View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2104_high_2 (Length: 423)
Name: NF2104_high_2
Description: NF2104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2104_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 13 - 406
Target Start/End: Complemental strand, 9405144 - 9404751
Alignment:
| Q |
13 |
aatatcaaccaaaatacgagcataatgaccaaatacccgattgtgtggcagtatctatagtcaaaggcatacctattgcaccagcaattttaaaaagagt |
112 |
Q |
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| T |
9405144 |
aatatcaaccaaaatacgagcataatgaccaaatacccgattgtgtggcagtatctatagtcaaaggcatacctattgcaccagcaattttaaaaagagt |
9405045 |
T |
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| Q |
113 |
ctaatcaaaccaatattcttgatgaagctccattattcttattccaacatggtcatgggtttcacggtatgagtgagtgttgaaatcttttgtccactaa |
212 |
Q |
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| T |
9405044 |
ctaatcaaaccaatattcttgatgaagctccattattcttattccaacatggtcatgggtttcacggtatgagtgagtgttgaaatcttttgtccactaa |
9404945 |
T |
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| Q |
213 |
caaaactgagaactcctgactttatattgttaatgtacatcagccaaacacagcgtatgtcttcaactaaggcgaaagtgaattcaagaaaacgatgtcc |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
9404944 |
caaaactgagaactcctgactttatattgttaatgtacatcagccaaacacagcgtatgtcttcaactaaggcaaaagtgaattcaagaaaacgatgtcc |
9404845 |
T |
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| Q |
313 |
taaggagatcatcttctaatgattggatatttttcataccagacaacttaaatgatatttcttttgttgtataaggattcttccccttatttag |
406 |
Q |
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| T |
9404844 |
taaggagatcatcttctaatgattggatatttttcataccagacaacttaaatgatatttattttgttgtataaggattcttccccttatttag |
9404751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 13 - 100
Target Start/End: Original strand, 20600543 - 20600630
Alignment:
| Q |
13 |
aatatcaaccaaaatacgagcataatgaccaaatacccgattgtgtggcagtatctatagtcaaaggcatacctattgcaccagcaat |
100 |
Q |
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||||||| ||||||| |||||||||||||| || | || |||||||||||||||||| ||||| || |||||||||||||||| |
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| T |
20600543 |
aatatcacccaaaatgcgagcataatgaccgaactcgattttatgtggcagtatctatagttaaaggtgtagctattgcaccagcaat |
20600630 |
T |
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