View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21051_low_3 (Length: 255)

Name: NF21051_low_3
Description: NF21051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21051_low_3
NF21051_low_3
[»] chr8 (28 HSPs)
chr8 (144-236)||(2416044-2416136)
chr8 (35-151)||(39601635-39601754)
chr8 (5-71)||(22547483-22547549)
chr8 (5-50)||(26451541-26451586)
chr8 (5-53)||(3395924-3395972)
chr8 (35-148)||(34366846-34366961)
chr8 (35-107)||(39939238-39939313)
chr8 (5-52)||(18441408-18441455)
chr8 (35-90)||(38604271-38604328)
chr8 (5-50)||(41858090-41858135)
chr8 (35-71)||(22550888-22550924)
chr8 (5-53)||(38871831-38871879)
chr8 (5-56)||(37779707-37779758)
chr8 (35-90)||(44933852-44933909)
chr8 (76-148)||(7577050-7577123)
chr8 (35-71)||(2335171-2335207)
chr8 (35-71)||(5533048-5533084)
chr8 (35-71)||(27501614-27501650)
chr8 (35-71)||(28617582-28617618)
chr8 (35-71)||(32584066-32584102)
chr8 (35-148)||(41250095-41250210)
chr8 (35-90)||(41016407-41016464)
chr8 (93-150)||(27703993-27704050)
chr8 (5-50)||(41274653-41274698)
chr8 (35-63)||(39505-39533)
chr8 (35-63)||(1114765-1114793)
chr8 (5-45)||(24860448-24860488)
chr8 (35-71)||(43363283-43363319)
[»] chr1 (35 HSPs)
chr1 (5-148)||(44596795-44596941)
chr1 (11-148)||(49426648-49426787)
chr1 (5-59)||(27487633-27487687)
chr1 (35-157)||(51271614-51271739)
chr1 (35-125)||(94367-94459)
chr1 (5-57)||(14174878-14174930)
chr1 (35-149)||(29765552-29765669)
chr1 (5-50)||(29763186-29763231)
chr1 (5-50)||(42572724-42572769)
chr1 (5-50)||(49395664-49395709)
chr1 (35-107)||(46886410-46886485)
chr1 (5-50)||(49927468-49927513)
chr1 (35-71)||(19161906-19161942)
chr1 (35-90)||(4883226-4883283)
chr1 (5-42)||(13972131-13972168)
chr1 (5-46)||(51269003-51269044)
chr1 (35-71)||(586628-586664)
chr1 (35-71)||(19914480-19914516)
chr1 (5-41)||(26637223-26637259)
chr1 (35-71)||(30194435-30194471)
chr1 (35-71)||(49661756-49661792)
chr1 (35-66)||(9710597-9710628)
chr1 (35-90)||(2425708-2425765)
chr1 (9-50)||(6434809-6434850)
chr1 (35-68)||(44598929-44598962)
chr1 (38-71)||(48228328-48228361)
chr1 (35-63)||(6562184-6562212)
chr1 (35-63)||(15047304-15047332)
chr1 (35-63)||(20349479-20349507)
chr1 (35-63)||(30910026-30910054)
chr1 (5-41)||(36908640-36908676)
chr1 (35-63)||(41453860-41453888)
chr1 (35-63)||(44470034-44470062)
chr1 (35-71)||(49429158-49429194)
chr1 (35-63)||(52802152-52802180)
[»] chr4 (41 HSPs)
chr4 (5-71)||(34530762-34530828)
chr4 (35-151)||(16984184-16984303)
chr4 (5-129)||(39588045-39588172)
chr4 (35-151)||(39590591-39590710)
chr4 (5-58)||(34154395-34154448)
chr4 (37-125)||(16983479-16983570)
chr4 (35-154)||(28081387-28081508)
chr4 (5-58)||(6283434-6283487)
chr4 (5-58)||(51429296-51429349)
chr4 (5-50)||(56138313-56138358)
chr4 (5-62)||(56304899-56304956)
chr4 (35-148)||(44674099-44674214)
chr4 (5-50)||(958561-958606)
chr4 (5-50)||(44561297-44561342)
chr4 (5-52)||(243312-243359)
chr4 (35-90)||(21022911-21022968)
chr4 (35-90)||(40833633-40833690)
chr4 (5-50)||(1041996-1042041)
chr4 (34-71)||(28084012-28084049)
chr4 (5-50)||(29700269-29700314)
chr4 (5-49)||(4786301-4786345)
chr4 (35-71)||(14200575-14200611)
chr4 (21-53)||(37865200-37865232)
chr4 (35-71)||(38369205-38369241)
chr4 (35-71)||(46254471-46254507)
chr4 (35-96)||(50274747-50274810)
chr4 (35-71)||(51492085-51492121)
chr4 (35-66)||(50278821-50278852)
chr4 (5-52)||(42885508-42885557)
chr4 (55-118)||(49892418-49892483)
chr4 (38-71)||(23220692-23220725)
chr4 (35-89)||(51037491-51037547)
chr4 (35-63)||(3403869-3403897)
chr4 (35-71)||(7485684-7485720)
chr4 (35-63)||(9890016-9890044)
chr4 (35-63)||(15995744-15995772)
chr4 (35-63)||(19069209-19069237)
chr4 (35-63)||(19073678-19073706)
chr4 (26-62)||(40354590-40354626)
chr4 (35-71)||(49889697-49889733)
chr4 (35-71)||(51036517-51036553)
[»] chr5 (25 HSPs)
chr5 (35-148)||(7757259-7757375)
chr5 (35-148)||(43094599-43094715)
chr5 (35-125)||(11345965-11346057)
chr5 (35-148)||(7762267-7762382)
chr5 (5-58)||(42865771-42865824)
chr5 (35-90)||(8539539-8539596)
chr5 (5-50)||(542757-542802)
chr5 (9-50)||(18307315-18307356)
chr5 (5-50)||(20192414-20192459)
chr5 (35-90)||(3891476-3891533)
chr5 (5-50)||(25497572-25497617)
chr5 (5-50)||(35564322-35564367)
chr5 (40-125)||(43093965-43094053)
chr5 (35-71)||(11348498-11348534)
chr5 (27-62)||(8576959-8576994)
chr5 (11-50)||(11346068-11346107)
chr5 (35-66)||(30887383-30887414)
chr5 (38-96)||(1397376-1397436)
chr5 (35-152)||(13568098-13568218)
chr5 (38-96)||(41798805-41798865)
chr5 (35-71)||(14686-14722)
chr5 (10-50)||(3600398-3600438)
chr5 (35-63)||(7021881-7021909)
chr5 (35-63)||(34122546-34122574)
chr5 (35-63)||(37820877-37820905)
[»] scaffold0176 (1 HSPs)
scaffold0176 (5-66)||(841-902)
[»] chr7 (23 HSPs)
chr7 (5-58)||(21188393-21188446)
chr7 (5-66)||(34139916-34139977)
chr7 (37-151)||(46738733-46738850)
chr7 (5-50)||(30355206-30355251)
chr7 (5-50)||(36394905-36394950)
chr7 (6-50)||(46863312-46863356)
chr7 (35-90)||(27657031-27657088)
chr7 (5-50)||(28980139-28980184)
chr7 (5-50)||(41047838-41047883)
chr7 (35-71)||(7083-7119)
chr7 (35-71)||(8070-8106)
chr7 (35-71)||(17840913-17840949)
chr7 (35-71)||(42583083-42583119)
chr7 (35-71)||(46908496-46908532)
chr7 (11-50)||(17838711-17838750)
chr7 (93-148)||(36185640-36185695)
chr7 (93-148)||(40323715-40323770)
chr7 (35-90)||(12210613-12210670)
chr7 (35-90)||(45258027-45258084)
chr7 (35-63)||(618748-618776)
chr7 (35-71)||(17838664-17838700)
chr7 (20-48)||(42682057-42682085)
chr7 (5-45)||(45364187-45364227)
[»] chr6 (22 HSPs)
chr6 (35-148)||(29076346-29076462)
chr6 (35-148)||(29109879-29109995)
chr6 (35-148)||(29111319-29111435)
chr6 (5-96)||(29061283-29061376)
chr6 (35-152)||(14012398-14012517)
chr6 (5-58)||(32034359-32034412)
chr6 (35-148)||(11840273-11840389)
chr6 (5-50)||(12783924-12783969)
chr6 (5-50)||(13401547-13401592)
chr6 (35-71)||(2109531-2109567)
chr6 (35-71)||(15888823-15888859)
chr6 (93-148)||(28362818-28362873)
chr6 (5-48)||(29065791-29065834)
chr6 (5-48)||(29074804-29074847)
chr6 (5-48)||(29079568-29079611)
chr6 (5-48)||(29107377-29107420)
chr6 (35-66)||(31771764-31771795)
chr6 (35-90)||(25554698-25554755)
chr6 (35-71)||(6760895-6760931)
