View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2104_high_5 (Length: 272)
Name: NF2104_high_5
Description: NF2104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2104_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 159; Significance: 1e-84; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 36 - 257
Target Start/End: Original strand, 18290977 - 18291199
Alignment:
| Q |
36 |
cttgttcgttgatccacctatgtttcatgtttgtatcacattggccatcttccaatcttcgagtaaatgactagttaattccaatgtatggacatttgtc |
135 |
Q |
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| T |
18290977 |
cttgttcgttgatccacctatgttacatgtttgtatcacattagccatgttccaatcttcgagtaaatgagtagttaatttcaatgtatggacatttgtc |
18291076 |
T |
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| Q |
136 |
tcatcaacatgctcccatagcttcaaatttataaatttccataagctccacaaaatgattgcaaatctttcacgttgaaatgcat-gtatctatgcaaag |
234 |
Q |
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|||||||||| | ||||||||||| |||||| |||||||||||||| |||||||||||||||||||||||| |||||||||||| | |||||||||||| |
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| T |
18291077 |
tcatcaacatttttccatagcttcagatttatgaatttccataagcttcacaaaatgattgcaaatctttcatgttgaaatgcatggaatctatgcaaag |
18291176 |
T |
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| Q |
235 |
gcataaacatcgcaacctccata |
257 |
Q |
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| T |
18291177 |
gcataaacatcacaacctccata |
18291199 |
T |
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