View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21050_low_3 (Length: 314)

Name: NF21050_low_3
Description: NF21050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21050_low_3
NF21050_low_3
[»] chr5 (5 HSPs)
chr5 (1-299)||(18313456-18313750)
chr5 (104-290)||(34378170-34378357)
chr5 (104-295)||(18593315-18593507)
chr5 (104-266)||(698433-698596)
chr5 (160-295)||(7161833-7161969)
[»] chr3 (14 HSPs)
chr3 (104-267)||(31482956-31483119)
chr3 (104-290)||(34475578-34475763)
chr3 (94-295)||(47235761-47235962)
chr3 (94-290)||(45163918-45164114)
chr3 (94-295)||(20611846-20612046)
chr3 (94-295)||(2392323-2392524)
chr3 (113-268)||(53247981-53248138)
chr3 (104-268)||(17551029-17551189)
chr3 (141-295)||(2394087-2394242)
chr3 (96-290)||(43012440-43012634)
chr3 (96-290)||(19176567-19176763)
chr3 (193-290)||(30352263-30352359)
chr3 (250-298)||(45399015-45399063)
chr3 (94-214)||(40023472-40023590)
[»] chr7 (13 HSPs)
chr7 (104-295)||(47325702-47325894)
chr7 (104-295)||(44353380-44353573)
chr7 (104-268)||(5860132-5860297)
chr7 (104-287)||(38306333-38306517)
chr7 (104-295)||(37795061-37795253)
chr7 (104-290)||(3419477-3419665)
chr7 (104-290)||(10244254-10244441)
chr7 (94-268)||(25160878-25161048)
chr7 (163-268)||(31971978-31972084)
chr7 (162-290)||(3867246-3867375)
chr7 (113-214)||(33435191-33435291)
chr7 (94-214)||(34390025-34390143)
chr7 (96-246)||(41089614-41089764)
[»] chr2 (4 HSPs)
chr2 (104-290)||(10524173-10524359)
chr2 (104-281)||(39338696-39338874)
chr2 (104-295)||(17116696-17116889)
chr2 (119-268)||(387262-387411)
[»] chr8 (13 HSPs)
chr8 (104-295)||(20138498-20138691)
chr8 (104-295)||(9519571-9519764)
chr8 (105-295)||(31207179-31207370)
chr8 (104-267)||(12898120-12898283)
chr8 (104-290)||(37986680-37986867)
chr8 (104-290)||(24995216-24995404)
chr8 (104-268)||(32066139-32066304)
chr8 (104-290)||(41893224-41893410)
chr8 (104-210)||(16457364-16457470)
chr8 (104-266)||(34388852-34389014)
chr8 (135-214)||(22773602-22773681)
chr8 (104-201)||(36630909-36631006)
chr8 (236-295)||(16457292-16457351)
[»] chr1 (10 HSPs)
chr1 (94-295)||(24449747-24449948)
chr1 (104-295)||(46692636-46692828)
chr1 (104-295)||(5459233-5459425)
chr1 (104-263)||(31585608-31585769)
chr1 (104-290)||(5389244-5389430)
chr1 (105-266)||(41920525-41920692)
chr1 (105-219)||(30685798-30685912)
chr1 (139-269)||(6764224-6764355)
chr1 (97-201)||(24684390-24684493)
chr1 (250-295)||(32882585-32882630)
[»] chr4 (6 HSPs)
chr4 (104-268)||(8255099-8255264)
chr4 (104-268)||(8268517-8268682)
chr4 (104-200)||(30964513-30964609)
chr4 (104-264)||(30167412-30167573)
chr4 (104-258)||(4305797-4305951)
chr4 (250-299)||(31050474-31050523)
[»] scaffold0343 (1 HSPs)
scaffold0343 (104-268)||(5777-5943)
[»] scaffold0068 (1 HSPs)
scaffold0068 (94-246)||(35640-35790)
[»] chr6 (3 HSPs)
chr6 (104-267)||(3117565-3117729)
chr6 (167-268)||(10541967-10542069)
chr6 (186-295)||(14663231-14663341)


Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 18313750 - 18313456
Alignment:
Q  1 ttattgaagaatattttaaagaatctaattattattattatttttctcataacaagactgtgaacctctcgaaagcgaaaactgaaataaactttaagtt 100  Q
    |||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||| ||| ||||||||||||||||||| |||||    
T  18313750 ttattgaagaatattttaaagaatctaattattattatt----ttctcataacaagactgtgaacctctcaaaaacgaaaactgaaataaactt-aagtt 18313656  T
Q  101 ggttttttggg-ctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtgg 199  Q
    |||||||| || |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18313655 ggtttttttggactttgtgttgtactctttcggtggattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtgg 18313556  T
Q  200 cttagcttgggtgttaggattttggagtttttctttagggtgttcttcatgggtgagtagtgacgatggatgatgatggatatcgtgtttatagtgtttg 299  Q
    ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||  || ||||||||||||||||||  |||||||    
T  18313555 cttagtttgggttttaggattttggagtttttctttagggtgttcttcatgggtgagtagtgacgatgagtggtgatggatatcgtgtttacggtgtttg 18313456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 104 - 290
Target Start/End: Original strand, 34378170 - 34378357
Alignment:
Q  104 tttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggctta 203  Q
    |||||||||||||| |||| |||||||||| ||  | ||||||||||||||||||||| ||  ||||| |||| |||| ||||||||| ||||||||| |    
T  34378170 tttttgggctttgttttgtgctctttcggtggaccggaggtcgcgaggtttgtgatagttgtttgatccttcggttagatgctcttcgtaatgtggctca 34378269  T
Q  204 gcttgggtgttaggattttggagtttt-tctttagggtgttcttcatgggtgagtagtgacgatggatgatgatggatatcgtgttta 290  Q
    ||||||||||| || |||  ||||||| | || |||||||||||  ||||||||||||||||||||| | || |||||| ||||||||    
T  34378270 gcttgggtgttggggtttgagagttttattttgagggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgttta 34378357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 104 - 295
Target Start/End: Original strand, 18593315 - 18593507
Alignment:
Q  104 tttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggctta 203  Q
    ||||||||||| ||||||| |||||||||| | | | |||||||||| |||||||||| ||||||||| |||| ||||||| |||||||||||||||| |    
T  18593315 tttttgggcttagtgttgtgctctttcggtggttcggaggtcgcgagatttgtgataggtgcatgatccttcggttaggtgttcttcgaaatgtggctca 18593414  T
Q  204 gcttgggtgttaggattttggagtttt-tctttagggtgttcttcatgggtgagtagtgacgatggatgatgatggatatcgtgtttatagtg 295  Q
     |||||||||| || | | |||||||| | |  ||| |||||||  ||||||||||||||||||||  | || |||||| |||||||| ||||    
T  18593415 acttgggtgttggggtctgggagttttatttggaggatgttctttgtgggtgagtagtgacgatgggcggtggtggataccgtgtttacagtg 18593507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 104 - 266
Target Start/End: Original strand, 698433 - 698596
Alignment:
Q  104 tttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggctta 203  Q
    ||||||||||||||||||||||||||| || | |   |||| |||||||||||||||||||||| ||| |||| |||||||||||| ||||||||||| |    
T  698433 tttttgggctttgtgttgtactctttctgtggttcagaggttgcgaggtttgtgatagctgcataatccttcggttaggtgctctttgaaatgtggctca 698532  T
Q  204 gcttgggtgttaggattttggagtttt-tctttagggtgttcttcatgggtgagtagtgacgat 266  Q
    ||||||||||| || | |  ||||||| | |  |||||||||||  ||||||||||||||||||    
T  698533 gcttgggtgttggggtctgagagttttatttggagggtgttctttgtgggtgagtagtgacgat 698596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 295
Target Start/End: Complemental strand, 7161969 - 7161833
Alignment:
