View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2104_low_6 (Length: 250)
Name: NF2104_low_6
Description: NF2104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2104_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 11 - 226
Target Start/End: Original strand, 40821619 - 40821834
Alignment:
| Q |
11 |
cagagagcatatttgaacaacgactgaaacacccattatatgatcaacaattagactatgatacaaaaacaaccactctttcttattaatgatgatttga |
110 |
Q |
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| T |
40821619 |
cagagagcatatttgaacaacgactgaaacacccattatatgatcaacaattagactatgatacaaaaacaaccactctttcttattaataatgatttga |
40821718 |
T |
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| Q |
111 |
gatttccttaaagtcaagagtctaaaaaatcacaagtaaatcatggttcttaaaatctctatcattttaaaaacttaacgttgtttgagtcatttcacta |
210 |
Q |
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| T |
40821719 |
gatttccttaaagtcaagagtctaaaaaatcacaagtaaatcatggttctgaaaatctctatcattttaagaacttaatgttgtttgagtcatttcacta |
40821818 |
T |
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| Q |
211 |
cttatttaggttatca |
226 |
Q |
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| T |
40821819 |
cttatttaggttatca |
40821834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 41 - 209
Target Start/End: Complemental strand, 20292187 - 20292021
Alignment:
| Q |
41 |
acccattatatgatcaacaattagactatgatacaaaaacaaccactctttcttattaatgatgatttgagatttc---cttaaagtcaagagtctaaaa |
137 |
Q |
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| T |
20292187 |
acccattatatgatcaacaagtagactatgatacaaaaa-aaccactctttcttattaataatgatttgagatttccttcttaacgtcaagagtctaaaa |
20292089 |
T |
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| Q |
138 |
aatcacaagtaaatcatggttcttaaaatctctatcattttaaaaacttaacgttgtttgagtcatttcact |
209 |
Q |
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| T |
20292088 |
aatcacaggtaaatcaaagttctaaaaa----tattatttcaaaaaattaatgttctttgagacatttcact |
20292021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 97
Target Start/End: Original strand, 20092587 - 20092660
Alignment:
| Q |
22 |
tttgaacaacgactgaaacacccattatatgatcaacaattagactatgatacaaaaacaaccactctttcttatt |
97 |
Q |
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| T |
20092587 |
tttgaacaacacctgaaacac--attatgtgatcaatactaaaagtatgatacataaacaaccactctttcttatt |
20092660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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