagcctgataaacgttat |
47622980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 9 - 387
Target Start/End: Original strand, 47621972 - 47622355
Alignment:
| Q |
9 |
atcattaccatataatatgattgatatatgtcatccccatatgcaattaattagcagctaaggtgaaacttaaacagatattatatatgttgtcacgaaa |
108 |
Q |
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| T |
47621972 |
atcattaccatataatatgattgatatatgtcatccccatatgcaattaattagcagctaaggtgaaacttaaacagatattatatatgttgtcacgaaa |
47622071 |
T |
|
| Q |
109 |
tgtatgagttttatggcgaggagaagtgtctttttaattattctttacctcatatcagtgtgtgtgatgattaatgacagaatattaacaaagtattaat |
208 |
Q |
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| T |
47622072 |
tgtatgagttttatggcgaggagaagtgtctttttaattattctttacctcatatcagtgtgtgtgatgattaatgacagaatactaacaaagtattaat |
47622171 |
T |
|
| Q |
209 |
ccataaattaacaagtagtccaacgctttattttcctt-----nnnnnnnncaagtagtccaacgctaaatatagcctaggctcatcacatgtatcaaat |
303 |
Q |
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| T |
47622172 |
ccataaattaacaagtagtccaacgctttattttccttcaaaaaaaaaaaaaaagtagtccaacgctaaatatagcctaggctcatcacatgtatcaaat |
47622271 |
T |
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| Q |
304 |
tcaaaccactgttgtaaaaacttgtaacaaatccaattcattcaaatacggtatttcctccccacctcccattctaatagtatg |
387 |
Q |
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| T |
47622272 |
tcaaaccactgttgtaaaaacttgtaacaaatccaattcattcaaatacggtatttcctccccacctcccgttctaatagtatg |
47622355 |
T |
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