Q  160 agctgcatgatcattcgtttaggtgctcttcgaaatgtggcttagcttgggtgttaggattttggagtttt-tctttagggtgttcttcatgggtgagta 258  Q
    |||||||||||| || | | ||||| ||||||| |||||||| |||||| ||||| || | | |||||||| | || | |||||||||   |||||||||    
T  7161969 agctgcatgatcctttggtcaggtgttcttcgatatgtggctcagcttgtgtgttggggtctgggagttttattttgatggtgttctttgggggtgagta 7161870  T
Q  259 gtgacgatggatgatgatggatatcgtgtttatagtg 295  Q
    |||||| ||| || || |||| |||||||||| ||||    
T  7161869 gtgacgttgggtggtggtggaaatcgtgtttacagtg 7161833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 100; Significance: 2e-49; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 104 - 267
Target Start/End: Original strand, 31482956 - 31483119
Alignment:
Q  104 tttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggctta 203  Q
    ||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |    
T  31482956 tttttgggctttgtgttgtgctctttcggtggattggaggtcgcgaggtttgtgatagctgcatgatccttcggttaggtgctcttcgaaatgtggctca 31483055  T
Q  204 gcttgggtgttaggattttggagtttttctttagggtgttcttcatgggtgagtagtgacgatg 267  Q
    |||| |||||| || |||  |||||||| || |||||||||||  ||||| |||||||||||||    
T  31483056 gcttaggtgttggggtttgagagttttttttaagggtgttctttgtgggttagtagtgacgatg 31483119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 104 - 290
Target Start/End: Complemental strand, 34475763 - 34475578
Alignment:
Q  104 tttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggctta 203  Q
    ||||||||||||||||||| |||||||||| ||||| |||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||| || |    
T  34475763 tttttgggctttgtgttgtgctctttcggtggattggaggtcgcgaggtttgtgatagctgtatgatccttcggttaggtgctcttcgaaatgtgactca 34475664  T
Q  204 gcttgggtgttaggattttggagtttttctttagggtgttcttcatgggtgagtagtgacgatggatgatgatggatatcgtgttta 290  Q
    |||| |||||| || | |  |||||||| || |||||||||||  ||||||||||||||||||||  | || |||||| ||||||||    
T  34475663 gcttaggtgttggggtatgagagttttt-ttaagggtgttctttgtgggtgagtagtgacgatgggcggtggtggataccgtgttta 34475578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 94 - 295
Target Start/End: Original strand, 47235761 - 47235962
Alignment:
Q  94 ttaagttggttttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaa 193  Q
    ||||||||||||| ||||||||||||| | |||||||||| |||   ||||||||||||||||||||||||||||||| |||| ||||||||||||||||    
T  47235761 ttaagttggtttt-tgggctttgtgttttgctctttcggtggatcagaggtcgcgaggtttgtgatagctgcatgatccttcggttaggtgctcttcgaa 47235859  T
Q  194 atgtggcttagcttgggtgttaggattttggagtttt-tctttagggtgttcttcatgggtgagtagtgacgatggatgatgatggatatcgtgtttata 292  Q
    |||||| | |||||||||||| || | |  ||||||| | || |||||||||||  ||||||||||||||||||||| | || |||||| |||||||| |    
T  47235860 atgtggttcagcttgggtgttggggtctgcgagttttattttgagggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttaca 47235959  T
Q  293 gtg 295  Q
    |||    
T  47235960 gtg 47235962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 94 - 290
Target Start/End: Original strand, 45163918 - 45164114
Alignment:
Q  94 ttaagttggttttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaa 193  Q
    ||||||||||||| ||||||||||||||| |||||||||| ||| | ||||| ||| ||||||||||||||||||||| |||| ||||||||||||||||    
T  45163918 ttaagttggtttt-tgggctttgtgttgtgctctttcggtggatcggaggtcacgaagtttgtgatagctgcatgatccttcggttaggtgctcttcgaa 45164016  T
Q  194 atgtggcttagcttgggtgttaggattttggagtttt-tctttagggtgttcttcatgggtgagtagtgacgatggatgatgatggatatcgtgttta 290  Q
    ||||||||||||||||||||| || | | |||||||| | || |||||||| ||  | ||||| ||||||||||||  | ||||| ||| ||||||||    
T  45164017 atgtggcttagcttgggtgttggggtctaggagttttattttgagggtgttatttgtaggtgattagtgacgatgggcggtgatgaataccgtgttta 45164114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 94 - 295
Target Start/End: Original strand, 20611846 - 20612046
Alignment:
Q  94 ttaagttggttttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaa 193  Q
    ||||||||||||| ||||||||| ||||| |||||||||| ||| | |||||||||||||||||||||||| |||||| |||| ||||||||||||||||    
T  20611846 ttaagttggtttt-tgggctttgcgttgtgctctttcggtggatcggaggtcgcgaggtttgtgatagctgaatgatccttcggttaggtgctcttcgaa 20611944  T
Q  194 atgtggcttagcttgggtgttaggattttggagtttt-tctttagggtgttcttcatgggtgagtagtgacgatggatgatgatggatatcgtgtttata 292  Q
    ||||| || |||||||||||| || | | |||||||| |  | |||||||||||  ||||||||||||||||||||  |||| ||||||  ||||||| |    
T  20611945 atgtgactcagcttgggtgtt-gggtctaggagttttattctgagggtgttctttgtgggtgagtagtgacgatgggcgatggtggatactgtgtttaca 20612043  T
Q  293 gtg 295  Q
    |||    
T  20612044 gtg 20612046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 94 - 295
Target Start/End: Complemental strand, 2392524 - 2392323
Alignment:
Q  94 ttaagttggttttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaa 193  Q
    |||||||||||||| |||||||||||||| |||||||||| ||| | ||||||||||||||||| ||||||||||||| |||| |||||  |||||| ||    
T  2392524 ttaagttggttttt-gggctttgtgttgtgctctttcggtggatcggaggtcgcgaggtttgtgctagctgcatgatccttcggttaggatctcttcaaa 2392426  T
Q  194 atgtggcttagcttgggtgttaggattttggagtttt-tctttagggtgttcttcatgggtgagtagtgacgatggatgatgatggatatcgtgtttata 292  Q
    |||||||| |||||||||||| || | | |||||||| | ||   |||||| ||  ||||||||||||||||||||  | || |||||| |||||||| |    
T  2392425 atgtggctcagcttgggtgttggggtctaggagttttattttgtaggtgttatttgtgggtgagtagtgacgatgggcggtggtggataccgtgtttaca 2392326  T
Q  293 gtg 295  Q
    |||    
T  2392325 gtg 2392323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 113 - 268
Target Start/End: Original strand, 53247981 - 53248138
Alignment:
Q  113 tttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggcttagcttgggtg 212  Q
    |||||||||| |||||||||| ||||| ||||||||||||||||||||| || |||||| |||| ||| |||||||||||||||||||| || |||||||    
T  53247981 tttgtgttgtgctctttcggtggattggaggtcgcgaggtttgtgatagttgtatgatccttcggttatgtgctcttcgaaatgtggctcagtttgggtg 53248080  T
Q  213 ttaggattttggagtttttcttt--agggtgttcttcatgggtgagtagtgacgatgg 268  Q
    || || | |  |||||||| |||  || ||||||||  ||||||||||||||||||||    
T  53248081 ttggggtctgagagtttttattttgagagtgttctttgtgggtgagtagtgacgatgg 53248138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 104 - 268
Target Start/End: Original strand, 17551029 - 17551189
Alignment:
Q  104 tttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggctta 203  Q
    ||||||||||||||||||| |||||||| |  || | ||||||||||||||||||||||||||||||     | |||||||||||||||||||||||| |    
