View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2104R-Insertion-12 (Length: 353)
Name: NF2104R-Insertion-12
Description: NF2104R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2104R-Insertion-12 |
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| [»] scaffold0726 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-134; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 9 - 297
Target Start/End: Complemental strand, 24754096 - 24753811
Alignment:
| Q |
9 |
gtaatcacacgagaaatgagggtgaggttaactcctccccttgtattctcaccagaattgagggagacgttttctcgtcattggttcgagaagggaatgg |
108 |
Q |
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| T |
24754096 |
gtaatcacacgagaaatgagggtgatgttaactcctccccttgtattctcaccagaattgagggagacgttttctcgtcattggttcgagaagggaatgg |
24753997 |
T |
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| Q |
109 |
aaggtggtagtccaccttcactggccgtttttgtacgaaatggacttggggcaattttcgacatagcacaagattgttttaaccgaggttctactttcca |
208 |
Q |
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| T |
24753996 |
aaggtggtagtccaccttcactggccttttttatacgaaatggacttggtcaaattttcgacatagctcaagattgttttaaccgaggtt---ctttcca |
24753900 |
T |
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| Q |
209 |
agcctccaattctgcatccggtcatgttgcttcttctactcgtgccactactgattgaatggtggactattaattatgtttttcattat |
297 |
Q |
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| T |
24753899 |
agcctccaattctgcatccggtcatgttgctgcttctactcgtgccactactgattgaatggtggactattaattatgtttttcattat |
24753811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 143 - 289
Target Start/End: Original strand, 23680330 - 23680476
Alignment:
| Q |
143 |
acgaaatggacttggggcaattttcgacatagcacaagattgttttaaccgaggttctactttccaagcctccaattctgcatccggtcatgttgcttct |
242 |
Q |
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|||| ||||||||| | |||||||| ||||| | |||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| | || |
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| T |
23680330 |
acgacatggacttgagtcaattttcagtatagctctagattgttttaaccgaggttctgctttccaagcctccaattcggcatccggtcatgttggtgct |
23680429 |
T |
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| Q |
243 |
tctactcgtgccactactgattgaatggtggactattaattatgttt |
289 |
Q |
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| T |
23680430 |
tctattcgtgctgctactgattgaatagtggactattgattatgttt |
23680476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 143 - 289
Target Start/End: Original strand, 24052567 - 24052713
Alignment:
| Q |
143 |
acgaaatggacttggggcaattttcgacatagcacaagattgttttaaccgaggttctactttccaagcctccaattctgcatccggtcatgttgcttct |
242 |
Q |
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|||| ||||||||| | |||||||| ||||| | |||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| | || |
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| T |
24052567 |
acgacatggacttgagtcaattttcagtatagctctagattgttttaaccgaggttctgctttccaagcctccaattcggcatccggtcatgttggtgct |
24052666 |
T |
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| Q |
243 |
tctactcgtgccactactgattgaatggtggactattaattatgttt |
289 |
Q |
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| T |
24052667 |
tctattcgtgctgctactgattgaatagtggactattgattatgttt |
24052713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0726 (Bit Score: 134; Significance: 1e-69; HSPs: 1)
Name: scaffold0726
Description:
Target: scaffold0726; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 9 - 289
Target Start/End: Complemental strand, 6153 - 5858
Alignment:
| Q |
9 |
gtaatcacacgagaaatgagggtgaggttaactcctccccttgtattctcaccagaattgagggagacgttttctcgtcattggttcgagaagggaatgg |
108 |
Q |
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|||||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||| |
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| T |
6153 |
gtaatcccacgagaattgagggtgaggttaactcctccccttgtattctcacctgaattgagggagactttttctcgttattggttcgagaagggaatgg |
6054 |
T |
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| Q |
109 |
aaggtggtagtccaccttcactggccgtttttgtacgaaatggacttggggcaattttcgacatagcacaagattgttttaaccgaggttctactttcca |
208 |
Q |
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||||||||||||||||||| || ||| ||| || |||||||||| |||||| |||||| |||||||||||||||||||||| | ||||||| |
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| T |
6053 |
taggtggtagtccaccttcaaaggtcgtctttatagattatggacttggtcatattttcagcatagctcaagattgttttaaccgaggttatgctttcca |
5954 |
T |
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| Q |
209 |
agcctccaattctgcatccggtcatgt---------------tgcttcttctactcgtgccactactgattgaatggtggactattaattatgttt |
289 |
Q |
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||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||| |||||||||||||| ||||||||| |
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| T |
5953 |
agcctccaattctgcatccggtcatgttggtgcttctgcttgtgctgcttctactcgtgcaactactgattcaatggtggactattgattatgttt |
5858 |
T |
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