View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2104R-Insertion-4 (Length: 538)
Name: NF2104R-Insertion-4
Description: NF2104R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2104R-Insertion-4 |
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| [»] chr6 (7 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 434; Significance: 0; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 40 - 538
Target Start/End: Complemental strand, 9639399 - 9638891
Alignment:
| Q |
40 |
aatatctgtgttttacaaggtatttatgttaaaacttgcaggaattatagtactaatgtttactttgcttgtgttctacaggttagtgtaggcactcttc |
139 |
Q |
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| T |
9639399 |
aatatctgtgttttacaagatatttatgttaaaacttgcaggaattatagtactaatgtttactttgcttgtgttctacaggttagtgtaggcactcttc |
9639300 |
T |
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| Q |
140 |
ttgcattcacaatagcatcaatatctgtgttgatagtcagatatattcctccttctctacaagaacctattgattcagagtcaatggagtgtggttggag |
239 |
Q |
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| T |
9639299 |
ttgcattcacaatagcatcaatatctgtgttgatagtcagatatattcctccttctctacaagaacctattgattcagagtcaatggagtgtggttggag |
9639200 |
T |
|
| Q |
240 |
ccatttggtgacaaatgtaaaagatgaaaacaaaaaacctttacttgttaaagaggatgtatcaactgattacccacttcttgctaaacatcttgcaata |
339 |
Q |
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| T |
9639199 |
ccatttggtgacaaatgtaaaagatgaaaacaaaaaacctttacttgttaaagaggatgtatcaactgattacccacttcttgctaaacatcttgcaata |
9639100 |
T |
|
| Q |
340 |
gaaaactgtgagtgttatgtttttcattttctatttagttgccctatcatgcaaaaatatatgcaacaccgacacttcagattgaaggcgtatctatctg |
439 |
Q |
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| T |
9639099 |
gaaaactgtgagtgttatgtttttcattttctatttagtttctctatcatgcaaaaatatatgcaacaccgacacttcagattgaaggcgtatttatctg |
9639000 |
T |
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| Q |
440 |
gtgtctgacgcgtatacatgtttgacactggtacgacaccaacacatg----------taattatgcaaatttctcaaactctaatagtgtctacgtgtc |
529 |
Q |
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| T |
9638999 |
ttgtcttacacatatacatgtttgacactggtacgacaccaacacatgtagtcacatttaattatgcaagtttctcaaactctaatagtgtctacgtgtc |
9638900 |
T |
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| Q |
530 |
agtgtcgtg |
538 |
Q |
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|||||||| |
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| T |
9638899 |
ggtgtcgtg |
9638891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 92 - 352
Target Start/End: Complemental strand, 9613859 - 9613578
Alignment:
| Q |
92 |
ctaatgtttactttgcttgtgttctacaggttagtgtaggcactcttcttgcattcacaatagcatcaatatctgtgttgatagtcagatatattcctcc |
191 |
Q |
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| T |
9613859 |
ctaatgtttattttgcttgtcttctacaggttagtgtaggcactcttattgcattcacaatatcagcaataactgtgttgatagtcagatatataccacc |
9613760 |
T |
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| Q |
192 |
---------------------ttctctacaagaacctattgattcagagtcaatggagtgtggttggagccatttggtgacaaatgtaaaagatgaaaac |
270 |
Q |
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| T |
9613759 |
aattgaagttccattgccccattctcgacaagaaccaattgattctgagtcaatggagtatagttggagccatttggagacaaataagaatgatgcaaac |
9613660 |
T |
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| Q |
271 |
aaaaaacctttacttgttaaagaggatgtatcaactgattacccacttcttgctaaacatcttgcaatagaaaactgtgagt |
352 |
Q |
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| T |
9613659 |
cggaaacccttaattgttaaagaagatgcgtcaactgattatccccttattgctaaatatcttgcaatagacaaatgtgagt |
9613578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 84 - 352
Target Start/End: Complemental strand, 9628036 - 9627750
Alignment:
| Q |
84 |
ttatagtactaatgtttactttgcttgtgttctacaggttagtgtaggcactcttcttgcattcacaatagcatcaatatctgtgttgatagtcagatat |
