View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2104R-Insertion-3 (Length: 618)
Name: NF2104R-Insertion-3
Description: NF2104R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2104R-Insertion-3 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 474; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 9 - 618
Target Start/End: Complemental strand, 40822221 - 40821623
Alignment:
| Q |
9 |
ttttacaccttgttattgctgtgtctaatttgttggaagtatcgtcaaacggatgatattgtattttttatattcttgtctttccttaaggaaataaatt |
108 |
Q |
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| T |
40822221 |
ttttacaccttgttattgttgtgtctaatttgttggaagtatcgtcaaacggacgatattgtattttttatattcttgtctttccttaaggaaataaatt |
40822122 |
T |
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| Q |
109 |
ggcaaatcagaaagttataattttatgaaaatgatatatagtttttatattctaggatcgttgaatttttaggatcatactgataaactatttgatgagg |
208 |
Q |
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| T |
40822121 |
ggcaaatcagaaagttataattttatgaaaatgatatatagtttttatattctaggatcattgaattttta--------ctgataaactatttgatgagg |
40822030 |
T |
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| Q |
209 |
ttgtctttgagtagaaaatgaatgattcaaagttatggtttttgaaaacattgtacaactaatattattttatcggttacaaggcacctgaccaagaaaa |
308 |
Q |
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| T |
40822029 |
ttgtct--gagtagaaaatgaatgattcaaagttatggtttttgaaaacattgtacaactaatattattttatcggttacaaggcacctgaccaagaaaa |
40821932 |
T |
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| Q |
309 |
ttttgaataaagaaatgattcttgtagatctgagaggatacatacttgatttcatgaaataaaaatgacggtctaggnnnnnnnnnnnnnnnnnnnnntg |
408 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
40821931 |
ttttgaataaagaaatgattcttgtagatctgagaggatacatacttgatttcatgaaataaaaatgacggtctagggaaaaaaaagaaaagaaaag-tg |
40821833 |
T |
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| Q |
409 |
ataacctaaataagtagtgaaatgactcaaacaacgttaagtttttaaaatgatagagattttaagaaccatgatttacttgtgattttttagactcttg |
508 |
Q |
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| T |
40821832 |
ataacctaaataagtagtgaaatgactcaaacaacattaagttcttaaaatgatagagattttcagaaccatgatttacttgtgattttttagactcttg |
40821733 |
T |
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| Q |
509 |
actttaaggaaatctcaaatcatcattaataagaaagagtggttgtttttgtatcatagtctaattgttgatcatataatgggtgtttcagtcgttgttc |
608 |
Q |
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| T |
40821732 |
actttaaggaaatctcaaatcattattaataagaaagagtggttgtttttgtatcatagtctaattgttgatcatataatgggtgtttcagtcgttgttc |
40821633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 158; Significance: 9e-84; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 158; E-Value: 9e-84
Query Start/End: Original strand, 94 - 330
Target Start/End: Original strand, 20291718 - 20291951
Alignment:
| Q |
94 |
ttaaggaaataaattggcaaatcagaaagttataattttatgaaaatgatatatagtttttatattctaggatcgttgaatttttaggatcatactgata |
193 |
Q |
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| T |
20291718 |
ttaaggaagtaaatttgcaaat-agaaagttatagttttatgaaaatgatat--agtttttatattccagaatcattgactgtttaggatcatactcata |
20291814 |
T |
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| Q |
194 |
aactatttgatgaggttgtctttgagtagaaaatgaatgattcaaagttatggtttttgaaaacattgtacaactaatattattttatcggttacaaggc |
293 |
Q |
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| T |
20291815 |
aactatttgatgaggttgtctttgagtagaaaatgaatgattcaaagttatagtttttgaaaaccttgtacaactaatattattttatagattacaaagc |
20291914 |
T |
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| Q |
294 |
acctgaccaagaaaattttgaataaagaaatgattct |
330 |
Q |
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| T |
20291915 |
acctgaccaagaaaaatttgaataaagaaatgattct |
20291951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 424 - 592
Target Start/End: Original strand, 20292021 - 20292187
Alignment:
| Q |
424 |
agtgaaatgactcaaacaacgttaagtttttaaaatgatagagattttaagaaccatgatttacttgtgattttttagactcttgactttaag---gaaa |
520 |
Q |
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| T |
20292021 |
agtgaaatgtctcaaagaacattaattttttgaaataata----tttttagaactttgatttacctgtgattttttagactcttgacgttaagaaggaaa |
20292116 |
T |
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| Q |
521 |
tctcaaatcatcattaataagaaagagtggttgtttttgtatcatagtctaattgttgatcatataatgggt |
592 |
Q |
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| T |
20292117 |
tctcaaatcattattaataagaaagagtggtt-tttttgtatcatagtctacttgttgatcatataatgggt |
20292187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 174 - 372
Target Start/End: Complemental strand, 20093018 - 20092821
Alignment:
| Q |
174 |
tttttaggatcatactgataaactatttgatgaggttgtctttgagtagaaaatgaatgattcaaagttatggtttttgaaaacattgtacaactaatat |
273 |
Q |
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| T |
20093018 |
tttttaggaacatactgataaatcattagacgaggttgtctttgagtagaaaataaatgattcaaaattatagattttgaaaacattagataactgatat |
20092919 |
T |
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| Q |
274 |
tattttatcggttacaaggcacctgaccaagaaaattttgaataaagaaatgattcttgtagatctgagaggatacatacttgatttcatgaaataaaa |
372 |
Q |
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| T |
20092918 |
aattttatcgataacgaggcacctgaccaagacatattttaataaaaaaatgattctcaaatatgtgacaggataca-agttgatttcatgatataaaa |
20092821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 202 - 373
Target Start/End: Original strand, 20296431 - 20296602
Alignment:
| Q |
202 |
gatgaggttgtctttgagt-agaaaatgaatgattcaaagttatggtttttgaaaacattgtacaactaatattattttatcggttac-aaggcacctga |
299 |
Q |
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| T |
20296431 |
gatgaggttgtctttgaatgaaaaaatgaacgattcaaggttatagtttttaaaaacattagacaactgatattattttattaattacgtaggaacctga |
20296530 |
T |
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| Q |
300 |
ccaagaaaattttgaataaagaaatgattcttgtagatctgagaggatacatacttgatttcatgaaataaaaa |
373 |
Q |
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| T |
20296531 |
ctaagtcagatttaaataaagaaatgattc-catatatgtgagaggataca-agttgatttaatgaaataaaaa |
20296602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 536 - 611
Target Start/End: Complemental strand, 20092660 - 20092587
Alignment:
| Q |
536 |
aataagaaagagtggttgtttttgtatcatagtctaattgttgatcatataatgggtgtttcagtcgttgttcaaa |
611 |
Q |
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| T |
20092660 |
aataagaaagagtggttgtttatgtatcatacttttagtattgatcacataat--gtgtttcaggtgttgttcaaa |
20092587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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