chr6 (93-149)||(11687976-11688032)
chr6 (35-63)||(18347063-18347091)
chr6 (35-63)||(28362754-28362782)
[»] chr2 (27 HSPs)
chr2 (35-148)||(7189974-7190089)
chr2 (35-148)||(23347351-23347466)
chr2 (37-125)||(3943217-3943307)
chr2 (5-52)||(29093795-29093842)
chr2 (35-149)||(43870144-43870261)
chr2 (5-50)||(2920483-2920528)
chr2 (5-50)||(24512228-24512273)
chr2 (35-90)||(28477090-28477147)
chr2 (35-125)||(23346738-23346830)
chr2 (5-50)||(41500201-41500246)
chr2 (35-90)||(36510879-36510936)
chr2 (35-89)||(30803041-30803097)
chr2 (35-71)||(10425842-10425878)
chr2 (93-157)||(39377626-39377690)
chr2 (5-49)||(40679564-40679608)
chr2 (27-62)||(28472136-28472171)
chr2 (11-49)||(26858175-26858213)
chr2 (5-50)||(2648178-2648223)
chr2 (5-50)||(10365759-10365804)
chr2 (5-50)||(43491170-43491215)
chr2 (35-63)||(1096617-1096645)
chr2 (35-63)||(3795359-3795387)
chr2 (35-63)||(3803566-3803594)
chr2 (35-71)||(10424853-10424889)
chr2 (35-63)||(20951069-20951097)
chr2 (35-63)||(27276397-27276425)
chr2 (35-63)||(38945784-38945812)
[»] chr3 (54 HSPs)
chr3 (35-134)||(55385085-55385187)
chr3 (35-149)||(16647170-16647287)
chr3 (35-148)||(43478853-43478969)
chr3 (5-50)||(34694401-34694446)
chr3 (5-50)||(45101815-45101860)
chr3 (5-50)||(55207630-55207675)
chr3 (5-53)||(19454318-19454366)
chr3 (35-126)||(43476147-43476242)
chr3 (35-96)||(48246399-48246462)
chr3 (35-149)||(48250892-48251009)
chr3 (35-152)||(600567-600687)
chr3 (5-50)||(24703382-24703427)
chr3 (5-50)||(41803059-41803104)
chr3 (5-50)||(51402365-51402410)
chr3 (5-50)||(51696541-51696586)
chr3 (5-50)||(55385198-55385243)
chr3 (35-71)||(4002754-4002790)
chr3 (35-71)||(4004826-4004862)
chr3 (11-50)||(2271286-2271325)
chr3 (36-71)||(2271337-2271372)
chr3 (11-50)||(36134384-36134423)
chr3 (27-62)||(46402405-46402440)
chr3 (35-90)||(28817024-28817081)
chr3 (4-50)||(49219757-49219803)
chr3 (35-89)||(34543159-34543215)
chr3 (5-46)||(41137773-41137814)
chr3 (5-46)||(41577140-41577181)
chr3 (5-50)||(43476253-43476298)
chr3 (5-50)||(49609444-49609489)
chr3 (5-50)||(52570533-52570578)
chr3 (35-71)||(12897838-12897874)
chr3 (35-71)||(27739590-27739626)
chr3 (35-71)||(36134337-36134373)
chr3 (5-48)||(7245155-7245198)
chr3 (35-66)||(49219814-49219845)
chr3 (38-90)||(50998706-50998760)
chr3 (35-90)||(2267023-2267080)
chr3 (11-48)||(4004776-4004813)
chr3 (76-152)||(5138333-5138410)
chr3 (5-50)||(13896843-13896888)
chr3 (35-68)||(16484479-16484512)
chr3 (36-90)||(19750035-19750091)
chr3 (5-50)||(43568927-43568972)
chr3 (35-63)||(2743420-2743448)
chr3 (35-63)||(4002528-4002556)
chr3 (35-71)||(10492041-10492077)
chr3 (35-71)||(11249547-11249583)
chr3 (35-63)||(13743315-13743343)
chr3 (35-71)||(14043921-14043957)
chr3 (37-90)||(19988452-19988507)
chr3 (35-71)||(24703438-24703474)
chr3 (35-63)||(41137740-41137768)
chr3 (35-63)||(50953324-50953352)
chr3 (35-63)||(50957689-50957717)
[»] scaffold0199 (2 HSPs)
scaffold0199 (11-50)||(12361-12400)
scaffold0199 (38-71)||(12414-12447)
[»] scaffold0192 (1 HSPs)
scaffold0192 (8-50)||(18869-18911)
[»] scaffold0184 (1 HSPs)
scaffold0184 (42-151)||(18323-18435)
[»] scaffold0078 (1 HSPs)
scaffold0078 (42-151)||(54409-54521)
[»] scaffold0341 (1 HSPs)
scaffold0341 (35-63)||(17374-17402)
[»] scaffold0260 (1 HSPs)
scaffold0260 (35-63)||(11802-11830)


Alignment Details
Target: chr8 (Bit Score: 89; Significance: 5e-43; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 144 - 236
Target Start/End: Complemental strand, 2416136 - 2416044
Alignment:
Q  144 ttctcaaaatgaaatatgcatttacgaaataatccttggccgcgagaggaaagaacaaaggctaatgagtttcatttcatatctagtctagtc 236  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  2416136 ttctcaaaatgaaatatgcatttacgaaataatccttggccgcgagaggaaagaacaaaggctagtgagtttcatttcatatctagtctagtc 2416044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 35 - 151
Target Start/End: Complemental strand, 39601754 - 39601635
Alignment:
Q  35 tcctcggcagttaactgcagccggatttctaaaactt--gcatttaactgtcgag-ggggcaaaacgtcatttacttatgtggcagagccttatgcaacg 131  Q
    |||||||||||||||||||||||||||||||||||||  ||| ||||||||||||  ||  |||||||||||||||  ||||||| ||||||||| || |    
T  39601754 tcctcggcagttaactgcagccggatttctaaaacttcggcagttaactgtcgagaaggtaaaaacgtcatttactcgtgtggcacagccttatgtaatg 39601655  T
Q  132 tggaaatagcaattctcaaa 151  Q
    ||| ||||||||||||||||    
T  39601654 tgggaatagcaattctcaaa 39601635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 5 - 71
Target Start/End: Complemental strand, 22547549 - 22547483
Alignment:
Q  5 gagagcttctgccaaatttgtagcagaagatcctcggcagttaactgcagccggatttctaaaactt 71  Q
    |||||||||||||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||    
T  22547549 gagagcttctgccagatttgtagtagaagatcctcggtagttaactgcagccggatttctaaaactt 22547483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 5 - 50
Target Start/End: Complemental strand, 26451586 - 26451541
Alignment:
Q  5 gagagcttctgccaaatttgtagcagaagatcctcggcagttaact 50  Q
    |||||||||||||| |||||||||||||||||||||||||||||||    
T  26451586 gagagcttctgccagatttgtagcagaagatcctcggcagttaact 26451541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 53
Target Start/End: Complemental strand, 3395972 - 3395924
Alignment:
Q  5 gagagcttctgccaaatttgtagcagaagatcctcggcagttaactgca 53  Q
    ||||| |||||||| ||||||||||||||||||||||||||||||||||    
T  3395972 gagagtttctgccatatttgtagcagaagatcctcggcagttaactgca 3395924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 35 - 148
Target Start/End: Complemental strand, 34366961 - 34366846
Alignment:
Q  35 tcctcggcagttaactgcagccggatttctaaaactt--gcatttaactgtcgagggggcaaaacgtcatttacttatgtggcagagccttatgcaacgt 132  Q
    ||||||| |||||||||||||||||||| ||||||||  ||| ||||||| |||||||  |||| ||| ||||||  ||||||| ||||||||| || ||    
T  34366961 tcctcggaagttaactgcagccggatttataaaacttcggcagttaactgacgaggggcaaaaaggtcttttactcgtgtggcacagccttatgtaatgt 34366862  T
Q  133 ggaaatagcaattctc 148  Q
    || || | ||||||||    
T  34366861 gggaacatcaattctc 34366846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 35 - 107
Target Start/End: Original strand, 39939238 - 39939313
Alignment:
Q  35 tcctcggcagttaactgcagccggatttctaaaactt--gcatttaactgtcgagggggc-aaaacgtcatttact 107  Q