T  17551029 tttttgggctttgtgttgtgctctttcgatgcatcggaggtcgcgaggtttgtgatagctgcatgat-----ggttaggtgctcttcgaaatgtggctca 17551123  T
Q  204 gcttgggtgttaggattttggagtttt-tctttagggtgttcttcatgggtgagtagtgacgatgg 268  Q
    | ||||||||| || | |  ||||||| | || |||||||||||  | ||||||||||||||||||    
T  17551124 gtttgggtgttggggtctgagagttttattttgagggtgttctttgtcggtgagtagtgacgatgg 17551189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 141 - 295
Target Start/End: Complemental strand, 2394242 - 2394087
Alignment:
Q  141 aggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggcttagcttgggtgttaggattttggagtttt-tctttaggg 239  Q
    ||||||||||||||||| ||||||||||||| |||| |||||  |||||| |||||||||| |||||||||||| || | | |||||||| | ||   ||    
T  2394242 aggtcgcgaggtttgtgctagctgcatgatccttcggttaggatctcttcaaaatgtggctcagcttgggtgttggggtctaggagttttattttgtagg 2394143  T
Q  240 tgttcttcatgggtgagtagtgacgatggatgatgatggatatcgtgtttatagtg 295  Q
    |||| ||  ||||||||||||||||||||  | || |||||| |||||||| ||||    
T  2394142 tgttatttgtgggtgagtagtgacgatgggcggtggtggataccgtgtttacagtg 2394087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 96 - 290
Target Start/End: Original strand, 43012440 - 43012634
Alignment:
Q  96 aagttggttttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaat 195  Q
    ||||||||||||  |  ||||| |||| ||||||||||  ||   ||||||||||||| |||  || ||||||||| |||| | ||||||||||||||||    
T  43012440 aagttggtttttgagcttttgttttgtgctctttcggtgaatcagaggtcgcgaggtt-gtggaagttgcatgatcgttcggtcaggtgctcttcgaaat 43012538  T
Q  196 gtggcttagcttgggtgttaggattttggagtttttcttt-agggtgttcttcatgggtgagtagtgacgatggatgatgatggatatcgtgttta 290  Q
    |||||| |||||||||||| || | | ||||||||  ||| |||||||||||    ||||||||||| ||||||| |  | |||||| ||||||||    
T  43012539 gtggctcagcttgggtgttggggtctaggagttttaatttgagggtgttctttggaggtgagtagtggcgatggacgggggtggataccgtgttta 43012634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 96 - 290
Target Start/End: Original strand, 19176567 - 19176763
Alignment:
Q  96 aagttggttttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcatt--cgtttaggtgctcttcgaa 193  Q
    |||||||||||| ||  ||||  |||| |||||| ||| ||| | ||||||| ||||| |||  |||||||||||| ||  || | |||||||||||| |    
T  19176567 aagttggtttttgggcttttgatttgtgctcttttggtggatcggaggtcgcaaggtt-gtggaagctgcatgatccttttcggtcaggtgctcttcgta 19176665  T
Q  194 atgtggcttagcttgggtgttaggattttggagtttttcttt-agggtgttcttcatgggtgagtagtgacgatggatgatgatggatatcgtgttta 290  Q
    |||||||| |||||||||||  || | | || |||||  ||| ||||||||||| | |||||||||||||||||||||| || ||||||  |||||||    
T  19176666 atgtggctcagcttgggtgtcggggtctgggtgttttattttgagggtgttctttaggggtgagtagtgacgatggatggtggtggatactgtgttta 19176763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 193 - 290
Target Start/End: Complemental strand, 30352359 - 30352263
Alignment:
Q  193 aatgtggcttagcttgggtgttaggattttggagtttttctttagggtgttcttcatgggtgagtagtgacgatggatgatgatggatatcgtgttta 290  Q
    ||||||||| |||||||||||| || | | ||||||||| ||||||||||||||  ||| |||||||||||||||| || || |||||| ||||||||    
T  30352359 aatgtggctcagcttgggtgttggggtctcggagttttt-tttagggtgttctttgtggatgagtagtgacgatgggtggtggtggataccgtgttta 30352263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 298
Target Start/End: Original strand, 45399015 - 45399063
Alignment:
Q  250 gggtgagtagtgacgatggatgatgatggatatcgtgtttatagtgttt 298  Q
    ||||||||||||||||||||||||  ||||||| ||||||| |||||||    
T  45399015 gggtgagtagtgacgatggatgattgtggatattgtgtttacagtgttt 45399063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 214
Target Start/End: Complemental strand, 40023590 - 40023472
Alignment:
Q  94 ttaagttggttttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaa 193  Q
    |||||||||||||| ||  ||||| |||| |||||||||| |||   ||| || |||| |||||  ||||||||| ||||||| ||||| ||| |||| |    
T  40023590 ttaagttggtttttgggcttttgttttgtgctctttcggtggatcagaggacgggagg-ttgtggaagctgcatgttcattcggttaggagcttttcg-a 40023493  T
Q  194 atgtggcttagcttgggtgtt 214  Q
    |||||||| |||| |||||||    
T  40023492 atgtggctcagctagggtgtt 40023472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 93; Significance: 3e-45; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 104 - 295
Target Start/End: Complemental strand, 47325894 - 47325702
Alignment:
Q  104 tttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggctta 203  Q
    ||||||||||||||| ||| |||||||| | ||| | |||||||||||||||||||||||| |||||| |||| |||||||||||||||||||||||| |    
T  47325894 tttttgggctttgtgctgtgctctttcgatggatcggaggtcgcgaggtttgtgatagctgaatgatccttcggttaggtgctcttcgaaatgtggctca 47325795  T
Q  204 gcttgggtgttaggattttggagtttt-tctttagggtgttcttcatgggtgagtagtgacgatggatgatgatggatatcgtgtttatagtg 295  Q
    ||||||||||| || | | |||||||| | || |||||||||||  ||||||||||||||||||||  |||||||||||  ||||||| ||||    
T  47325794 gcttgggtgttggggtctgggagttttattttgagggtgttctttgtgggtgagtagtgacgatgggcgatgatggatactgtgtttacagtg 47325702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 104 - 295
Target Start/End: Complemental strand, 44353573 - 44353380
Alignment:
Q  104 tttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggctta 203  Q
    ||||||||||||||||||| |||||||||| ||| | ||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |       
T  44353573 tttttgggctttgtgttgtgctctttcggtggatcggaggtcgcgaggtttgtgatagctgcatgatccttcggttaggtgctcttcgaaatgtgacccg 44353474  T
Q  204 gcttgggtgttaggattttggagttt--ttctttagggtgttcttcatgggtgagtagtgacgatggatgatgatggatatcgtgtttatagtg 295  Q
    ||||||||||| || | | |||||||  || || |||||||||||  | ||||||||||||||||||| | || |||||| |||||||| ||||    
T  44353473 gcttgggtgttggggtctgggagttttatttttgagggtgttctttgtaggtgagtagtgacgatggacggtggtggataccgtgtttacagtg 44353380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 104 - 268
Target Start/End: Complemental strand, 5860297 - 5860132
Alignment:
Q  104 tttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggctta 203  Q
    ||||||||||||||||||| |||||||||| | | | ||||||||||||||||||||||||||||||| |||  |||||||||||||||||||||||| |    
T  5860297 tttttgggctttgtgttgtgctctttcggtggttcggaggtcgcgaggtttgtgatagctgcatgatccttcagttaggtgctcttcgaaatgtggctca 5860198  T
Q  204 gcttgggtgttaggattttggagtttt-tctttagggtgttcttcatgggtgagtagtgacgatgg 268  Q
    ||||||||||| || | | |||||||| | || |||||||||||  ||| ||||||||||||||||    
