View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2104R-Insertion-14 (Length: 254)
Name: NF2104R-Insertion-14
Description: NF2104R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2104R-Insertion-14 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 9 - 254
Target Start/End: Original strand, 40632526 - 40632771
Alignment:
| Q |
9 |
aaacattgttacatataattgcttgattgattggttatgtaaagctggtaatgtcgataaagcacatgagctattcagtcggatgaatgaggaacaagta |
108 |
Q |
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| T |
40632526 |
aaacattgttacatataattgcttgattgattggttatgtaaagctggtaatgtcgataaaacacatgagctattcagtcggatgaatgaggaacaagta |
40632625 |
T |
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| Q |
109 |
gagccagatgtggtcacgctcaatgcattggttgatggtatgtgcaaaattggaagggtcgatagtgcagttgagttttttaactagatgaaaggcaaag |
208 |
Q |
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| T |
40632626 |
gagccagatgtggtcacactcaatgcattggttaatggtatgtgcaaaattggaagggtcgatagtgcagttgagttttttaacgagatgaaaggcaaag |
40632725 |
T |
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| Q |
209 |
gtctggaaggaaacgctgttacttatactgcgttgatatctggttt |
254 |
Q |
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| T |
40632726 |
gtctggaaggaaacgctgttacttatactgcgttgatatctggttt |
40632771 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 17 - 250
Target Start/End: Complemental strand, 41237182 - 41236949
Alignment:
| Q |
17 |
ttacatataattgcttgattgattggttatgtaaagctggtaatgtcgataaagcacatgagctattcagtcggatgaatgaggaacaagtagagccaga |
116 |
Q |
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| T |
41237182 |
ttacatataattgcttgattgacgggttctgcaaagctggcaacattgataaagcacgtgagctattcggcttgatgaatgaggaacaaatacagccaaa |
41237083 |
T |
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| Q |
117 |
tgtggtcacgctcaatgcattggttgatggtatgtgcaaaattggaagggtcgatagtgcagttgagttttttaactagatgaaaggcaaaggtctggaa |
216 |
Q |
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| T |
41237082 |
tgtggtcaccctcaatacattggttgatggcatgtgcaaaattggaagggtctttagtgcagttgaatttttcaatgagatgaaaggcaagggccttaaa |
41236983 |
T |
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| Q |
217 |
ggaaacgctgttacttatactgcgttgatatctg |
250 |
Q |
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| T |
41236982 |
ggaaatgctgttacatacactgcgttgatatctg |
41236949 |
T |
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