183 |
Q |
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| T |
9628036 |
ttatagtactaatgtttattttgtttgtattttacaggttagtgtaggcactcttattgcattcacagtatcagcaatatccgtgttgatagtaagatat |
9627937 |
T |
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| Q |
184 |
a---------------------ttcctccttctctacaagaacctattgattcagagtcaatggagtgtggttggagccatttggtgacaaatgtaaaag |
262 |
Q |
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| |||| | ||| | ||||||||| |||||||| ||||||||||||| ||||||||||||||||| |||||||| || | |
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| T |
9627936 |
atcccaccaattgatgtcccatttccccattcccgacaagaaccaattgattctgagtcaatggagtatggttggagccatttggggacaaatgagaatg |
9627837 |
T |
|
| Q |
263 |
atgaaaacaaaaaacctttacttgttaaagaggatgtatcaactgattacccacttcttgctaaacatcttgcaatagaaaactgtgagt |
352 |
Q |
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|| | || ||||| |||||||||||| ||||| ||||||||||| || ||| | |||||| ||||||||||||| || ||||||| |
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| T |
9627836 |
atacataccggaaacccttacttgttaaa---gatgtgtcaactgattatccccttatcgctaaatatcttgcaatagacaaatgtgagt |
9627750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 83 - 185
Target Start/End: Complemental strand, 9648392 - 9648290
Alignment:
| Q |
83 |
attatagtactaatgtttactttgcttgtgttctacaggttagtgtaggcactcttcttgcattcacaatagcatcaatatctgtgttgatagtcagata |
182 |
Q |
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||||||||||||| || || ||||||||| |||||||||||||||| || ||||||||||||||||| || ||| ||||||||||||||||||| ||||| |
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| T |
9648392 |
attatagtactaaagtgtattttgcttgtcttctacaggttagtgttggtactcttcttgcattcaccattgcagcaatatctgtgttgatagtaagata |
9648293 |
T |
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| Q |
183 |
tat |
185 |
Q |
| |
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||| |
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| T |
9648292 |
tat |
9648290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 83 - 185
Target Start/End: Complemental strand, 9654409 - 9654307
Alignment:
| Q |
83 |
attatagtactaatgtttactttgcttgtgttctacaggttagtgtaggcactcttcttgcattcacaatagcatcaatatctgtgttgatagtcagata |
182 |
Q |
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||||||||||||| || || ||||||||| |||||||||||||||| || ||||||||||||||||| || ||| ||||||||||||||||||| ||||| |
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| T |
9654409 |
attatagtactaaagtgtattttgcttgtcttctacaggttagtgttggtactcttcttgcattcaccattgcagcaatatctgtgttgatagtaagata |
9654310 |
T |
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| Q |
183 |
tat |
185 |
Q |
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||| |
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| T |
9654309 |
tat |
9654307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 192 - 263
Target Start/End: Complemental strand, 9648262 - 9648191
Alignment:
| Q |
192 |
ttctctacaagaacctattgattcagagtcaatggagtgtggttggagccatttggtgacaaatgtaaaaga |
263 |
Q |
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||||| ||||||||| |||||||| ||||||||||||| ||||||||||||||||| |||||||| |||||| |
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| T |
9648262 |
ttctcaacaagaaccaattgattctgagtcaatggagtatggttggagccatttggagacaaatgaaaaaga |
9648191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 192 - 263
Target Start/End: Complemental strand, 9654279 - 9654208
Alignment:
| Q |
192 |
ttctctacaagaacctattgattcagagtcaatggagtgtggttggagccatttggtgacaaatgtaaaaga |
263 |
Q |
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| T |
9654279 |
ttctcaacaagaaccaattgattctgagtcaatggagtatggttggagccatttggagacaaatgaaaaaga |
9654208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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