T  5860197 gcttgggtgttggggtctgggagttttattttcagggtgttctttgtggatgagtagtgacgatgg 5860132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 104 - 287
Target Start/End: Original strand, 38306333 - 38306517
Alignment:
Q  104 tttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggctta 203  Q
    ||||||||||||||||||| |||||||| | | | | ||||||||||||||||||||||||||||||| |||| ||| ||||||||||| |||||||| |    
T  38306333 tttttgggctttgtgttgtgctctttcgatggttcggaggtcgcgaggtttgtgatagctgcatgatccttcggttaagtgctcttcgatatgtggctca 38306432  T
Q  204 gcttgggtgttaggattttggagtttt-tctttagggtgttcttcatgggtgagtagtgacgatggatgatgatggatatcgtgt 287  Q
    ||||||||||| || | |  ||||||| | || |||||||||||  | |||||||||||||||||| || || ||||||||||||    
T  38306433 gcttgggtgttggggtctgtgagttttattttgagggtgttctttgtaggtgagtagtgacgatgggtggtggtggatatcgtgt 38306517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 104 - 295
Target Start/End: Original strand, 37795061 - 37795253
Alignment:
Q  104 tttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggctta 203  Q
    ||||||||||||||||||| |||||||||| | | | ||||||||||||||||||||||||||||||| |||| |||||||||||||||| ||||||| |    
T  37795061 tttttgggctttgtgttgtgctctttcggtggttcggaggtcgcgaggtttgtgatagctgcatgatccttcggttaggtgctcttcgaactgtggctca 37795160  T
Q  204 gcttgggtgttaggattttggagtttt-tctttagggtgttcttcatgggtgagtagtgacgatggatgatgatggatatcgtgtttatagtg 295  Q
    ||||||||||| || |||  ||||||| | || |||||||||||  ||| | |||||| | |||||  | || |||||| |||||||| ||||    
T  37795161 gcttgggtgttggggtttgagagttttattttgagggtgttctttgtggttaagtagtaatgatgggcggtggtggataccgtgtttacagtg 37795253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 104 - 290
Target Start/End: Complemental strand, 3419665 - 3419477
Alignment:
Q  104 tttttgggctttgtgt-tgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggctt 202  Q
    |||||||||||||| | ||| |||||||||| |||   ||||| | ||||||||||||||||| ||||| |||| |||||||| ||||||| ||||||||    
T  3419665 tttttgggctttgtttctgtgctctttcggtggatcagaggtcacaaggtttgtgatagctgcttgatccttcggttaggtgcgcttcgaattgtggctt 3419566  T
Q  203 agcttgggtgttaggattttggagtttt-tctttagggtgttcttcatgggtgagtagtgacgatggatgatgatggatatcgtgttta 290  Q
    | |||||||||| || ||| |||||||| | || |||||||||||  || |||||||||||||||| | | || |||||||| ||||||    
T  3419565 aacttgggtgttggggtttgggagttttattttaagggtgttctttgtgagtgagtagtgacgatgaacggtggtggatatcatgttta 3419477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 104 - 290
Target Start/End: Original strand, 10244254 - 10244441
Alignment:
Q  104 tttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggctta 203  Q
    ||||||| ||||||||||| ||||||| || | | | ||||||||||||||||||||| ||||||||| |||| |||||||||||| ||| ||||||| |    
T  10244254 tttttggcctttgtgttgtgctctttcagtggttcggaggtcgcgaggtttgtgatagttgcatgatccttcggttaggtgctctttgaattgtggctca 10244353  T
Q  204 gcttgggtgttaggattttggagtttttctt-tagggtgttcttcatgggtgagtagtgacgatggatgatgatggatatcgtgttta 290  Q
    ||||||||||| || | | ||| ||||  ||  |||||| ||||  ||||||||||||||||||||  |||| |||||| | ||||||    
T  10244354 gcttgggtgtttgggtctgggatttttagttggagggtggtctttgtgggtgagtagtgacgatgggcgatggtggataccatgttta 10244441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 94 - 268
Target Start/End: Original strand, 25160878 - 25161048
Alignment:
Q  94 ttaagttggttttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaa 193  Q
    |||||||||||||| |||||  ||||||| |||||||||| ||||| ||||| | ||||||||||||||||  ||||| |||  |||||||||||| |||    
T  25160878 ttaagttggttttt-gggct--gtgttgtgctctttcggtggattggaggtctcaaggtttgtgatagctgtgtgatccttcagttaggtgctcttggaa 25160974  T
Q  194 atgtggcttagcttgggtgttaggattttggagtttttctttagggtgttcttcatgggtgagtagtgacgatgg 268  Q
    |||||||| | ||| | |||| || | |  |||||||| || | |||||||||  ||||||||||||||||||||    
T  25160975 atgtggctcaacttagatgttggggtctgagagttttt-ttaaaggtgttctttgtgggtgagtagtgacgatgg 25161048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 163 - 268
Target Start/End: Complemental strand, 31972084 - 31971978
Alignment:
Q  163 tgcatgatcattcgtttaggtgctcttcgaaatgtggcttagcttgggtgttaggattttggagtttt-tctttagggtgttcttcatgggtgagtagtg 261  Q
    ||||||||| |||| |||||||||||||||||||||||| |||||||||||| || | | |||||||| | |  |||||||||||  |||||||||||||    
T  31972084 tgcatgatccttcggttaggtgctcttcgaaatgtggctcagcttgggtgttggggtctgggagttttatttggagggtgttctttgtgggtgagtagtg 31971985  T
Q  262 acgatgg 268  Q
    |||||||    
T  31971984 acgatgg 31971978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 162 - 290
Target Start/End: Original strand, 3867246 - 3867375
Alignment:
Q  162 ctgcatgatcattcgtttaggtgctcttcgaaatgtggcttagcttgggtgttaggattttggagtttttcttt--agggtgttcttcatgggtgagtag 259  Q
    |||||||||| || | | ||||||||||||| |||||||| |||||||||||| ||| | ||||  |||| |||  |||||||||||   ||||||||||    
T  3867246 ctgcatgatcctttggtcaggtgctcttcgatatgtggctcagcttgggtgtt-ggagtatggaagttttattttgagggtgttctttgggggtgagtag 3867344  T
Q  260 tgacgatggatgatgatggatatcgtgttta 290  Q
    |||||||||| | || |||||||||||||||    
T  3867345 tgacgatggacggtggtggatatcgtgttta 3867375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 113 - 214
Target Start/End: Original strand, 33435191 - 33435291
Alignment:
Q  113 tttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggcttagcttgggtg 212  Q
    ||||| |||| |||||||||| ||| | ||||||||||||| |||| |||| ||||||| |||| | |||||||||||||| ||||||| ||||||| ||    
T  33435191 tttgttttgtgctctttcggtggatcggaggtcgcgaggtt-gtgaaagctacatgatccttcggtcaggtgctcttcgaattgtggctcagcttggttg 33435289  T
Q  213 tt 214  Q
    ||    
T  33435290 tt 33435291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 214
Target Start/End: Original strand, 34390025 - 34390143
Alignment:
Q  94 ttaagttggttttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaa 193  Q
    |||||||||||||| ||  ||| | |||| |||||||||| ||| | |||||| |||| |||||  ||||||||| ||||||| ||||| ||| ||| ||    
T  34390025 ttaagttggtttttgggcttttattttgtgctctttcggtggatcggaggtcgagagg-ttgtggaagctgcatgttcattcgattaggagcttttc-aa 34390122  T
Q  194 atgtggcttagcttgggtgtt 214  Q
    |||||||| | ||||||||||    
T  34390123 atgtggctcaacttgggtgtt 34390143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 96 - 246
Target Start/End: Complemental strand, 41089764 - 41089614
Alignment:
Q  96 aagttggttttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaat 195  Q