    |||| ||||||||||||||||||||||||||||||||   || |||||||||||||| || |||||||||||||||    
T  39939238 tccttggcagttaactgcagccggatttctaaaacttcgacaattaactgtcgagggagcaaaaacgtcatttact 39939313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 5 - 52
Target Start/End: Original strand, 18441408 - 18441455
Alignment:
Q  5 gagagcttctgccaaatttgtagcagaagatcctcggcagttaactgc 52  Q
    ||||| |||||||| |||||||||||||||||||||||||||||||||    
T  18441408 gagagtttctgccagatttgtagcagaagatcctcggcagttaactgc 18441455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 35 - 90
Target Start/End: Original strand, 38604271 - 38604328
Alignment:
Q  35 tcctcggcagttaactgcagccggatttctaaaactt--gcatttaactgtcgagggg 90  Q
    ||||||||||||||||||||||| |||||||||||||  ||| |||||||||||||||    
T  38604271 tcctcggcagttaactgcagccgtatttctaaaacttcggcagttaactgtcgagggg 38604328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 50
Target Start/End: Original strand, 41858090 - 41858135
Alignment:
Q  5 gagagcttctgccaaatttgtagcagaagatcctcggcagttaact 50  Q
    |||||||||||||| ||||||||||||||||||||| |||||||||    
T  41858090 gagagcttctgccagatttgtagcagaagatcctcgacagttaact 41858135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 35 - 71
Target Start/End: Original strand, 22550888 - 22550924
Alignment:
Q  35 tcctcggcagttaactgcagccggatttctaaaactt 71  Q
    |||||||||||||||||||||||||||||||||||||    
T  22550888 tcctcggcagttaactgcagccggatttctaaaactt 22550924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 5 - 53
Target Start/End: Complemental strand, 38871879 - 38871831
Alignment:
Q  5 gagagcttctgccaaatttgtagcagaagatcctcggcagttaactgca 53  Q
    ||||||| |||||| ||||||||||||||||||| ||||||||||||||    
T  38871879 gagagctcctgccagatttgtagcagaagatccttggcagttaactgca 38871831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 56
Target Start/End: Complemental strand, 37779758 - 37779707
Alignment:
Q  5 gagagcttctgccaaatttgtagcagaagatcctcggcagttaactgcagcc 56  Q
    ||||||||||| || ||||||||||||| ||||||| |||||||||||||||    
T  37779758 gagagcttctgtcagatttgtagcagaatatcctcgacagttaactgcagcc 37779707  T

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Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 35 - 90
Target Start/End: Complemental strand, 44933909 - 44933852
Alignment:
Q  35 tcctcggcagttaactgcagccggatttctaaaactt--gcatttaactgtcgagggg 90  Q
    ||||||||||||||||||||||| |||||||||||||  ||| ||||||| |||||||    
T  44933909 tcctcggcagttaactgcagccgtatttctaaaacttcggcagttaactgccgagggg 44933852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 76 - 148
Target Start/End: Complemental strand, 7577123 - 7577050
Alignment:
Q  76 ttaactgtcg-agggggcaaaacgtcatttacttatgtggcagagccttatgcaacgtggaaatagcaattctc 148  Q
    |||||||||| |||||  ||||||||||||||| |||||||| ||||||||| || |||| || ||||||||||    
T  7577123 ttaactgtcgcaggggtaaaaacgtcatttactcatgtggcacagccttatgtaatgtgggaacagcaattctc 7577050  T

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Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 71
Target Start/End: Original strand, 2335171 - 2335207
Alignment:
Q  35 tcctcggcagttaactgcagccggatttctaaaactt 71  Q
    ||||||||||||||||||||||| |||||||||||||    
T  2335171 tcctcggcagttaactgcagccgtatttctaaaactt 2335207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 71
Target Start/End: Original strand, 5533048 - 5533084
Alignment:
Q  35 tcctcggcagttaactgcagccggatttctaaaactt 71  Q
    ||||||||||||||||||||||| |||||||||||||    
T  5533048 tcctcggcagttaactgcagccgtatttctaaaactt 5533084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 71
Target Start/End: Complemental strand, 27501650 - 27501614
Alignment:
Q  35 tcctcggcagttaactgcagccggatttctaaaactt 71  Q
    ||||||||||||||||||||||| |||||||||||||    
T  27501650 tcctcggcagttaactgcagccgtatttctaaaactt 27501614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 71
Target Start/End: Complemental strand, 28617618 - 28617582
Alignment:
Q  35 tcctcggcagttaactgcagccggatttctaaaactt 71  Q
    ||||||||||||||||||||||| |||||||||||||    
T  28617618 tcctcggcagttaactgcagccgtatttctaaaactt 28617582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 71
Target Start/End: Complemental strand, 32584102 - 32584066
Alignment:
Q  35 tcctcggcagttaactgcagccggatttctaaaactt 71  Q
    ||||||||||||||||||||||| |||||||||||||    
T  32584102 tcctcggcagttaactgcagccgtatttctaaaactt 32584066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 148
Target Start/End: Original strand, 41250095 - 41250210
Alignment:
Q  35 tcctcggcagttaactgcagccggatttctaaaactt--gcatttaactgtcgagggggcaaaacgtcatttacttatgtggcagagccttatgcaacgt 132  Q
    ||||||||||| |||||||| ||||||||||||||||   || ||||||  |||||||  ||||||||| |||||  |||| || | |||||||||| ||    
T  41250095 tcctcggcagtaaactgcagtcggatttctaaaacttcgacagttaactaccgaggggcaaaaacgtcaattactcgtgtgccacaaccttatgcaatgt 41250194  T
Q  133 ggaaatagcaattctc 148  Q
    || || | ||||||||    
T  41250195 gggaacaacaattctc 41250210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 90
Target Start/End: Complemental strand, 41016464 - 41016407
Alignment:
Q  35 tcctcggcagttaactgcagccggatttctaaaactt--gcatttaactgtcgagggg 90  Q
    ||||||||||||||||||||  |||||||||||||||  | | |||||||||||||||    
T  41016464 tcctcggcagttaactgcagttggatttctaaaacttcggtagttaactgtcgagggg 41016407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 93 - 150
Target Start/End: Complemental strand, 27704050 - 27703993
Alignment:
Q  93 aaaacgtcatttacttatgtggcagagccttatgcaacgtggaaatagcaattctcaa 150  Q
    ||||||||||||| || ||||||| ||||||||| || |||| || ||||||||||||    
T  27704050 aaaacgtcatttatttgtgtggcacagccttatgtaatgtgggaacagcaattctcaa 27703993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 50
Target Start/End: Complemental strand, 41274698 - 41274653
Alignment:
Q  5 gagagcttctgccaaatttgtagcagaagatcctcggcagttaact 50  Q
    |||||||||||||| |||| ||| ||||||| ||||||||||||||    
T  41274698 gagagcttctgccagatttatagtagaagattctcggcagttaact 41274653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 63
Target Start/End: Complemental strand, 39533 - 39505
Alignment:
Q  35 tcctcggcagttaactgcagccggatttc 63  Q
