View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2104_low_4 (Length: 287)
Name: NF2104_low_4
Description: NF2104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2104_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 11 - 271
Target Start/End: Complemental strand, 10244454 - 10244173
Alignment:
| Q |
11 |
cacagatatagaaccttgaaaattgtaattgtaaatttgaaaagataactaaattatatgagtgtgtataatttgtccaaactccaactcttataatttt |
110 |
Q |
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| T |
10244454 |
cacaaatatagaaccttgaaaattgtaattgtaaatttgaaaagataactaaattatatgagtgt--ataatttgtccaaactccaactcttaaaatttt |
10244357 |
T |
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| Q |
111 |
aagcaccaaaatcatttttcactaaagc-----------caagttataatgcaatgaaattccaagttcgtgaagtttagtaaattctagattcaaacat |
199 |
Q |
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| T |
10244356 |
aagcaccaaaatcatttttcactaaagctactactgagtcaagctataatgcaatgaaattccaagtacgtgaagtttagtaaattctagattcaaacat |
10244257 |
T |
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| Q |
200 |
aaattaatttttc------------acagaaaattgaactttcatgcaccttactgatatgacagagtattaagtagagtatat |
271 |
Q |
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| T |
10244256 |
aaattaattattcgttatgtctactacagaaaattgaactttcatgcaccttactgatatgacagagtattaagtagagtatat |
10244173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 151 - 208
Target Start/End: Complemental strand, 10218262 - 10218206
Alignment:
| Q |
151 |
caatgaaattccaagttcgtgaagtttagtaaattctagattcaaacataaattaatt |
208 |
Q |
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| T |
10218262 |
caatgaaattacaagttcgttaa-tttagtaaattcgagattcaaacattaattaatt |
10218206 |
T |
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