    ||||||||||||  |  ||||| ||||  ||||||||| ||| | ||||||||||||| |||  |||||||||||  |||||| |||||||||||||| |    
T  41089764 aagttggtttttgagcttttgttttgtgatctttcggtggatcggaggtcgcgaggtt-gtggaagctgcatgattcttcgttgaggtgctcttcgaagt 41089666  T
Q  196 gtggcttagcttgggtgttaggattttggagtttt-tctttagggtgttctt 246  Q
    || ||| |   ||||||||||| | | |||||||| | || |||||||||||    
T  41089665 gtagctcaagatgggtgttagggtctgggagttttattttgagggtgttctt 41089614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 88; Significance: 3e-42; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 104 - 290
Target Start/End: Original strand, 10524173 - 10524359
Alignment:
Q  104 tttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggctta 203  Q
    ||||||||||||||||||| |||||||||| | | | ||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||||| |    
T  10524173 tttttgggctttgtgttgtgctctttcggt-gttcggaggtcgcgaggtttgtgatagctgcatgatccttcggttaggtgctcttcgatatgtggctca 10524271  T
Q  204 gcttgggtgttaggattttggagtttt-tctttagggtgttcttcatgggtgagtagtgacgatggatgatgatggatatcgtgttta 290  Q
    ||||||||||| || ||| |||||||| | |  |||||||||||  ||||||||||||||||||||  | || |||||| ||||||||    
T  10524272 gcttgggtgttggggtttgggagttttatttggagggtgttctttgtgggtgagtagtgacgatgggcggtggtggataccgtgttta 10524359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 104 - 281
Target Start/End: Complemental strand, 39338874 - 39338696
Alignment:
Q  104 tttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggctta 203  Q
    ||||||||||||||||||| |||||||||| ||| | |||||||||||||||||||||||| |||||| |||| |||||||||||||||| |||| || |    
T  39338874 tttttgggctttgtgttgtgctctttcggtggatcggaggtcgcgaggtttgtgatagctgaatgatccttcggttaggtgctcttcgaattgtgactca 39338775  T
Q  204 gcttgggtgttaggattttggagtttt-tctttagggtgttcttcatgggtgagtagtgacgatggatgatgatggata 281  Q
    |||||||||||  | | | |||||||| | || |||||||||||  ||||||||||||||||||||  |||| ||||||    
T  39338774 gcttgggtgttgaggtctgggagttttattttgagggtgttctttgtgggtgagtagtgacgatgggcgatggtggata 39338696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 104 - 295
Target Start/End: Complemental strand, 17116889 - 17116696
Alignment:
Q  104 tttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggctta 203  Q
    ||||| |||||||| |||| || ||||| ||||||| |||||||||||||||||||| || | |||||  ||| |||||||||||||| ||||||||| |    
T  17116889 tttttaggctttgttttgtgctttttcgatagattggaggtcgcgaggtttgtgatatctacttgatccatcggttaggtgctcttcgtaatgtggctca 17116790  T
Q  204 gcttgggtgttaggattttggagtttttcttt--agggtgttcttcatgggtgagtagtgacgatggatgatgatggatatcgtgtttatagtg 295  Q
    ||||||||||| || | |  |||||||| |||  |||||||||||  |||||||||| |||||||||  | || |||||| |||||||| ||||    
T  17116789 gcttgggtgttggggtctgagagtttttattttgagggtgttctttgtgggtgagtaatgacgatgggcggtggtggataccgtgtttacagtg 17116696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 119 - 268
Target Start/End: Original strand, 387262 - 387411
Alignment:
Q  119 ttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggcttagcttgggtgttagga 218  Q
    |||| |||||| ||| ||| | ||||| ||||||||  || ||||||||| ||||||  | ||||||||||||| | |||||| |||||||||||| ||     
T  387262 ttgtgctcttttggtggatcggaggtcacgaggttttgga-agctgcatgttcattcagtcaggtgctcttcgataggtggctcagcttgggtgttgggg 387360  T
Q  219 ttttggagtttt-tctttagggtgttcttcatgggtgagtagtgacgatgg 268  Q
    | | |||||||| | || |||||||||||   |||||| ||||||||||||    
T  387361 tctgggagttttattttgagggtgttctttgggggtgaatagtgacgatgg 387411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 87; Significance: 1e-41; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 104 - 295
Target Start/End: Original strand, 20138498 - 20138691
Alignment:
Q  104 tttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggctta 203  Q
    ||||||||||||||||||| |||||||||| ||| | ||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |       
T  20138498 tttttgggctttgtgttgtgctctttcggtggatcggaggtcgcgaggtttgtgatagctgcatgatccttcggttaggtgctcttcgaaatgtgacccg 20138597  T
Q  204 gcttgggtgttaggattttggagttt--ttctttagggtgttcttcatgggtgagtagtgacgatggatgatgatggatatcgtgtttatagtg 295  Q
    ||||||||||| || | | |||||||  || || |||||||||||  | ||||||||||||||||||| | || |||||| |||||||| ||||    
T  20138598 gcttgggtgttggggtctgggagttttatttttgagggtgttctttgtaggtgagtagtgacgatggacggtggtggataccgtgtttacagtg 20138691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 104 - 295
Target Start/End: Original strand, 9519571 - 9519764
Alignment:
Q  104 tttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggctta 203  Q
    ||||||||||||||||||| |||||||||| | | | |||| |||| |||||||||||||||||||||||||| |||||||||||||||||| ||||| |    
T  9519571 tttttgggctttgtgttgtgctctttcggtgggtcggaggttgcgaagtttgtgatagctgcatgatcattcggttaggtgctcttcgaaatatggctca 9519670  T
Q  204 gcttgggtgttaggattttg-gagtttt-tctttagggtgttcttcatgggtgagtagtgacgatggatgatgatggatatcgtgtttatagtg 295  Q
    ||||||||||| ||  | || ||||||| | || |||||||||||  ||||||||||||||||||||  | || |||||| |||||||| ||||    
T  9519671 gcttgggtgttgggggtctgagagttttattttgagggtgttctttgtgggtgagtagtgacgatgggcggtggtggataccgtgtttacagtg 9519764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 105 - 295
Target Start/End: Complemental strand, 31207370 - 31207179
Alignment:
Q  105 ttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggcttag 204  Q
    ||||||| |||||||||| || ||||||| ||| | |||||||||||||||||||||||| |||| | |||| |||||||||||||||||||||||| ||    
T  31207370 ttttgggatttgtgttgtgctttttcggtggatcggaggtcgcgaggtttgtgatagctgaatgacccttcggttaggtgctcttcgaaatgtggctcag 31207271  T
Q  205 cttgggtgttaggattttggagtttt-tctttagggtgttcttcatgggtgagtagtgacgatggatgatgatggatatcgtgtttatagtg 295  Q
    |||||||||| |  | | |||||||| | || |||||||||||  ||||||||||||||||||||  |||| ||||||  ||||||| ||||    
T  31207270 cttgggtgttggagtatgggagttttattttgagggtgttctttgtgggtgagtagtgacgatgggcgatggtggatactgtgtttacagtg 31207179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 104 - 267
Target Start/End: Complemental strand, 12898283 - 12898120
Alignment:
Q  104 tttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggctta 203  Q
    |||| |||||||||||||| |||||||| | | | | ||||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||| |    
T  12898283 ttttggggctttgtgttgtgctctttcgatggttcggaggtcgcgaggtttgtgatagctgc-tgatccttcggttaggtgctcttcgaaatgtggctca 12898185  T
Q  204 gcttgggtgttaggattttggagtttt-tctttagggtgttcttcatgggtgagtagtgacgatg 267  Q