    |||||||||||||||||||||||||||||    
T  39533 tcctcggcagttaactgcagccggatttc 39505  T

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Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 63
Target Start/End: Complemental strand, 1114793 - 1114765
Alignment:
Q  35 tcctcggcagttaactgcagccggatttc 63  Q
    |||||||||||||||||||||||||||||    
T  1114793 tcctcggcagttaactgcagccggatttc 1114765  T

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Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 24860488 - 24860448
Alignment:
Q  5 gagagcttctgccaaatttgtagcagaagatcctcggcagt 45  Q
    ||||||||||| ||||||| ||||||||||||||| |||||    
T  24860488 gagagcttctgtcaaatttatagcagaagatcctccgcagt 24860448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 71
Target Start/End: Original strand, 43363283 - 43363319
Alignment:
Q  35 tcctcggcagttaactgcagccggatttctaaaactt 71  Q
    ||||||| ||||||||||||||| |||||||||||||    
T  43363283 tcctcggtagttaactgcagccgtatttctaaaactt 43363319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 4e-28; HSPs: 35)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 5 - 148
Target Start/End: Complemental strand, 44596941 - 44596795
Alignment:
Q  5 gagagcttctgccaaatttgtagcagaagatcctcggcagttaactgcagccggatttctaaaactt--gcatttaactgtcgagggggc-aaaacgtca 101  Q
    ||||| ||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||  ||| ||||||| |||| |||| |||||||||    
T  44596941 gagagtttctgccaaatttgtagcagaagatactcagcagttaactgcaaccggatttctaaaacttcggcagttaactgccgagcgggcaaaaacgtca 44596842  T
Q  102 tttacttatgtggcagagccttatgcaacgtggaaatagcaattctc 148  Q
    ||||||  ||||||| || |||||| || |||| || | ||||||||    
T  44596841 tttactcgtgtggcacagtcttatgtaatgtgggaacaacaattctc 44596795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 11 - 148
Target Start/End: Complemental strand, 49426787 - 49426648
Alignment:
Q  11 ttctgccaaatttgtagcagaagatcctcggcagttaactgcagccggatttctaaaactt--gcatttaactgtcgagggggcaaaacgtcatttactt 108  Q
    |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||  ||  ||||||| ||| |||  || ||||||||||||     
T  49426787 ttctgccagatttgtagcagaagatcctcggcagttaattgcagccggatttctaaaacttcggcggttaactgccgaagggaaaacacgtcatttactc 49426688  T
Q  109 atgtggcagagccttatgcaacgtggaaatagcaattctc 148  Q
     ||||| | ||||||||  || ||| ||| ||||||||||    
T  49426687 gtgtggtacagccttatcaaatgtgtaaacagcaattctc 49426648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 5 - 59
Target Start/End: Original strand, 27487633 - 27487687
Alignment:
Q  5 gagagcttctgccaaatttgtagcagaagatcctcggcagttaactgcagccgga 59  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  27487633 gagagcttctgccagatttgtagcagaagatcctcggcagttaactgcagccgga 27487687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 35 - 157
Target Start/End: Original strand, 51271614 - 51271739
Alignment:
Q  35 tcctcggcagttaactgcagccggatttctaaaactt--gcatttaactgtcgagggggc-aaaacgtcatttacttatgtggcagagccttatgcaacg 131  Q
    ||||||||| |||||||||||||||||||||||||||  ||| ||||||| ||||||||| ||||||||||||||   ||||||| | ||||||| ||      
T  51271614 tcctcggcaattaactgcagccggatttctaaaacttcggcagttaactgccgagggggcaaaaacgtcatttacccgtgtggcacaaccttatgtaatt 51271713  T
Q  132 tggaaatagcaattctcaaaatgaaa 157  Q
    ||| || | ||||||||||| |||||    
T  51271714 tgggaacaacaattctcaaattgaaa 51271739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 35 - 125
Target Start/End: Complemental strand, 94459 - 94367
Alignment:
Q  35 tcctcggcagttaactgcagccggatttctaaaactt--gcatttaactgtcgagggggcaaaacgtcatttacttatgtggcagagccttat 125  Q
    ||||||| ||||||||||||| |||||||||||||||  ||| ||||||| ||| |||  ||||||||||||||| |||||||| ||||||||    
T  94459 tcctcggtagttaactgcagctggatttctaaaacttcggcagttaactgccgaagggcaaaaacgtcatttactcatgtggcacagccttat 94367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 14174878 - 14174930
Alignment:
Q  5 gagagcttctgccaaatttgtagcagaagatcctcggcagttaactgcagccg 57  Q
    |||||||||||||| |||| |||||||||||||||||||||||||||||||||    
T  14174878 gagagcttctgccagatttttagcagaagatcctcggcagttaactgcagccg 14174930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 35 - 149
Target Start/End: Original strand, 29765552 - 29765669
Alignment:
Q  35 tcctcggcagttaactgcagccggatttctaaaactt--gcatttaactgtcgagggggc-aaaacgtcatttacttatgtggcagagccttatgcaacg 131  Q
    ||||||||||||||||||| |||||||||||||||||  ||| ||||||| ||||||| | ||||||||||||| |  ||||| | | |||||||||| |    
T  29765552 tcctcggcagttaactgcaaccggatttctaaaacttcggcagttaactgccgaggggacaaaaacgtcatttattcgtgtggtacaaccttatgcaatg 29765651  T
Q  132 tggaaatagcaattctca 149  Q
    ||| || | |||||||||    
T  29765652 tgggaacaacaattctca 29765669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 5 - 50
Target Start/End: Original strand, 29763186 - 29763231
Alignment:
Q  5 gagagcttctgccaaatttgtagcagaagatcctcggcagttaact 50  Q
    |||||||||||||| |||||||||||||||||||||||||||||||    
T  29763186 gagagcttctgccagatttgtagcagaagatcctcggcagttaact 29763231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 5 - 50
Target Start/End: Original strand, 42572724 - 42572769
Alignment:
Q  5 gagagcttctgccaaatttgtagcagaagatcctcggcagttaact 50  Q
    |||||||||||||| |||||||||||||||||||||||||||||||    
T  42572724 gagagcttctgccagatttgtagcagaagatcctcggcagttaact 42572769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 5 - 50
Target Start/End: Complemental strand, 49395709 - 49395664
Alignment:
Q  5 gagagcttctgccaaatttgtagcagaagatcctcggcagttaact 50  Q
    |||||||||||||| |||||||||||||||||||||||||||||||    
T  49395709 gagagcttctgccagatttgtagcagaagatcctcggcagttaact 49395664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 35 - 107
Target Start/End: Original strand, 46886410 - 46886485
Alignment:
Q  35 tcctcggcagttaactgcagccggatttctaaaactt--gcatttaactgtcgagggggc-aaaacgtcatttact 107  Q
    ||||||||| |||||| ||||||||||||||||||||  ||| ||||||| ||||||||| |||||||||||||||    
T  46886410 tcctcggcacttaactacagccggatttctaaaacttcggcagttaactgccgagggggcaaaaacgtcatttact 46886485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 50
Target Start/End: Original strand, 49927468 - 49927513
Alignment:
