View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2104R-Insertion-13 (Length: 306)
Name: NF2104R-Insertion-13
Description: NF2104R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2104R-Insertion-13 |
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Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 9 - 291
Target Start/End: Complemental strand, 51360709 - 51360427
Alignment:
| Q |
9 |
ggaactactttcttgttgactgtcgttggagggttcatctccgatacatatatgaatcgtctcaacacatgcatcctctttggcataattcagttgttgg |
108 |
Q |
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| T |
51360709 |
ggaactactttcttgttgactgtcgttggagggttcatctccgatacatatatgaatcgtctcaacacatgcatcctctttggcataattcagttgttgg |
51360610 |
T |
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| Q |
109 |
taaagtattacgttaaacaagttcgttatttgattaacttactcaagacattgacttgatgttagtattttttgaattgcagggatacgccttacttgtg |
208 |
Q |
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| T |
51360609 |
taaagtattacattaaacaagttcattatttgattaacttactcaagacattgacttgatgttagtattttttgaattgcagggatacgccttacttgtg |
51360510 |
T |
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| Q |
209 |
attcaatcccatgatgagaaacttcagccagaactatgtggaaaaaagagttgtttacatggcacaaaagctttactcttcta |
291 |
Q |
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| T |
51360509 |
attcaatcccatgatgagaaacttcagccagaactatgtggaaaaaagagttgtttacatggcacaaaagctttactcttcta |
51360427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 202 - 291
Target Start/End: Complemental strand, 51351145 - 51351058
Alignment:
| Q |
202 |
acttgtgattcaatcccatgatgagaaacttcagccagaactatgtggaaaaaagagttgtttacatggcacaaaagctttactcttcta |
291 |
Q |
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| T |
51351145 |
acttgtgattcaatcccatgctgagaaacttcagccacaac--tgtggaaaacaaagttgtttgcatgtcacaaaagctttgttcttcta |
51351058 |
T |
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