    ||||||||||| || | || ||||||| | || |||||||||||  |||||||||||||||||||    
T  12898184 gcttgggtgttggggtcttagagttttattttgagggtgttctttgtgggtgagtagtgacgatg 12898120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 104 - 290
Target Start/End: Complemental strand, 37986867 - 37986680
Alignment:
Q  104 tttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggctta 203  Q
    |||||| |||||||||||| |||||||||| | | | ||||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||| |    
T  37986867 tttttgtgctttgtgttgtgctctttcggtggttcggaggtcgcgaggtttgtgatagctgcctgatccttcggttaggtgctcttcgaaatgtggctca 37986768  T
Q  204 gcttgggtgttaggattttggagtttt-tctttagggtgttcttcatgggtgagtagtgacgatggatgatgatggatatcgtgttta 290  Q
    |||||||||||  | | | |||||||| | |  |||||||||||  |||||||||| ||||||||| || || | |||| ||||||||    
T  37986767 gcttgggtgtttcggtctgggagttttatttggagggtgttctttgtgggtgagtaatgacgatgggtggtggtagataccgtgttta 37986680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 104 - 290
Target Start/End: Complemental strand, 24995404 - 24995216
Alignment:
Q  104 tttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggctta 203  Q
    ||||||||||||||||||| ||||||| || | |   ||||||||||||||||||||||||||||||| |||| |||||||||||||||||| ||||| |    
T  24995404 tttttgggctttgtgttgtgctctttcagtgggtcagaggtcgcgaggtttgtgatagctgcatgatccttcggttaggtgctcttcgaaatatggctca 24995305  T
Q  204 gcttgggtgtt-aggattttggagtttt-tctttagggtgttcttcatgggtgagtagtgacgatggatgatgatggatatcgtgttta 290  Q
    |||||||||||  || | | |||||||| | || |||||||||||  || |||||||||||||||||  | || |||||| ||||||||    
T  24995304 gcttgggtgttgggggtctaggagttttattttgagggtgttctttgtgcgtgagtagtgacgatgggcggtggtggataccgtgttta 24995216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 104 - 268
Target Start/End: Complemental strand, 32066304 - 32066139
Alignment:
Q  104 tttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggctta 203  Q
    ||||||||||||||||||| |||||||||| | |   |||| ||||||||||||||||||||||||||||||| |||| ||||||| ||||||||| | |    
T  32066304 tttttgggctttgtgttgtgctctttcggtggttcagaggttgcgaggtttgtgatagctgcatgatcattcggttagatgctctttgaaatgtggttca 32066205  T
Q  204 gcttgggtgttaggattttggagtttt-tctttagggtgttcttcatgggtgagtagtgacgatgg 268  Q
    ||||||||||| || | |  ||||||| | |  |||||||||||  || |||||||||||||||||    
T  32066204 gcttgggtgttggggtctgagagttttatttggagggtgttctttgtgagtgagtagtgacgatgg 32066139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 104 - 290
Target Start/End: Complemental strand, 41893410 - 41893224
Alignment:
Q  104 tttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggctta 203  Q
    ||||||||||||||||||| |||||| ||| | |   ||||||| ||||||||||||||||||||||| ||| | ||||| ||||||||||||||||| |    
T  41893410 tttttgggctttgtgttgtgctcttttggtggttaagaggtcgcaaggtttgtgatagctgcatgatccttc-tataggtactcttcgaaatgtggctca 41893312  T
Q  204 gcttgggtgttaggattttggagtt-tttctttagggtgttcttcatgggtgagtagtgacgatggatgatgatggatatcgtgttta 290  Q
    |||||||||||  | | | |||||| | | || |||||||||||  ||||||||||||||||||||  | || |||||| ||||||||    
T  41893311 gcttgggtgttgaggtctgggagttctattttcagggtgttctttgtgggtgagtagtgacgatggtcggtggtggataccgtgttta 41893224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 104 - 210
Target Start/End: Complemental strand, 16457470 - 16457364
Alignment:
Q  104 tttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggctta 203  Q
    ||||| ||||||||||||| |||||||||| | | | | |||| |||||||||||||||||||||||| |  | |||||||||||| ||||||||||| |    
T  16457470 tttttaggctttgtgttgtgctctttcggtggttcggatgtcgtgaggtttgtgatagctgcatgatcttgtggttaggtgctctttgaaatgtggctca 16457371  T
Q  204 gcttggg 210  Q
    |||||||    
T  16457370 gcttggg 16457364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 104 - 266
Target Start/End: Complemental strand, 34389014 - 34388852
Alignment:
Q  104 tttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggctta 203  Q
    ||||||||||||||||||| || ||||||| ||| | |||||| ||||||||||||||||   ||||| |||  ||||||| |||||   |||||||| |    
T  34389014 tttttgggctttgtgttgtgctatttcggtggatcgtaggtcgtgaggtttgtgatagct-agtgatccttcagttaggtgttcttcatcatgtggctca 34388916  T
Q  204 gcttgggtgttaggattttggagtttt-tctttagggtgttcttcatgggtgagtagtgacgat 266  Q
    ||||||||||| || | |  ||||||| | || |||||||||||  ||||||||||||||||||    
T  34388915 gcttgggtgttggggtatgagagttttattttgagggtgttctttgtgggtgagtagtgacgat 34388852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 135 - 214
Target Start/End: Original strand, 22773602 - 22773681
Alignment:
Q  135 gattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggcttagcttgggtgtt 214  Q
    ||||| ||||| |||||||||||||| || ||||||| |||  |||||||||||||||||||||||| || |||||||||    
T  22773602 gattggaggtcacgaggtttgtgatatctacatgatccttctgttaggtgctcttcgaaatgtggctcagtttgggtgtt 22773681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 104 - 201
Target Start/End: Original strand, 36630909 - 36631006
Alignment:
Q  104 tttttgggcttt-gtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggct 201  Q
    |||||||||||| || |||| |||||||| | ||| | ||||||||||||| |||  |||||||||||| |||| | ||||||||||||||||||||||    
T  36630909 tttttgggcttttgttttgtgctctttcgatggatcggaggtcgcgaggtt-gtgggagctgcatgatccttcggtcaggtgctcttcgaaatgtggct 36631006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 236 - 295
Target Start/End: Complemental strand, 16457351 - 16457292
Alignment:
Q  236 agggtgttcttcatgggtgagtagtgacgatggatgatgatggatatcgtgtttatagtg 295  Q
    |||||| |||| |||||||||||||||||||||| | || |||||| |||||||| ||||    
T  16457351 agggtggtctttatgggtgagtagtgacgatggacggtggtggataccgtgtttacagtg 16457292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 83; Significance: 3e-39; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 94 - 295
Target Start/End: Complemental strand, 24449948 - 24449747
Alignment:
Q  94 ttaagttggttttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaa 193  Q
    |||||||||||||| ||| |||||||||| |||||| ||| ||| | ||||||||||||||||||||| ||||||||| |||| ||||||||||||||||    
T  24449948 ttaagttggttttt-gggatttgtgttgtgctcttttggtggatcggaggtcgcgaggtttgtgatagttgcatgatccttcggttaggtgctcttcgaa 24449850  T
Q  194 atgtggcttagcttgggtgttaggattttggagtttt-tctttagggtgttcttcatgggtgagtagtgacgatggatgatgatggatatcgtgtttata 292  Q
    ||| |||| |||||||||||| || | | |||||||| | || |||||||| ||  ||||||||||||||||||||  | || |||||| |||||||| |    