Q  5 gagagcttctgccaaatttgtagcagaagatcctcggcagttaact 50  Q
    |||||||||||||| |||||||||||||||||||||| ||||||||    
T  49927468 gagagcttctgccagatttgtagcagaagatcctcggtagttaact 49927513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 35 - 71
Target Start/End: Complemental strand, 19161942 - 19161906
Alignment:
Q  35 tcctcggcagttaactgcagccggatttctaaaactt 71  Q
    |||||||||||||||||||||||||||||||||||||    
T  19161942 tcctcggcagttaactgcagccggatttctaaaactt 19161906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 35 - 90
Target Start/End: Complemental strand, 4883283 - 4883226
Alignment:
Q  35 tcctcggcagttaactgcagccggatttctaaaactt--gcatttaactgtcgagggg 90  Q
    ||||||||||||||||||||||| |||||||||||||  ||| |||||||| ||||||    
T  4883283 tcctcggcagttaactgcagccgtatttctaaaacttcggcagttaactgttgagggg 4883226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 42
Target Start/End: Complemental strand, 13972168 - 13972131
Alignment:
Q  5 gagagcttctgccaaatttgtagcagaagatcctcggc 42  Q
    |||||||||||||| |||||||||||||||||||||||    
T  13972168 gagagcttctgccagatttgtagcagaagatcctcggc 13972131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 51269044 - 51269003
Alignment:
Q  5 gagagcttctgccaaatttgtagcagaagatcctcggcagtt 46  Q
    |||||||||||| |||||||||||||||||||||||| ||||    
T  51269044 gagagcttctgctaaatttgtagcagaagatcctcggtagtt 51269003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 71
Target Start/End: Original strand, 586628 - 586664
Alignment:
Q  35 tcctcggcagttaactgcagccggatttctaaaactt 71  Q
    ||||||||||||||||||||||| |||||||||||||    
T  586628 tcctcggcagttaactgcagccgtatttctaaaactt 586664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 71
Target Start/End: Complemental strand, 19914516 - 19914480
Alignment:
Q  35 tcctcggcagttaactgcagccggatttctaaaactt 71  Q
    ||||||||||||||||||||||| |||||||||||||    
T  19914516 tcctcggcagttaactgcagccgtatttctaaaactt 19914480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 41
Target Start/End: Original strand, 26637223 - 26637259
Alignment:
Q  5 gagagcttctgccaaatttgtagcagaagatcctcgg 41  Q
    |||||||||||||| ||||||||||||||||||||||    
T  26637223 gagagcttctgccagatttgtagcagaagatcctcgg 26637259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 71
Target Start/End: Complemental strand, 30194471 - 30194435
Alignment:
Q  35 tcctcggcagttaactgcagccggatttctaaaactt 71  Q
    ||||||||||||||||||||||| |||||||||||||    
T  30194471 tcctcggcagttaactgcagccgtatttctaaaactt 30194435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 71
Target Start/End: Original strand, 49661756 - 49661792
Alignment:
Q  35 tcctcggcagttaactgcagccggatttctaaaactt 71  Q
    ||||||||||||||||||||||| |||||||||||||    
T  49661756 tcctcggcagttaactgcagccgtatttctaaaactt 49661792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 35 - 66
Target Start/End: Complemental strand, 9710628 - 9710597
Alignment:
Q  35 tcctcggcagttaactgcagccggatttctaa 66  Q
    ||||||||||||||||||||||||||||||||    
T  9710628 tcctcggcagttaactgcagccggatttctaa 9710597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 90
Target Start/End: Original strand, 2425708 - 2425765
Alignment:
Q  35 tcctcggcagttaactgcagccggatttctaaaactt--gcatttaactgtcgagggg 90  Q
    ||||| ||||||||||||||||||||||| |||||||  ||| ||||||| |||||||    
T  2425708 tcctcagcagttaactgcagccggatttccaaaacttcggcagttaactgccgagggg 2425765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 9 - 50
Target Start/End: Complemental strand, 6434850 - 6434809
Alignment:
Q  9 gcttctgccaaatttgtagcagaagatcctcggcagttaact 50  Q
    |||||| ||| ||||||||||||||||||| |||||||||||    
T  6434850 gcttctaccagatttgtagcagaagatccttggcagttaact 6434809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 68
Target Start/End: Original strand, 44598929 - 44598962
Alignment:
Q  35 tcctcggcagttaactgcagccggatttctaaaa 68  Q
    ||||||||||||||||||||||||||| ||||||    
T  44598929 tcctcggcagttaactgcagccggattactaaaa 44598962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 38 - 71
Target Start/End: Original strand, 48228328 - 48228361
Alignment:
Q  38 tcggcagttaactgcagccggatttctaaaactt 71  Q
    ||||||||||||||||||| ||||||||||||||    
T  48228328 tcggcagttaactgcagccagatttctaaaactt 48228361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 63
Target Start/End: Original strand, 6562184 - 6562212
Alignment:
Q  35 tcctcggcagttaactgcagccggatttc 63  Q
    |||||||||||||||||||||||||||||    
T  6562184 tcctcggcagttaactgcagccggatttc 6562212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 63
Target Start/End: Complemental strand, 15047332 - 15047304
Alignment:
Q  35 tcctcggcagttaactgcagccggatttc 63  Q
    |||||||||||||||||||||||||||||    
T  15047332 tcctcggcagttaactgcagccggatttc 15047304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 63
Target Start/End: Complemental strand, 20349507 - 20349479
Alignment:
Q  35 tcctcggcagttaactgcagccggatttc 63  Q
    |||||||||||||||||||||||||||||    
T  20349507 tcctcggcagttaactgcagccggatttc 20349479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 63
Target Start/End: Original strand, 30910026 - 30910054
Alignment:
Q  35 tcctcggcagttaactgcagccggatttc 63  Q
    |||||||||||||||||||||||||||||    
T  30910026 tcctcggcagttaactgcagccggatttc 30910054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 41
Target Start/End: Complemental strand, 36908676 - 36908640
Alignment:
Q  5 gagagcttctgccaaatttgtagcagaagatcctcgg 41  Q
    |||||||||||||| |||||||||||||| |||||||    
T  36908676 gagagcttctgccagatttgtagcagaagctcctcgg 36908640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 63
Target Start/End: Complemental strand, 41453888 - 41453860
Alignment:
Q  35 tcctcggcagttaactgcagccggatttc 63  Q
    |||||||||||||||||||||||||||||    
T  41453888 tcctcggcagttaactgcagccggatttc 41453860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 63
Target Start/End: Original strand, 44470034 - 44470062
Alignment:
Q  35 tcctcggcagttaactgcagccggatttc 63  Q
    |||||||||||||||||||||||||||||    
T  44470034 tcctcggcagttaactgcagccggatttc 44470062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 71
Target Start/End: Original strand, 49429158 - 49429194
