View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2104R-Insertion-6 (Length: 490)
Name: NF2104R-Insertion-6
Description: NF2104R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2104R-Insertion-6 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 7 - 490
Target Start/End: Original strand, 30743112 - 30743604
Alignment:
| Q |
7 |
catgttcaggcatgaaattttcagcgtgattcagaggctcttgaattgagtacccaacatcatggagagagctctttaagtagagttgggatggtgcaaa |
106 |
Q |
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| T |
30743112 |
catgttcaggcatgaaattttcagcgtgattcagaggctcttgaattgagtacccaacatcatggagagagctctttaagtagagttgggatggtgcaaa |
30743211 |
T |
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| Q |
107 |
taaaagtaccaatgtaagggtatgagccattgtagtacgaatttcacacaaatcaaataagaaacggtttagaatctagtatattgttgtaagcagaaat |
206 |
Q |
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| T |
30743212 |
taaaagtaacaatgtaagggtatgagccgttgtagtacgaatttcacacaaatcaaataagaaacggtttagaatctagtatattgttctaagcagaaat |
30743311 |
T |
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| Q |
207 |
agtacaaagagaaattgaaggaaaaagaagcactggtactattgatatcagaggcaacagtaaaaacttaagaagcataataatcaaaaagagtaaa-at |
305 |
Q |
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| T |
30743312 |
agtacaaagagaaattgaaggaaaaataagcactagtactattgatatcagaggcagcagtaaaaacttaagaagcataataataaaaaagagtaaagat |
30743411 |
T |
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| Q |
306 |
tgcgttttagttaaataattcttcccaccgataatagtcattgaacctattttttatcgatcgcgttttagtgactttagtgcgtcaaagtgaacat--t |
403 |
Q |
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| T |
30743412 |
tgtgttttagttaaataattcttcccaccgataatagtcattgaacctattttttatcgatcgcgttttagtgactttagtgcgtcaaaatgaatattat |
30743511 |
T |
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| Q |
404 |
gcgagtcatatgactttgacgc------gtgactgaaacataattattttttataccacatattcaagtgaatatttcatgtaagactttgca |
490 |
Q |
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| T |
30743512 |
ataagtcatatgactttgacgcattaaagtgactgaaacacgattattttttataccacatattcaagtgaatattttatgtcagactttgca |
30743604 |
T |
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Target: chr4 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 39 - 194
Target Start/End: Complemental strand, 7558564 - 7558408
Alignment:
| Q |
39 |
agaggctcttgaattgagtacccaacatcatggagagagctctttaagtagagttgggatggtgcaaataaaagtaccaatgtaagggtatgagccattg |
138 |
Q |
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| T |
7558564 |
agaggctcttgaattgagttcccaacatcatggagggagctc-ttaagtatagttgagataatgccaataaaagaaccaatgtaaggatatgagccattg |
7558466 |
T |
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| Q |
139 |
tagtacgaatttcacac--aaatcaaataagaaacggtttagaatctagtatattgtt |
194 |
Q |
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| T |
7558465 |
ctgttgcaatttcacactaaaatcaaataagaaatggcttaatatttagtatattgtt |
7558408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 43 - 138
Target Start/End: Original strand, 8993419 - 8993513
Alignment:
| Q |
43 |
gctcttgaattgagtacccaacatcatggagagagctctttaagtagagttgggatggtgcaaataaaagtaccaatgtaagggtatgagccattg |
138 |
Q |
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| T |
8993419 |
gctcttgaattgagttcccagcatcatggagagagttcttaaa-tatagttgagataatgcaaataaaagagccaatgtaagggtatgagccattg |
8993513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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