View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2104_low_1 (Length: 438)
Name: NF2104_low_1
Description: NF2104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2104_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 19 - 319
Target Start/End: Complemental strand, 39918652 - 39918352
Alignment:
| Q |
19 |
tggtgtgagtttaaggattgttgttttggacgatgatgttttgagacggtgtttgaaaacggggttaacaaggattgacggtgtacggaactttgagtaa |
118 |
Q |
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| T |
39918652 |
tggtgtgagtttaaggattgttgttttggacgatgatgttttgagacggtgtttgaaaacggggttaacaaggattgacggtgtacggaactttgagtaa |
39918553 |
T |
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| Q |
119 |
ccgcatttgtcggtgaaaagtttaactgatgcaacgttgtcgttttcagtagccatgtaagaatactcagcaccattttcacgaaaccattgttccattt |
218 |
Q |
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| T |
39918552 |
ccgcatttgtcggtgaaaagtttaactgatgcaacgttatcgttttcagtagccatgtaagaatactcagcaccattttcacgaaaccattgttccattt |
39918453 |
T |
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| Q |
219 |
tctctaccagttttagccctattcccattcttctatgatttggagaaactcttaagcctaaaacgtaggctagttttgtgaaaacagggacatgattgga |
318 |
Q |
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| T |
39918452 |
tctctaccagttttagccctattcccattcttctatgatttggagaaactcttaagcctaaaacgtaggctagttttgtgaaaacagggacatgattgga |
39918353 |
T |
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| Q |
319 |
a |
319 |
Q |
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| T |
39918352 |
a |
39918352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 368 - 430
Target Start/End: Complemental strand, 39918303 - 39918241
Alignment:
| Q |
368 |
ccgcatgtaacggttttgatacaacctcgtatcattccgactgtctcattgcctatctctgct |
430 |
Q |
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| T |
39918303 |
ccgcatgtaacggttttgatacaacctcgtatcattccgactgtctcattgcctatctctgct |
39918241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 75 - 144
Target Start/End: Original strand, 5545448 - 5545517
Alignment:
| Q |
75 |
aaacggggttaacaaggattgacggtgtacggaactttgagtaaccgcatttgtcggtgaaaagtttaac |
144 |
Q |
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| T |
5545448 |
aaacggggttgacgagaattgacggtgtacggaactttgtataaccgcatttttcagtgaagagtttaac |
5545517 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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