View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21050_low_2 (Length: 345)
Name: NF21050_low_2
Description: NF21050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21050_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 329
Target Start/End: Original strand, 4162118 - 4162455
Alignment:
| Q |
1 |
gattaattaaagcttataaagcaaggttaacacggcaataccaaaaaggagggtcgtaagagtgaatactaaggatgatcataactgaaaaggctatatt |
100 |
Q |
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| T |
4162118 |
gattaattaaagcttataaagcaaggttaacacggcaataccaaaaaagagggtcgtaagagtgaatactaaggatgatcataactgaaaaggctatatt |
4162217 |
T |
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| Q |
101 |
atagcttctttccctatgtgccctcatttttacttaaaacaaaaagagagactatttagtagtattatttgcttttgctaactacaaagcaaaatgggaa |
200 |
Q |
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| T |
4162218 |
atagcttctttccctatgtgccctcatttttacttaaaacaaaaagagagactatttagtagtattatttgcttttgctaactacaaagcaaaatgggaa |
4162317 |
T |
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| Q |
201 |
attgatttgccaacagatgtaatcatataaaaggc---------tataacaagctgtcacatataatcgaacctttcgcttgcatcagttgtgac---tt |
288 |
Q |
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| T |
4162318 |
attgatttgccaacagatgcaa--acataaaaggctatacagcatataacaagctgtcacatataatcggacctttcgcttgcatcagttgtgactaatt |
4162415 |
T |
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| Q |
289 |
atgttcgaatttctaatttgtaaactgattcaaacaaaaag |
329 |
Q |
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| T |
4162416 |
aggttcgaatttct-atttataaactgattcaaacaaaaag |
4162455 |
T |
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