View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2104R-Insertion-16 (Length: 133)
Name: NF2104R-Insertion-16
Description: NF2104R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2104R-Insertion-16 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 89; Significance: 3e-43; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 89; E-Value: 3e-43
Query Start/End: Original strand, 8 - 133
Target Start/End: Original strand, 3363303 - 3363420
Alignment:
| Q |
8 |
aacccaaaccgtgcacttttcaccttctgcactcagggaacgcgcagtccccatctaaagcaaagcgccaaaacgcacggtcgtgcataaaacgcacgga |
107 |
Q |
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| T |
3363303 |
aacccagaccgtgcacttttcaccttctgcactcagggaacgcgcagtccccatctaaag--------caaaacgcacggtcgtgcataaaacgcacaga |
3363394 |
T |
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| Q |
108 |
ccgtgcgtaatttcctgccattttga |
133 |
Q |
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|||||||||||||||||||||||||| |
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| T |
3363395 |
ccgtgcgtaatttcctgccattttga |
3363420 |
T |
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Target: chr5 (Bit Score: 34; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 116
Target Start/End: Complemental strand, 20684834 - 20684733
Alignment:
| Q |
15 |
accgtgcacttttcaccttctgcactcagggaacgcgcagtccccatctaaagcaaagcgccaaaacgcacggtcgtgcataaaacgcacggaccgtgcg |
114 |
Q |
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| T |
20684834 |
accgtgcacttttcagcttctgcacacaaggaacgcacggtccccttacaagccaacacactaaaacgcacggtcgtgcataaaatgcacaggccgtgcg |
20684735 |
T |
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| Q |
115 |
ta |
116 |
Q |
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|| |
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| T |
20684734 |
ta |
20684733 |
T |
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