View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2104_high_7 (Length: 248)
Name: NF2104_high_7
Description: NF2104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2104_high_7 |
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| [»] chr4 (1 HSPs) |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 28 - 248
Target Start/End: Complemental strand, 40822221 - 40822011
Alignment:
| Q |
28 |
ttttacaccttgttattgctgtgtctaatttgttggaagtatcgtcaaacggatgatattgtattttttatattcttgtctttccttaaggaaataaatt |
127 |
Q |
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| T |
40822221 |
ttttacaccttgttattgttgtgtctaatttgttggaagtatcgtcaaacggacgatattgtattttttatattcttgtctttccttaaggaaataaatt |
40822122 |
T |
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| Q |
128 |
ggcaaatcagaaagttataattttatgaaaatgatatatagtttttatattctaggatcattgaatttttaggatcatactgataaactatttgatgagg |
227 |
Q |
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| T |
40822121 |
ggcaaatcagaaagttataattttatgaaaatgatatatagtttttatattctaggatcattgaatttt--------tactgataaactatttgatgagg |
40822030 |
T |
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| Q |
228 |
ttgtctttgagtagaaaatga |
248 |
Q |
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| T |
40822029 |
ttgtc--tgagtagaaaatga |
40822011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 113 - 248
Target Start/End: Original strand, 20291718 - 20291850
Alignment:
| Q |
113 |
ttaaggaaataaattggcaaatcagaaagttataattttatgaaaatgatatatagtttttatattctaggatcattgaatttttaggatcatactgata |
212 |
Q |
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| T |
20291718 |
ttaaggaagtaaatttgcaaat-agaaagttatagttttatgaaaatgatat--agtttttatattccagaatcattgactgtttaggatcatactcata |
20291814 |
T |
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| Q |
213 |
aactatttgatgaggttgtctttgagtagaaaatga |
248 |
Q |
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| T |
20291815 |
aactatttgatgaggttgtctttgagtagaaaatga |
20291850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 193 - 246
Target Start/End: Complemental strand, 20093018 - 20092965
Alignment:
| Q |
193 |
tttttaggatcatactgataaactatttgatgaggttgtctttgagtagaaaat |
246 |
Q |
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| T |
20093018 |
tttttaggaacatactgataaatcattagacgaggttgtctttgagtagaaaat |
20092965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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