Alignment:
Q  35 tcctcggcagttaactgcagccggatttctaaaactt 71  Q
    |||||||||  ||||||||||||||||||||||||||    
T  49429158 tcctcggcaactaactgcagccggatttctaaaactt 49429194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 63
Target Start/End: Complemental strand, 52802180 - 52802152
Alignment:
Q  35 tcctcggcagttaactgcagccggatttc 63  Q
    |||||||||||||||||||||||||||||    
T  52802180 tcctcggcagttaactgcagccggatttc 52802152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 41)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 5 - 71
Target Start/End: Original strand, 34530762 - 34530828
Alignment:
Q  5 gagagcttctgccaaatttgtagcagaagatcctcggcagttaactgcagccggatttctaaaactt 71  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  34530762 gagagcttctgccaaatttgtagcagaagatcctcggcagttaactgcagccagatttctaaaactt 34530828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 35 - 151
Target Start/End: Original strand, 16984184 - 16984303
Alignment:
Q  35 tcctcggcagttaactgcagccggatttctaaaactt--gcatttaactgtcgaggggg-caaaacgtcatttacttatgtggcagagccttatgcaacg 131  Q
    |||||||||||||||||||||||||||||||||||||  ||| ||||||| ||||||||  |||||||||||||||  ||||||| ||||||||  || |    
T  16984184 tcctcggcagttaactgcagccggatttctaaaacttcggcagttaactgccgagggggtaaaaacgtcatttactcgtgtggcacagccttatcaaatg 16984283  T
Q  132 tggaaatagcaattctcaaa 151  Q
    || ||| |||||||||||||    
T  16984284 tgtaaacagcaattctcaaa 16984303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 5 - 129
Target Start/End: Complemental strand, 39588172 - 39588045
Alignment:
Q  5 gagagcttctgccaaatttgtagcagaagatcctcggcagttaactgcagccggatttctaaaactt--gcatttaactgtcgagggggc-aaaacgtca 101  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||  | |  ||| ||||||| ||||||||| |||||||||    
T  39588172 gagagcttctgccatatttgtagcagaagatcctcggcagttaactgcagtcgaatttctaattcctcggcagttaactgccgagggggcaaaaacgtca 39588073  T
Q  102 tttacttatgtggcagagccttatgcaa 129  Q
    ||||||  |||| || | ||||||||||    
T  39588072 tttactcgtgtgacacatccttatgcaa 39588045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 35 - 151
Target Start/End: Original strand, 39590591 - 39590710
Alignment:
Q  35 tcctcggcagttaactgcagccggatttctaaaactt--gcatttaactgtcgagggggc-aaaacgtcatttacttatgtggcagagccttatgcaacg 131  Q
    ||||||||||||||||||||| | |||||||||||||  ||| ||||||| ||||||||| ||||| |||||||||  ||||||| ||||||||  || |    
T  39590591 tcctcggcagttaactgcagctgtatttctaaaacttcggcagttaactgccgagggggcaaaaacatcatttactcgtgtggcacagccttatataatg 39590690  T
Q  132 tggaaatagcaattctcaaa 151  Q
    |||||| |||||||||||||    
T  39590691 tggaaacagcaattctcaaa 39590710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 5 - 58
Target Start/End: Original strand, 34154395 - 34154448
Alignment:
Q  5 gagagcttctgccaaatttgtagcagaagatcctcggcagttaactgcagccgg 58  Q
    |||||||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  34154395 gagagcttctgccagatttgtagcagaagatcctctgcagttaactgcagccgg 34154448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 37 - 125
Target Start/End: Complemental strand, 16983570 - 16983479
Alignment:
Q  37 ctcggcagttaactgcagccggatttctaaaactt--gcatttaactgtcgaggggg-caaaacgtcatttacttatgtggcagagccttat 125  Q
    ||||||||||||||| |||||||||||||||||||  ||| ||||||| ||||||||  |||||||||||||||  ||||||| ||||||||    
T  16983570 ctcggcagttaactgtagccggatttctaaaacttcggcagttaactgccgagggggtaaaaacgtcatttactcgtgtggcacagccttat 16983479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 35 - 154
Target Start/End: Complemental strand, 28081508 - 28081387
Alignment:
Q  35 tcctcggcagttaactgcagccggatttctaaaactt--gcatttaactgtcgagggggcaaaacgtcatttacttatgtggcagagccttatgcaacgt 132  Q
    |||||||||||||||||||| ||||||||||||||||  ||| ||||||| ||| |||  |||||| ||||||||  ||||| | ||||||||  || ||    
T  28081508 tcctcggcagttaactgcagtcggatttctaaaacttcggcagttaactgccgaagggcaaaaacgccatttactcgtgtggtacagccttatcaaatgt 28081409  T
Q  133 ggaaatagcaattctcaaaatg 154  Q
    | ||| || |||||||||||||    
T  28081408 gtaaacagtaattctcaaaatg 28081387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 5 - 58
Target Start/End: Original strand, 6283434 - 6283487
Alignment:
Q  5 gagagcttctgccaaatttgtagcagaagatcctcggcagttaactgcagccgg 58  Q
    ||||||||| |||| ||||| |||||||||||||||||||||||||||||||||    
T  6283434 gagagcttcggccagatttgaagcagaagatcctcggcagttaactgcagccgg 6283487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 5 - 58
Target Start/End: Original strand, 51429296 - 51429349
Alignment:
Q  5 gagagcttctgccaaatttgtagcagaagatcctcggcagttaactgcagccgg 58  Q
    |||||||||| ||| ||||||||||||||||||||| |||||||||||||||||    
T  51429296 gagagcttcttccagatttgtagcagaagatcctcgacagttaactgcagccgg 51429349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 5 - 50
Target Start/End: Complemental strand, 56138358 - 56138313
Alignment:
Q  5 gagagcttctgccaaatttgtagcagaagatcctcggcagttaact 50  Q
    |||||||||||||| |||||||||||||||||||||||||||||||    
T  56138358 gagagcttctgccagatttgtagcagaagatcctcggcagttaact 56138313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 5 - 62
Target Start/End: Complemental strand, 56304956 - 56304899
Alignment:
Q  5 gagagcttctgccaaatttgtagcagaagatcctcggcagttaactgcagccggattt 62  Q
    |||||||||||||| ||||||||||||| |||||||||| |||||||||||| |||||    
T  56304956 gagagcttctgccagatttgtagcagaaaatcctcggcaattaactgcagccagattt 56304899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 35 - 148
Target Start/End: Complemental strand, 44674214 - 44674099
Alignment:
Q  35 tcctcggcagttaactgcagccggatttctaaaactt--gcatttaactgtcgagggggcaaaacgtcatttacttatgtggcagagccttatgcaacgt 132  Q
    |||||||||||||||||||||||| ||||| ||||||  ||| ||||||| | |||||  |||||||||||||||  ||||||| | ||||||| || ||    
T  44674214 tcctcggcagttaactgcagccgggtttcttaaacttcggcagttaactgccaaggggcaaaaacgtcatttactcgtgtggcacaaccttatgtaatgt 44674115  T
Q  133 ggaaatagcaattctc 148  Q
    || || | ||||||||    
T  44674114 gggaacaacaattctc 44674099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 50
Target Start/End: Original strand, 958561 - 958606
Alignment:
Q  5 gagagcttctgccaaatttgtagcagaagatcctcggcagttaact 50  Q
    |||||||||||||  |||||||||||||||||||||||||||||||    