T  24449849 atgcggctcagcttgggtgttggggtctaggagttttattttgagggtgttatttgtgggtgagtagtgacgatgggcggtggtggataccgtgtttaca 24449750  T
Q  293 gtg 295  Q
    |||    
T  24449749 gtg 24449747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 104 - 295
Target Start/End: Complemental strand, 46692828 - 46692636
Alignment:
Q  104 tttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggctta 203  Q
    ||||||||||||||||||| |||||||||| | | | ||||||||||||||||||||||||||| ||| | || ||| |||||||||||||||||||| |    
T  46692828 tttttgggctttgtgttgtgctctttcggtggttcggaggtcgcgaggtttgtgatagctgcattatcctccggttaagtgctcttcgaaatgtggctca 46692729  T
Q  204 gcttgggtgttaggattttggagtttt-tctttagggtgttcttcatgggtgagtagtgacgatggatgatgatggatatcgtgtttatagtg 295  Q
    ||||||||||| || | | | |||||| | |  |||||||||||  ||||||||||||||||||||  | || | ||||||||||||| ||||    
T  46692728 gcttgggtgttggggtctggaagttttatttggagggtgttctttgtgggtgagtagtgacgatgggcggtggttgatatcgtgtttacagtg 46692636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 104 - 295
Target Start/End: Original strand, 5459233 - 5459425
Alignment:
Q  104 tttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggctta 203  Q
    ||||||||||||||||||| ||||||| || | | | |||| |||||||||||||||||||||||||| |||  |||||||||||| ||||||||||| |    
T  5459233 tttttgggctttgtgttgtgctctttcagtggttcggaggttgcgaggtttgtgatagctgcatgatccttcagttaggtgctctttgaaatgtggctca 5459332  T
Q  204 gcttgggtgttaggattttggagtttt-tctttagggtgttcttcatgggtgagtagtgacgatggatgatgatggatatcgtgtttatagtg 295  Q
    ||||||||||| || | | | |||||| | || | |||||||||  ||||||||||||||||||||  | || |||||| |||||||| ||||    
T  5459333 gcttgggtgttggggtctggaagttttattttgatggtgttctttgtgggtgagtagtgacgatgggcggtggtggataccgtgtttacagtg 5459425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 104 - 263
Target Start/End: Complemental strand, 31585769 - 31585608
Alignment:
Q  104 tttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggctta 203  Q
    ||||||||||||||||||| || ||||||| | | | |||||||||||||||||||||||| |||||| || | |||||||||||||||||||||||| |    
T  31585769 tttttgggctttgtgttgtgctatttcggtgggtcggaggtcgcgaggtttgtgatagctgtatgatcctttggttaggtgctcttcgaaatgtggctaa 31585670  T
Q  204 gcttgggtgttaggattttg-gagtttt-tctttagggtgttcttcatgggtgagtagtgac 263  Q
    ||||||||||| ||  | || ||||||| | || |||||||||||  |||||||||||||||    
T  31585669 gcttgggtgttgggggtctgagagttttattttgagggtgttctttgtgggtgagtagtgac 31585608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 104 - 290
Target Start/End: Complemental strand, 5389430 - 5389244
Alignment:
Q  104 tttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggctta 203  Q
    ||||||||||||||||||| |||||||||| | | | ||||||||||||||||| ||||| |||| || |||| ||| ||||||||||| |||||||| |    
T  5389430 tttttgggctttgtgttgtgctctttcggtggttcggaggtcgcgaggtttgtgttagctacatggtccttcggttaagtgctcttcgatatgtggctca 5389331  T
Q  204 gcttgggtgttaggattttggagtttt-tctttagggtgttcttcatgggtgagtagtgacgatggatgatgatggatatcgtgttta 290  Q
    ||||||||||| || | | |||||||| | || |||||||||||  |  |||||||||||||||||  | || |||||| ||||||||    
T  5389330 gcttgggtgttggggtctgggagttttattttgagggtgttctt-gtaagtgagtagtgacgatgggcggtggtggataccgtgttta 5389244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 105 - 266
Target Start/End: Original strand, 41920525 - 41920692
Alignment:
Q  105 ttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgat-----cattcgtttaggtgctcttcgaaatgtgg 199  Q
    |||||||||||||||||| |||||||||| ||| | ||||||||||||||||||||||||||||||     | |||  |||||||||||||   ||||||    
T  41920525 ttttgggctttgtgttgtgctctttcggtggatcggaggtcgcgaggtttgtgatagctgcatgatcctaaccttcagttaggtgctcttcatcatgtgg 41920624  T
Q  200 cttagcttgggtgttaggattttggagtttt-tctttagggtgttcttcatgggtgagtagtgacgat 266  Q
    || |||||||||||| || | |||||||||| | || |||||||| ||  ||||||||||||||||||    
T  41920625 ctcagcttgggtgttggggtcttggagttttattttgagggtgttttttgtgggtgagtagtgacgat 41920692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 105 - 219
Target Start/End: Complemental strand, 30685912 - 30685798
Alignment:
Q  105 ttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggcttag 204  Q
    |||||||||||||||||| |||||||||| | | | ||||||||||||||||||||||||||||||| || | |||||||||| | || |||||||| ||    
T  30685912 ttttgggctttgtgttgtgctctttcggtggttcggaggtcgcgaggtttgtgatagctgcatgatcctttggttaggtgctccttgatatgtggctcag 30685813  T
Q  205 cttgggtgttaggat 219  Q
    |||||||||| ||||    
T  30685812 cttgggtgttgggat 30685798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 139 - 269
Target Start/End: Complemental strand, 6764355 - 6764224
Alignment:
Q  139 gaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggcttagcttgggtgttaggattttggagtttt-tctttag 237  Q
    ||||| || ||||||||||||||||||||| || |||| |||||||||||||||||||||||| | ||||| |  | || | | |||||||| | || ||    
T  6764355 gaagggcgtgaggtttgtgatagctgcatggtccttcggttaggtgctcttcgaaatgtggctcaacttggatactggggtctgggagttttattttcag 6764256  T
Q  238 ggtgttcttcatgggtgagtagtgacgatgga 269  Q
    | |||||||  |||||||||||||||||||||    
T  6764255 gatgttctttgtgggtgagtagtgacgatgga 6764224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 97 - 201
Target Start/End: Complemental strand, 24684493 - 24684390
Alignment:
Q  97 agttggttttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatg 196  Q
    ||||||||||| ||  ||||| |||| |||||||||| ||| | ||||||||||||| |||  || ||||||||| |||| | |||||||||||||||||    
T  24684493 agttggtttttgggcttttgttttgtgctctttcggtggatcggaggtcgcgaggtt-gtggaagatgcatgatccttcggtcaggtgctcttcgaaatg 24684395  T
Q  197 tggct 201  Q
    |||||    
T  24684394 tggct 24684390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 295
Target Start/End: Original strand, 32882585 - 32882630
Alignment:
Q  250 gggtgagtagtgacgatggatgatgatggatatcgtgtttatagtg 295  Q
    ||||||||||||||||||| || || ||||||||||||||| ||||    
T  32882585 gggtgagtagtgacgatgggtggtgttggatatcgtgtttacagtg 32882630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 104 - 268
Target Start/End: Original strand, 8255099 - 8255264
Alignment:
Q  104 tttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggctta 203  Q
    |||||||||||||| |||| |||||||||| ||| | ||||||||||||||||||||||||| |||||  ||  |||||||||||||| ||||||||| |    
T  8255099 tttttgggctttgttttgtgctctttcggtggatcggaggtcgcgaggtttgtgatagctgcttgatccatcagttaggtgctcttcgtaatgtggctca 8255198  T
