View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21051_low_1 (Length: 567)
Name: NF21051_low_1
Description: NF21051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21051_low_1 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 437; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 1 - 558
Target Start/End: Complemental strand, 6923230 - 6922673
Alignment:
| Q |
1 |
tatttaagaggaaaccacgtattaaccctttatttattacattaannnnnnnncgtctaataacttattatgtttcttaaatttagagacaaaataggaa |
100 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||| |
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| T |
6923230 |
tatttaagaggaaaccacatattaaccctttatttattacattaattttttttcgtctgataacttattatgtttcttcaatttagagacaaaataggaa |
6923131 |
T |
|
| Q |
101 |
agatataataatttagtaaatagaaggtcaacatttatttatctattacatttcttcaataacaaaataggaaagatatcctctnnnnnnntaatttaag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |
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| T |
6923130 |
agatataataatttagtaaatagaaggtcaacatttatttatctattacatttcttcaataacaatataggaaagatatcctctaaaaaaataatttaag |
6923031 |
T |
|
| Q |
201 |
aaggaaagatatgctaatttggtaaatagaaggtcaacttataagcgtgtattacaacattatctttgtctgtctttacatagtatacatcacaggacat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6923030 |
aaggaaagatatgctaatttggtaaatagaaggtcaacttataagcgtgtattacaacattatctttgtctgtctttacatagtatacatcacaggacat |
6922931 |
T |
|
| Q |
301 |
ttgttcagtgttacatcagactcagagcaatggcaacagtaggaagaatgaagttaggatcacaaggcatggaagtatccttacaaggacttggttgcat |
400 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |
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| T |
6922930 |
ttgttctgtgttacatcagactcagagcaatggcaacagtaggaagaatgaagttaggatcacaagggatggaagtgtccttacaaggacttggttgcat |
6922831 |
T |
|
| Q |
401 |
gagcatgtctgctttctatggccctcctaaacctcaaactgacatgattgctctcatccaccatgccatacaatctggtgtcacttttcttgatacctct |
500 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| || |||| |||||| |||||||||||||||| |||||||||||||||||||||||||| || ||| |
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| T |
6922830 |
gagcatgtctgctttctatggtcctcctaaacctgaacctgatatgatttctctcatccaccatgctatacaatctggtgtcacttttcttgacacttct |
6922731 |
T |
|
| Q |
501 |
gacatatatggccctcacaccaacgaactccttcttggaaaggttaccactttctctt |
558 |
Q |
| |
|
||||| ||||||||||||||||| ||| | |||||||||||||||||||||||||||| |
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|
| T |
6922730 |
gacatttatggccctcacaccaatgaagttcttcttggaaaggttaccactttctctt |
6922673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 1 - 558
Target Start/End: Original strand, 6954982 - 6955539
Alignment:
| Q |
1 |
tatttaagaggaaaccacgtattaaccctttatttattacattaannnnnnnncgtctaataacttattatgtttcttaaatttagagacaaaataggaa |
100 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||| |||||||||| |
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| T |
6954982 |
tatttaagaggaaaccacatattaaccctttatttattacattaattttttttcgtctgataacttattatgtttcttcaatttagagataaaataggaa |
6955081 |
T |
|
| Q |
101 |
agatataataatttagtaaatagaaggtcaacatttatttatctattacatttcttcaataacaaaataggaaagatatcctctnnnnnnntaatttaag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |
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|
| T |
6955082 |
agatataataatttagtaaatagaaggtcaacatttatttatctattacatttcttcaataacaatataggaaagatatcctctaaaaaaataatttaag |
6955181 |
T |
|
| Q |
201 |
aaggaaagatatgctaatttggtaaatagaaggtcaacttataagcgtgtattacaacattatctttgtctgtctttacatagtatacatcacaggacat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6955182 |
aaggaaagatatgctaatttggtaaatagaaggtcaacttataagcgtgtattacaacattatctttgtctgtctttacatagtatacatcacaggacat |
6955281 |
T |
|
| Q |
301 |
ttgttcagtgttacatcagactcagagcaatggcaacagtaggaagaatgaagttaggatcacaaggcatggaagtatccttacaaggacttggttgcat |
400 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |
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|
| T |
6955282 |
ttgttctgtgttacatcagactcagagcaatggcaacagtaggaagaatgaagttaggatcacaagggatggaagtgtccttacaaggacttggttgcat |
6955381 |
T |
|
| Q |
401 |
gagcatgtctgctttctatggccctcctaaacctcaaactgacatgattgctctcatccaccatgccatacaatctggtgtcacttttcttgatacctct |
500 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| || |||| |||||| |||||||||||||||| |||||||||||||||||||||||||| || ||| |
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|
| T |
6955382 |
gagcatgtctgctttctatggtcctcctaaacctgaacctgatatgatttctctcatccaccatgctatacaatctggtgtcacttttcttgacacttct |
6955481 |
T |
|
| Q |
501 |
gacatatatggccctcacaccaacgaactccttcttggaaaggttaccactttctctt |
558 |
Q |
| |
|
||||| ||||||||||||||||| ||| | |||||||||||||||||||||||||||| |
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|
| T |
6955482 |
gacatttatggccctcacaccaatgaagttcttcttggaaaggttaccactttctctt |
6955539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 318 - 567
Target Start/End: Complemental strand, 6970239 - 6969990
Alignment:
| Q |