T  958561 gagagcttctgccggatttgtagcagaagatcctcggcagttaact 958606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 50
Target Start/End: Original strand, 44561297 - 44561342
Alignment:
Q  5 gagagcttctgccaaatttgtagcagaagatcctcggcagttaact 50  Q
    |||||||||||||| |||||||||||| ||||||||||||||||||    
T  44561297 gagagcttctgccagatttgtagcagacgatcctcggcagttaact 44561342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 52
Target Start/End: Original strand, 243312 - 243359
Alignment:
Q  5 gagagcttctgccaaatttgtagcagaagatcctcggcagttaactgc 52  Q
    |||||||||||||| ||||||| ||||||||||||| |||||||||||    
T  243312 gagagcttctgccagatttgtaacagaagatcctcgacagttaactgc 243359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 35 - 90
Target Start/End: Original strand, 21022911 - 21022968
Alignment:
Q  35 tcctcggcagttaactgcagccggatttctaaaactt--gcatttaactgtcgagggg 90  Q
    ||||||||||||||||||||||| |||||||||||||  ||| ||||||| |||||||    
T  21022911 tcctcggcagttaactgcagccgtatttctaaaacttcggcagttaactgccgagggg 21022968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 35 - 90
Target Start/End: Original strand, 40833633 - 40833690
Alignment:
Q  35 tcctcggcagttaactgcagccggatttctaaaactt--gcatttaactgtcgagggg 90  Q
    ||||||||||||||||||||||| |||||||||||||  ||| ||||||| |||||||    
T  40833633 tcctcggcagttaactgcagccgtatttctaaaacttcggcagttaactgccgagggg 40833690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 50
Target Start/End: Complemental strand, 1042041 - 1041996
Alignment:
Q  5 gagagcttctgccaaatttgtagcagaagatcctcggcagttaact 50  Q
    |||||||| ||||| |||||||| ||||||||||||||||||||||    
T  1042041 gagagcttatgccagatttgtagtagaagatcctcggcagttaact 1041996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 34 - 71
Target Start/End: Original strand, 28084012 - 28084049
Alignment:
Q  34 atcctcggcagttaactgcagccggatttctaaaactt 71  Q
    |||||||||||||||||||||| |||||||||||||||    
T  28084012 atcctcggcagttaactgcagctggatttctaaaactt 28084049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 50
Target Start/End: Original strand, 29700269 - 29700314
Alignment:
Q  5 gagagcttctgccaaatttgtagcagaagatcctcggcagttaact 50  Q
    |||||||||||||| ||||||||||||||||| |||||| ||||||    
T  29700269 gagagcttctgccagatttgtagcagaagatcatcggcaattaact 29700314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 4786301 - 4786345
Alignment:
Q  5 gagagcttctgccaaatttgtagcagaagatcctcggcagttaac 49  Q
    |||||||||| ||| ||||||||||||||||| ||||||||||||    
T  4786301 gagagcttctaccagatttgtagcagaagatcatcggcagttaac 4786345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 71
Target Start/End: Complemental strand, 14200611 - 14200575
Alignment:
Q  35 tcctcggcagttaactgcagccggatttctaaaactt 71  Q
    ||||||||||||||||||||||| |||||||||||||    
T  14200611 tcctcggcagttaactgcagccgtatttctaaaactt 14200575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 53
Target Start/End: Complemental strand, 37865232 - 37865200
Alignment:
Q  21 tttgtagcagaagatcctcggcagttaactgca 53  Q
    |||||||||||||||||||||||||||||||||    
T  37865232 tttgtagcagaagatcctcggcagttaactgca 37865200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 71
Target Start/End: Original strand, 38369205 - 38369241
Alignment:
Q  35 tcctcggcagttaactgcagccggatttctaaaactt 71  Q
    ||||||||||||||||||||||| |||||||||||||    
T  38369205 tcctcggcagttaactgcagccgtatttctaaaactt 38369241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 71
Target Start/End: Original strand, 46254471 - 46254507
Alignment:
Q  35 tcctcggcagttaactgcagccggatttctaaaactt 71  Q
    ||||||||||||||||||||||| |||||||||||||    
T  46254471 tcctcggcagttaactgcagccgtatttctaaaactt 46254507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 96
Target Start/End: Complemental strand, 50274810 - 50274747
Alignment:
Q  35 tcctcggcagttaactgcagccggatttctaaaactt--gcatttaactgtcgagggggcaaaa 96  Q
    ||||||||||||||||||||||||||||||||  | |  ||| ||||||| |||||||||||||    
T  50274810 tcctcggcagttaactgcagccggatttctaattcctcggcagttaactgccgagggggcaaaa 50274747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 71
Target Start/End: Complemental strand, 51492121 - 51492085
Alignment:
Q  35 tcctcggcagttaactgcagccggatttctaaaactt 71  Q
    |||| ||||||||||||||||||||||||||||||||    
T  51492121 tcctaggcagttaactgcagccggatttctaaaactt 51492085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 35 - 66
Target Start/End: Original strand, 50278821 - 50278852
Alignment:
Q  35 tcctcggcagttaactgcagccggatttctaa 66  Q
    ||||||||||||||||||||||||||||||||    
T  50278821 tcctcggcagttaactgcagccggatttctaa 50278852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 52
Target Start/End: Complemental strand, 42885557 - 42885508
Alignment:
Q  5 gagagcttctgccaaattt--gtagcagaagatcctcggcagttaactgc 52  Q
    |||||||||||||| ||||  ||||||||||||| |||||||||||||||    
T  42885557 gagagcttctgccagatttttgtagcagaagatcatcggcagttaactgc 42885508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 118
Target Start/End: Original strand, 49892418 - 49892483
Alignment:
Q  55 ccggatttctaaaacttg--catttaactgtcgagggggcaaaacgtcatttacttatgtggcaga 118  Q
    |||||||||||||||||   ||||||||||||||||||  ||||||||| |||||  |||||||||    
T  49892418 ccggatttctaaaacttcaacatttaactgtcgaggggcaaaaacgtcaattactcgtgtggcaga 49892483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 38 - 71
Target Start/End: Complemental strand, 23220725 - 23220692
Alignment:
Q  38 tcggcagttaactgcagccggatttctaaaactt 71  Q
    |||||||||||||||||||| |||||||||||||    
T  23220725 tcggcagttaactgcagccgtatttctaaaactt 23220692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 89
Target Start/End: Original strand, 51037491 - 51037547
Alignment:
Q  35 tcctcggcagttaactgcagccggatttctaaaactt--gcatttaactgtcgaggg 89  Q
    |||||||||||||| |||||||| |||||||||||||  ||| ||||||| ||||||    
T  51037491 tcctcggcagttaattgcagccgtatttctaaaacttcggcagttaactgccgaggg 51037547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 63
Target Start/End: Complemental strand, 3403897 - 3403869
Alignment:
Q  35 tcctcggcagttaactgcagccggatttc 63  Q
    |||||||||||||||||||||||||||||    
