View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2104R-Insertion-5 (Length: 497)
Name: NF2104R-Insertion-5
Description: NF2104R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2104R-Insertion-5 |
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Alignment Details
Target: chr5 (Bit Score: 465; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 9 - 493
Target Start/End: Complemental strand, 32396812 - 32396328
Alignment:
| Q |
9 |
aaaatttgattttgtagtggtttatattaggatagattcatgtaaaaatgaattgaacaatgaattcgagggtgaaaatcatttatagaagcaaaagtta |
108 |
Q |
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| T |
32396812 |
aaaatttgattttgtagtggtttatattaggatagattcatgtaaaaatgaattgaacaatgaattcgagggtgaaaatcatttatagaagcaaaagtta |
32396713 |
T |
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| Q |
109 |
taaattttagcttcttgagttagaatcaattcaagaggtagaatcaattatacacctccgaaaaatttgcctcgtgcgtaagtgaaaccgaatatacaca |
208 |
Q |
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| T |
32396712 |
taaattttagcttcttgagttagaatcaattcacgaggtagaatcaattatacacctccgaaaaatttgcctcgtgcgaaagtgaaaccaaatatacaca |
32396613 |
T |
|
| Q |
209 |
tgataatgtctatagccaaaccattgatcttatatgttttaatagttttgccaataatttataggtggggtaaaaaagcaagtaaatttttcaaggcagt |
308 |
Q |
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| T |
32396612 |
taataatgtctatagccaaaccattgatcttatatgttttaatagttttgccaataattaataggtggggtaaaaaagcaagtaaatttttcaaggcagt |
32396513 |
T |
|
| Q |
309 |
tgtaccatttctaatcaaacttaggcttgaaggtggccatataaattgctaatcctgaaattttctatcatattaaagtaaggcttggaggcaaaacaaa |
408 |
Q |
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| T |
32396512 |
tgtaccatttctaatcaaacttaggcttgaaggtggccatataaattgctaatcctgaaattttctatcatattaaagtaaggcttggaggcaaaacaaa |
32396413 |
T |
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| Q |
409 |
ttttgccatacaacaatcaaatacatgtaaaattatatttgtagaaagtaaaatcaatttgtaaaaccaagcacacccctatttt |
493 |
Q |
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| T |
32396412 |
ttttgccatacaacaatcaaatacatgtaaaattatatttgtagaaagtaaaatcaatttgtaaaaccaagcacacccctatttt |
32396328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 157
Target Start/End: Complemental strand, 18597150 - 18597019
Alignment:
| Q |
24 |
agtggtttatattaggatagattcatgtaaaaatgaattgaacaatgaattcgagggtgaaaatcatttatagaagcaaaagttataaattttagcttct |
123 |
Q |
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||||||||||||| ||||| ||| |||||| |||||| |||||| | || || || ||||||| |||||||| |||||| | ||||| ||||||| |
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| T |
18597150 |
agtggtttatatttggataagttcgagtaaaagtgaatttaacaataactttgaatgttaaaatcaattatagaatcaaaaggttcaaattatagcttc- |
18597052 |
T |
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| Q |
124 |
tgagttagaatcaattcaagaggtagaatcaatt |
157 |
Q |
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| T |
18597051 |
-aagttagaatcaattctggaggtaaaatcaatt |
18597019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 105
Target Start/End: Original strand, 37335029 - 37335090
Alignment:
| Q |
44 |
attcatgtaaaaatgaattgaacaatgaattcgagggtgaaaatcatttatagaagcaaaag |
105 |
Q |
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| T |
37335029 |
attcatataaaaatgagttgaacaatgaattcaagtgtaaaaatcaattctagaatcaaaag |
37335090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 24 - 104
Target Start/End: Complemental strand, 40339336 - 40339257
Alignment:
| Q |
24 |
agtggtttatattaggatagattcatgtaaaaatgaattgaacaatgaattcgagggtgaaaatcatttatagaagcaaaa |
104 |
Q |
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| T |
40339336 |
agtggtttatgtttggatatatttaggtaaaagtgaattgaacaataaattcaaggct-aaaatcaattgtagaagcaaaa |
40339257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 48 - 140
Target Start/End: Complemental strand, 44439340 - 44439250
Alignment:
| Q |
48 |
atgtaaaaatgaattgaacaatgaattcgagggtgaaaatcatttatagaagcaaaagttataaattttagcttcttgagttagaatcaattc |
140 |
Q |
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| T |
44439340 |
atgtaaaagtgagttgaacaataaatttgagtgttaaaatcaattttagaatcaaaagctccaaattttagcttc--aagttagaatcaattc |
44439250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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