View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21050_high_3 (Length: 363)
Name: NF21050_high_3
Description: NF21050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21050_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 138; Significance: 4e-72; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 32 - 173
Target Start/End: Complemental strand, 11299777 - 11299636
Alignment:
| Q |
32 |
cattatgtatgataattttggcacactagcaatatacattcttatctaaaatgttacaaaaatatggtaagaaaattgtaaaatataatgaaaagcattt |
131 |
Q |
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| T |
11299777 |
cattatgtatgataattttggcacacttgcaatatacattcttatctaaaatgttacaaaaatatggtaagaaaattgtaaaatataatgaaaagcattt |
11299678 |
T |
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| Q |
132 |
agttagaacgttggtcttagtgtttgtgtttctttgaatgag |
173 |
Q |
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| T |
11299677 |
agttagaacgttggtcttagtgtttgtgtttctttgaatgag |
11299636 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 262 - 341
Target Start/End: Original strand, 11296287 - 11296366
Alignment:
| Q |
262 |
tacaatcttcttttgatcgttcattatttactaagaaattcggtaattctttcgtagccattttaatttatgttgatgat |
341 |
Q |
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| T |
11296287 |
tacaatcttcttttgatcattcattatttactaagaaatttggtaattctttcgtagccattttaatttatgttgatgat |
11296366 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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