Q  204 gcttgggtgttaggattttggagtttt-tctttagggtgttcttcatgggtgagtagtgacgatgg 268  Q
    |||||||||||||| | |  ||||||| | || |||||||||||  ||||||||||||||||||||    
T  8255199 gcttgggtgttagggtctgtgagttttattttgagggtgttctttgtgggtgagtagtgacgatgg 8255264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 104 - 268
Target Start/End: Original strand, 8268517 - 8268682
Alignment:
Q  104 tttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggctta 203  Q
    |||||||||||||| |||| |||||||||| ||| | ||||||||||||||||||||||||| |||||  ||  |||||||||||||| ||||||||| |    
T  8268517 tttttgggctttgttttgtgctctttcggtggatcggaggtcgcgaggtttgtgatagctgcttgatccatcagttaggtgctcttcgtaatgtggctca 8268616  T
Q  204 gcttgggtgttaggattttggagtttt-tctttagggtgttcttcatgggtgagtagtgacgatgg 268  Q
    |||||||||||||| | |  ||||||| | || |||||||||||  ||||||||||||||||||||    
T  8268617 gcttgggtgttagggtctgtgagttttattttgagggtgttctttgtgggtgagtagtgacgatgg 8268682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 104 - 200
Target Start/End: Original strand, 30964513 - 30964609
Alignment:
Q  104 tttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggc 200  Q
    |||||||| |||||||||| |||||| ||| | | | |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  30964513 tttttgggttttgtgttgtgctcttttggtggttcggaggtcgcgaggtttgtgatagctgcatgatcattcggttaggtgctcttcgaaatgtggc 30964609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 104 - 264
Target Start/End: Complemental strand, 30167573 - 30167412
Alignment:
Q  104 tttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggctta 203  Q
    |||||||| |||||||||| |||||||||| |   | |||||||||||||| |||||||||||||| | |||| ||| | |||||||||||||||||  |    
T  30167573 tttttggggtttgtgttgtgctctttcggtggtccggaggtcgcgaggtttatgatagctgcatgacccttcggttaagcgctcttcgaaatgtggccca 30167474  T
Q  204 gcttgggtgttaggattttggagtttt-tctttagggtgttcttcatgggtgagtagtgacg 264  Q
     |||||||||| || | | |||||||| | || |||||||||||  ||||||||| ||||||    
T  30167473 acttgggtgttggggtatgggagttttattttgagggtgttctttgtgggtgagtggtgacg 30167412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 104 - 258
Target Start/End: Original strand, 4305797 - 4305951
Alignment:
Q  104 tttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggctta 203  Q
    ||||| ||||||||||||| |||||| ||| |     ||||||| |||||||||||| |||||||||| |||| | |||||||||||| ||||||||| |    
T  4305797 tttttaggctttgtgttgtgctcttttggtggtccagaggtcgcaaggtttgtgataactgcatgatccttcggtgaggtgctcttcg-aatgtggctca 4305895  T
Q  204 gcttgggtgttaggattttggagtttt-tctttagggtgttcttcatgggtgagta 258  Q
     ||||||| || || ||| |||||||| | || |||||| ||||  ||||||||||    
T  4305896 acttgggtatttgggtttgggagttttattttcagggtgatctttgtgggtgagta 4305951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 250 - 299
Target Start/End: Complemental strand, 31050523 - 31050474
Alignment:
Q  250 gggtgagtagtgacgatggatgatgatggatatcgtgtttatagtgtttg 299  Q
    ||||||||||||||||||||||||| ||||| | ||||||| ||||||||    
T  31050523 gggtgagtagtgacgatggatgatggtggatgttgtgtttacagtgtttg 31050474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0343 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 104 - 268
Target Start/End: Original strand, 5777 - 5943
Alignment:
Q  104 tttttgggctttgtgtt-gtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggctt 202  Q
    |||||||||||||| || || |||||||||||||| | ||||||| ||||||||||||||| | ||||| |||| |||||||||||||| |||||||||     
T  5777 tttttgggctttgtttttgtgctctttcggtagatcggaggtcgcaaggtttgtgatagctacttgatccttcggttaggtgctcttcgtaatgtggctc 5876  T
Q  203 agcttgggtgttaggattttggagtttt-tctttagggtgttcttcatgggtgagtagtgacgatgg 268  Q
    |||||||||||| |||| | |||||||| | || |||||||| ||  |||||||||||||| |||||    
T  5877 agcttgggtgttgggatctgggagttttattttgagggtgttttttgtgggtgagtagtgatgatgg 5943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 94 - 246
Target Start/End: Complemental strand, 35790 - 35640
Alignment:
Q  94 ttaagttggttttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaa 193  Q
    |||||||||||||| ||||||| |||||| |||||||||| ||| | ||||| |||| ||||||||||||||||||||  ||| ||||||||||||||||    
T  35790 ttaagttggttttt-gggctttatgttgtgctctttcggtggatcggaggtcacgagatttgtgatagctgcatgatccatcggttaggtgctcttcgaa 35692  T
Q  194 atgtggcttagcttgggtgttaggattttggagtttttctttagggtgttctt 246  Q
    ||| |||| |||||||||||| || | | ||||||||| ||||| ||||||||    
T  35691 atgaggctcagcttgggtgttggggtgtgggagttttt-tttagagtgttctt 35640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 104 - 267
Target Start/End: Original strand, 3117565 - 3117729
Alignment:
Q  104 tttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggctta 203  Q
    ||||||||||||||||||| ||||||  || | | | ||||||||||||||||||||| ||||||||| |||| ||| |||||||||||||||||||| |    
T  3117565 tttttgggctttgtgttgtgctctttatgtggttcggaggtcgcgaggtttgtgatagttgcatgatccttcgattatgtgctcttcgaaatgtggctca 3117664  T
Q  204 gcttgggtgttaggattttggagtttt-tctttagggtgttcttcatgggtgagtagtgacgatg 267  Q
     |||||||||| || | | |||||||| | | ||||||||||||  ||||| ||||| |||||||    
T  3117665 acttgggtgttggggtctgggagttttatttatagggtgttctttgtgggtaagtagagacgatg 3117729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 167 - 268
Target Start/End: Original strand, 10541967 - 10542069
Alignment:
Q  167 tgatcattcgtttaggtgctcttcgaaatgtggcttagcttgggtgttaggattttggagtttt-tctttagggtgttcttcatgggtgagtagtgacga 265  Q
    ||||| |||| |||||||||||||||||||||||| |||||||||||| || | | | |||||| | |  ||||| |||||  |||||||||||||||||    
T  10541967 tgatccttcggttaggtgctcttcgaaatgtggctcagcttgggtgttggggtctggaagttttatttggagggtattctttgtgggtgagtagtgacga 10542066  T
Q  266 tgg 268  Q
    |||    
T  10542067 tgg 10542069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 295
Target Start/End: Original strand, 14663231 - 14663341
Alignment:
Q  186 tcttcgaaatgtggcttagcttgggtgttaggattttggagtttttcttt-agggtgttcttcatgggtgagtagtgacgatggatgatgatggatatcg 284  Q
    ||||||||||||||||  |||||| |||| || ||| ||||||||  ||| ||| |||||||   |||||||||||||||||||  | || ||||||| |    
T  14663231 tcttcgaaatgtggctcggcttggatgttggggtttgggagttttattttgaggatgttctttgcgggtgagtagtgacgatgggcggtggtggatattg 14663330  T
Q  285 tgtttatagtg 295  Q
    |||||| ||||    
T  14663331 tgtttacagtg 14663341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University