View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2104R-Insertion-8 (Length: 413)
Name: NF2104R-Insertion-8
Description: NF2104R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2104R-Insertion-8 |
 | |
|
| [»] chr8 (2 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 238; Significance: 1e-131; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 118 - 413
Target Start/End: Original strand, 33550454 - 33550749
Alignment:
| Q |
118 |
aaattgggggaatttgaaggtacaattcttataaatacattgagtttaattttgatatattgtctgtcagtgtaaaactttttacggtcaaataatcaca |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33550454 |
aaattgggggaatttgaaggtacaattcttctaaatacattgagtttaattttgatatattgtctgtcagtgtaaaactttttacggtcaaataatcaca |
33550553 |
T |
|
| Q |
218 |
attaattgtatatgtggcttttaaaatagttttaattaagccatcannnnnnnaagtgaagttggtattatgaacaagaagggaaacccaaaattttaat |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| | ||||||||||||||||||| |
|
|
| T |
33550554 |
attaattgtatatgtggcttttaaaatagttttaattaagccatcatttttttaagttaagttggtattatgaacaaggacggaaacccaaaattttaat |
33550653 |
T |
|
| Q |
318 |
gaataannnnnnnattttgcaaaacttaatatggcatggatgattagagaactgattttgtggcatgtcctaccacttcatgtcgaaggtctagcg |
413 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33550654 |
gaataatttttatattttgcaaaacttaatatggcatggatgattagagaactgattttgtggcatgtcctaccacttcatgtcgaaggtctagcg |
33550749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 9 - 80
Target Start/End: Original strand, 33550345 - 33550416
Alignment:
| Q |
9 |
gttgagatttcagatcaaacaaagctggtataatatatcattcctctatttcatctaaaagtcgtcataacc |
80 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |
|
|
| T |
33550345 |
gttgagatttcagatcaaacaaagctggtataatatatcattcctctatttcatccaaaagttgtcataacc |
33550416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 216 - 256
Target Start/End: Original strand, 36145382 - 36145422
Alignment:
| Q |
216 |
caattaattgtatatgtggcttttaaaatagttttaattaa |
256 |
Q |
| |
|
||||||||| |||||||| ||||||| |||||||||||||| |
|
|
| T |
36145382 |
caattaattatatatgtgacttttaagatagttttaattaa |
36145422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University