318 |
agactcagagcaatggcaacagtaggaagaatgaagttaggatcacaaggcatggaagtatccttacaaggacttggttgcatgagcatgtctgctttct |
417 |
Q |
| |
|
||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6970239 |
agactaagaacaatggcaacagtaggaagaatgaagttaggatcacaaggcatggaagtatccttacaaggacttggttgcatgagcatgtctgctttct |
6970140 |
T |
|
| Q |
418 |
atggccctcctaaacctcaaactgacatgattgctctcatccaccatgccatacaatctggtgtcacttttcttgatacctctgacatatatggccctca |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6970139 |
atggccctcctaaacctcaaactgacatgattgctctcatccaccatgccatacaatctggtgtcacttttcttgatacctctgacatatatggccctca |
6970040 |
T |
|
| Q |
518 |
caccaacgaactccttcttggaaaggttaccactttctcttcgctttcat |
567 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6970039 |
caccaacgaactccttcttggaaaggttaccactttctcttcgctttcat |
6969990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 338 - 566
Target Start/End: Original strand, 6917964 - 6918192
Alignment:
| Q |
338 |
agtaggaagaatgaagttaggatcacaaggcatggaagtatccttacaaggacttggttgcatgagcatgtctgctttctatggccctcctaaacctcaa |
437 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || |
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|
| T |
6917964 |
agtaggaagaatgaagttaggatcacaaggcatggaagtgtccttacaaggacttggttgcatgagcatgtctgctttctatggtcctcctaaacctgaa |
6918063 |
T |
|
| Q |
438 |
actgacatgattgctctcatccaccatgccatacaatctggtgtcacttttcttgatacctctgacatatatggccctcacaccaacgaactccttcttg |
537 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| | ||||| ||||||||||| ||| | ||||||| |
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|
| T |
6918064 |
cctgacatgattgctctcattcaccatgccatacaatctggtgtcacttttcttgatacttctgacttctatggacctcacaccaatgaagttcttcttg |
6918163 |
T |
|
| Q |
538 |
gaaaggttaccactttctcttcgctttca |
566 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
6918164 |
gaaaggttaccactttctcttcgctttca |
6918192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 328 - 552
Target Start/End: Complemental strand, 6918720 - 6918496
Alignment:
| Q |
328 |
caatggcaacagtaggaagaatgaagttaggatcacaaggcatggaagtatccttacaaggacttggttgcatgagcatgtctgctttctatggccctcc |
427 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
6918720 |
caatggcaacagtaggaagaatgaagttaggatcacaagggatggaagtatccttacaaggacttggttgcatgagcatgtcagctttctatggtcctcc |
6918621 |
T |
|
| Q |
428 |
taaacctcaaactgacatgattgctctcatccaccatgccatacaatctggtgtcacttttcttgatacctctgacatatatggccctcacaccaacgaa |
527 |
Q |
| |
|
||| ||| || |||| |||||| |||||||||||||||| |||||||||||||||||||||||||| || ||||| || ||||||||||||||||| ||| |
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|
| T |
6918620 |
taagcctgaatctgatatgatttctctcatccaccatgctatacaatctggtgtcacttttcttgacacttctgatatttatggccctcacaccaatgaa |
6918521 |
T |
|
| Q |
528 |
ctccttcttggaaaggttaccactt |
552 |
Q |
| |
|
| |||||||||||||||||||||| |
|
|
| T |
6918520 |
gttcttcttggaaaggttaccactt |
6918496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 328 - 552
Target Start/End: Original strand, 6923427 - 6923651
Alignment:
| Q |
328 |
caatggcaacagtaggaagaatgaagttaggatcacaaggcatggaagtatccttacaaggacttggttgcatgagcatgtctgctttctatggccctcc |
427 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |
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|
| T |
6923427 |
caatggcaacagtaggaagaatgaagttaggatcacaagggatggaagtatccttacaaggacttggttgcatgagcatgtcagctttctatggtcctcc |
6923526 |
T |
|
| Q |
428 |
taaacctcaaactgacatgattgctctcatccaccatgccatacaatctggtgtcacttttcttgatacctctgacatatatggccctcacaccaacgaa |
527 |
Q |
| |
|
||| ||| || |||| |||||| |||||||||||||||| |||||||||||||||||||||||||| || ||||| || ||||| ||||||||||| ||| |
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|
| T |
6923527 |
taagcctgaatctgatatgatttctctcatccaccatgctatacaatctggtgtcacttttcttgacacttctgatatttatggtcctcacaccaatgaa |
6923626 |
T |
|
| Q |
528 |
ctccttcttggaaaggttaccactt |
552 |
Q |
| |
|
| |||||||||||||||||||||| |
|
|
| T |
6923627 |
gttcttcttggaaaggttaccactt |
6923651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 324 - 523
Target Start/End: Complemental strand, 6923877 - 6923678
Alignment:
| Q |
324 |
agagcaatggcaacagtaggaagaatgaagttaggatcacaaggcatggaagtatccttacaaggacttggttgcatgagcatgtctgctttctatggcc |
423 |
Q |
| |
|
||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
6923877 |
agagcaatgacaaaagtaggaagaatgaagttaggatcacaaggcatggaagtgtccttacaaggacttggttgcatgagcatgtctgctttctatggtc |
6923778 |
T |
|
| Q |
424 |
ctcctaaacctcaaactgacatgattgctctcatccaccatgccatacaatctggtgtcacttttcttgatacctctgacatatatggccctcacaccaa |
523 |
Q |
| |
|
||||||||||| || ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| | ||||| ||||||||||| |
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|
| T |
6923777 |
ctcctaaacctgaacctgacatgattgctctcattcaccatgccatacaatctggtgtcacttttcttgatacttctgacttctatggacctcacaccaa |
6923678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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