View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21050_low_1 (Length: 412)
Name: NF21050_low_1
Description: NF21050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21050_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 18 - 396
Target Start/End: Complemental strand, 9580167 - 9579783
Alignment:
| Q |
18 |
gaatgggttggtgcagtcaccttaaaaagggggtttgacctga-tttattccctgtcattatgtaaggaagctagcgtctcatatgtgaggaggaaagtt |
116 |
Q |
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| T |
9580167 |
gaataggttggtggagtcaccttaaaa--ggagtttcgactgactttattccctatcattgtgtaaggaggctagagtttcagatacgatgaggaaagtt |
9580070 |
T |
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| Q |
117 |
gaaaatacttgggtgtggaatctgcaccggtctaga-------gagctatatagttgggatggagacatgttgaacacaatgttggagggaaaggagtag |
209 |
Q |
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| T |
9580069 |
gaaaacacttgagcgtgggacctgcactggtctagactctagagagctatatggtcgggaaggagacatgttgaacacaatgttggagggaagggagtag |
9579970 |
T |
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| Q |
210 |
ggatatgatagcatgggaagaggagaattcgaatatgtattctgtcaagtcagattataatgttctaaacgtcgagagtgttggtgatgaggagtttccg |
309 |
Q |
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| T |
9579969 |
ggatatgatagcatgggaagaggataattcgaatatatattctgtcaagtcagcttataatgttctaaacggcgagagtgttggtgatgaggagtttccg |
9579870 |
T |
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| Q |
310 |
atnnnnnnncttcggaataaaattattccgtcgaaggtgtccgtgtttgtatggcaggtaatgcaaaatcgtattccacccacgcac |
396 |
Q |
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| T |
9579869 |
ataaaaaaacttcggaataaaattattctgtcgaaggtgtccgtgtttgtatggcaggtaatgcaaaatcgtattccacccaagcac |
9579783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 15 - 198
Target Start/End: Original strand, 32718157 - 32718340
Alignment:
| Q |
15 |
gatgaatgggttggtgcagtcaccttaaaaagggggtttgacctgatttattccctgtcattatgtaaggaagctagcgtctcatatgtgaggaggaaag |
114 |
Q |
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| T |
32718157 |
gatgaatgggttggtgcagtcaccttaaaaagggggtttgacctgatttattccctgtcattatgtaaggaagctagagtctcatatgtgaggaggaaag |
32718256 |
T |
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| Q |
115 |
ttgaaaatacttgggtgtggaatctgcaccggtctagagagctatatagttgggatggagacatgttgaacacaatgttggagg |
198 |
Q |
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| T |
32718257 |
ttgaaaatacttgggtgtgggatctgcactggtctagagcgctatatagttgggatggagacatgttgaacacaatgttggagg |
32718340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 264 - 387
Target Start/End: Complemental strand, 9585468 - 9585343
Alignment:
| Q |
264 |
ttataatgttctaaacgtcgagagtgttggtgatgaggagtttccgatnnnnnnn--cttcggaataaaattattccgtcgaaggtgtccgtgtttgtat |
361 |
Q |
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| T |
9585468 |
ttataatgttctaaatggcgagagtgttggtgatggggagtttccgatacaaaaatactttggaataaaattattatgtcgaaggtgtccgtgtttgtat |
9585369 |
T |
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| Q |
362 |
ggcaggtaatgcaaaatcgtattcca |
387 |
Q |
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| T |
9585368 |
ggtaggtaatgcaaaattgtattcca |
9585343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 18 - 198
Target Start/End: Complemental strand, 9585693 - 9585515
Alignment:
| Q |
18 |
gaatgggttggtgcagtcaccttaaaaagggggtttgacctgatttattccctgtcattatgtaaggaagctagcgtctcatatgtgaggaggaaagttg |
117 |
Q |
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| T |
9585693 |
gaatgggttggtggaaccacattaaaaaggaggatcgatcggctttattccctatcattgtgtaaggagcctggcatcaaatatg--aggaggaaagttg |
9585596 |
T |
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| Q |
118 |
aaaatacttgggtgtggaatctgcaccggtctagagagctatatagttgggatggagacatgttgaacacaatgttggagg |
198 |
Q |
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| T |
9585595 |
aaaatacttgggtgtgagacctgaactggtctagagagctatatggttgggaaggagacacgctgaacacaatattggagg |
9585515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 324 - 387
Target Start/End: Original strand, 32718392 - 32718455
Alignment:
| Q |
324 |
gaataaaattattccgtcgaaggtgtccgtgtttgtatggcaggtaatgcaaaatcgtattcca |
387 |
Q |
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| T |
32718392 |
gaataaaattattccgtcgaaggtgtttgtgtttgtatggcaggtaatgcaaaatcgtattcca |
32718455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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