View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2104R-Insertion-7 (Length: 430)
Name: NF2104R-Insertion-7
Description: NF2104R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2104R-Insertion-7 |
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Alignment Details
Target: chr1 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 14 - 418
Target Start/End: Original strand, 4775756 - 4776160
Alignment:
| Q |
14 |
gggtttgcacatagatatgtagctccaatgttgtctgagaatattgttggtgcagttaatggaatttgaagttcttgtaacaaattttgaacccatatta |
113 |
Q |
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| T |
4775756 |
gggtttgcacatagatatgtagctccaatgttgtcttagaatattgttggtgcagttaatggaatttgaagttcttgtaacaagttttgaacccatatta |
4775855 |
T |
|
| Q |
114 |
actcttgagtagtggctgctatagtacgatattcagcttcagttgacgattttgcaacagttggctgcttcttgcatgaccaagagataatattagggcc |
213 |
Q |
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| T |
4775856 |
attcttgagtagtggctgctatagtacgatattcagcttcagttgacgattttgcaattgttggttgcttcttgcatgaccaagagataatattagggcc |
4775955 |
T |
|
| Q |
214 |
aaaataaattaaataagcacctgtcgatttccgatcaattgtgtctccagcccaatctgcatcacaaaagcttgtgaggcttgtatttgaagatctcgtg |
313 |
Q |
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|||||||||||||||||||||||| ||||||| |||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||||| ||| |
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| T |
4775956 |
aaaataaattaaataagcacctgttgatttcctgtcaattgtgtctcctgcctaatctgcatcacaaaagcttgtgaggtttgtatttgaagatcttgtg |
4776055 |
T |
|
| Q |
314 |
agatggagtccattggagatggtggatttgagatagcgcaatactctatttaaggcttgcatatctgtcacagtaggagcttgcatttgttgtgctagtt |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
4776056 |
agatggagtccattggagatggtggatttgagatagcgcaatactctcttcaaggcttgcatatctgtcacagtaggagcttgcatttgttatgctagtt |
4776155 |
T |
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| Q |
414 |
tattc |
418 |
Q |
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||||| |
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| T |
4776156 |
tattc |
4776160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 8 - 297
Target Start/End: Original strand, 43061111 - 43061400
Alignment:
| Q |
8 |
aaaactgggtttgcacatagatatgtagctccaatgttgtctgagaatattgttggtgcagttaatggaatttgaagttcttgtaacaaattttgaaccc |
107 |
Q |
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||||| ||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
43061111 |
aaaacagggtttgcacatagatatgtagctctaatgttgtctgagaatatcgttggtgcagttaatggaatttgaagttcttgtaacaagttttgaaccc |
43061210 |
T |
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| Q |
108 |
atattaactcttgagtagtggctgctatagtacgatattcagcttcagttgacgattttgcaacagttggctgcttcttgcatgaccaagagataatatt |
207 |
Q |
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||||||| || |||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
43061211 |
atattaattcctgagtagtggctgctatagtccgatattcagcttcagttgatgattttgcaactgttggctgcttcttgcatgaccaagagataatatt |
43061310 |
T |
|
| Q |
208 |
agggccaaaataaattaaataagcacctgtcgatttccgatcaattgtgtctccagcccaatctgcatcacaaaagcttgtgaggcttgt |
297 |
Q |
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| T |
43061311 |
agggccaaaataaatgaaataagcacctgttcatatcctgtcaattgtgtctcctgcccaatctgcatcacaaaagtttgtgaggcttgt |
43061400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 45
Target Start/End: Complemental strand, 45192905 - 45192874
Alignment:
| Q |
14 |
gggtttgcacatagatatgtagctccaatgtt |
45 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
45192905 |
gggtttgcacatagatatgtagctccaatgtt |
45192874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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