T  3403897 tcctcggcagttaactgcagccggatttc 3403869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 71
Target Start/End: Original strand, 7485684 - 7485720
Alignment:
Q  35 tcctcggcagttaactgcagccggatttctaaaactt 71  Q
    |||||||||||||| |||||||| |||||||||||||    
T  7485684 tcctcggcagttaattgcagccgtatttctaaaactt 7485720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 63
Target Start/End: Complemental strand, 9890044 - 9890016
Alignment:
Q  35 tcctcggcagttaactgcagccggatttc 63  Q
    |||||||||||||||||||||||||||||    
T  9890044 tcctcggcagttaactgcagccggatttc 9890016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 63
Target Start/End: Complemental strand, 15995772 - 15995744
Alignment:
Q  35 tcctcggcagttaactgcagccggatttc 63  Q
    |||||||||||||||||||||||||||||    
T  15995772 tcctcggcagttaactgcagccggatttc 15995744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 63
Target Start/End: Complemental strand, 19069237 - 19069209
Alignment:
Q  35 tcctcggcagttaactgcagccggatttc 63  Q
    |||||||||||||||||||||||||||||    
T  19069237 tcctcggcagttaactgcagccggatttc 19069209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 63
Target Start/End: Original strand, 19073678 - 19073706
Alignment:
Q  35 tcctcggcagttaactgcagccggatttc 63  Q
    |||||||||||||||||||||||||||||    
T  19073678 tcctcggcagttaactgcagccggatttc 19073706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 62
Target Start/End: Original strand, 40354590 - 40354626
Alignment:
Q  26 agcagaagatcctcggcagttaactgcagccggattt 62  Q
    |||| ||||||||||||| ||||||||||||||||||    
T  40354590 agcataagatcctcggcaattaactgcagccggattt 40354626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 71
Target Start/End: Complemental strand, 49889733 - 49889697
Alignment:
Q  35 tcctcggcagttaactgcagccggatttctaaaactt 71  Q
    ||||||||||||||||||| || ||||||||||||||    
T  49889733 tcctcggcagttaactgcaaccagatttctaaaactt 49889697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 71
Target Start/End: Complemental strand, 51036553 - 51036517
Alignment:
Q  35 tcctcggcagttaactgcagccggatttctaaaactt 71  Q
    |||||||||||||||| |||||| |||||||||||||    
T  51036553 tcctcggcagttaactacagccgtatttctaaaactt 51036517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 7e-27; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 35 - 148
Target Start/End: Complemental strand, 7757375 - 7757259
Alignment:
Q  35 tcctcggcagttaactgcagccggatttctaaaactt--gcatttaactgtcgagggggc-aaaacgtcatttacttatgtggcagagccttatgcaacg 131  Q
    |||||||||||||||||||||||||||||||||||||  ||| ||||||||||||||||| |||||||||||||||  ||||||| || |||||| || |    
T  7757375 tcctcggcagttaactgcagccggatttctaaaacttcggcagttaactgtcgagggggcaaaaacgtcatttactcgtgtggcatagtcttatgtaatg 7757276  T
Q  132 tggaaatagcaattctc 148  Q
    ||| || ||||||||||    
T  7757275 tgggaacagcaattctc 7757259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 35 - 148
Target Start/End: Original strand, 43094599 - 43094715
Alignment:
Q  35 tcctcggcagttaactgcagccggatttctaaaactt--gcatttaactgtcga-gggggcaaaacgtcatttacttatgtggcagagccttatgcaacg 131  Q
    |||||||||||||||||||||||||||||||||||||  ||| ||||||||||| ||||  |||||||||||||||  ||||||| | ||||||  || |    
T  43094599 tcctcggcagttaactgcagccggatttctaaaacttcggcagttaactgtcgatggggtaaaaacgtcatttactcgtgtggcataaccttatcaaatg 43094698  T
Q  132 tggaaatagcaattctc 148  Q
    || ||| ||||||||||    
T  43094699 tgtaaacagcaattctc 43094715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 35 - 125
Target Start/End: Complemental strand, 11346057 - 11345965
Alignment:
Q  35 tcctcggcagttaactgcagccggatttctaaaactt--gcatttaactgtcgagggggcaaaacgtcatttacttatgtggcagagccttat 125  Q
    ||||||||||||||||||||| |||||||||||||||  ||| ||||||||| |  ||  |||||||||||||||| ||||||| ||||||||    
T  11346057 tcctcggcagttaactgcagctggatttctaaaacttcggcagttaactgtcaaaaggcaaaaacgtcatttacttgtgtggcacagccttat 11345965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 35 - 148
Target Start/End: Original strand, 7762267 - 7762382
Alignment:
Q  35 tcctcggcagttaactgcagccggatttctaaaactt--gcatttaactgtcgagggggcaaaacgtcatttacttatgtggcagagccttatgcaacgt 132  Q
    |||||| |||||||||||| ||| |||||||||||||  ||| ||||||| |||||||  ||||||||| |||||  ||||||| ||||||||| || ||    
T  7762267 tcctcgacagttaactgcaaccgaatttctaaaacttcggcagttaactgccgaggggcaaaaacgtcaattactcgtgtggcacagccttatgtaatgt 7762366  T
Q  133 ggaaatagcaattctc 148  Q
    || || ||||||||||    
T  7762367 gggaacagcaattctc 7762382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 5 - 58
Target Start/End: Original strand, 42865771 - 42865824
Alignment:
Q  5 gagagcttctgccaaatttgtagcagaagatcctcggcagttaactgcagccgg 58  Q
    |||||||||||||| |||||||||||||||||||||||| ||||||||| ||||    
T  42865771 gagagcttctgccagatttgtagcagaagatcctcggcaattaactgcaaccgg 42865824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 35 - 90
Target Start/End: Original strand, 8539539 - 8539596
Alignment:
Q  35 tcctcggcagttaactgcagccggatttctaaaactt--gcatttaactgtcgagggg 90  Q
    |||||||||||||||||||||||||||||||||||||  ||| ||||||| |||||||    
T  8539539 tcctcggcagttaactgcagccggatttctaaaacttcggcagttaactgccgagggg 8539596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 50
Target Start/End: Original strand, 542757 - 542802
Alignment:
Q  5 gagagcttctgccaaatttgtagcagaagatcctcggcagttaact 50  Q
    |||| ||||||||| |||||||||||||||||||||||||||||||    
T  542757 gagaacttctgccagatttgtagcagaagatcctcggcagttaact 542802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 50
Target Start/End: Complemental strand, 18307356 - 18307315
Alignment:
Q  9 gcttctgccaaatttgtagcagaagatcctcggcagttaact 50  Q
    |||||||||| |||||||||||||||||||||||||||||||    
T  18307356 gcttctgccagatttgtagcagaagatcctcggcagttaact 18307315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 50
Target Start/End: Complemental strand, 20192459 - 20192414
Alignment:
Q  5 gagagcttctgccaaatttgtagcagaagatcctcggcagttaact 50  Q
    |||||||||||||| |||||||||||||||||||||||| ||||||    
T  20192459 gagagcttctgccagatttgtagcagaagatcctcggcatttaact 20192414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 35 - 90
Target Start/End: Complemental strand, 3891533 - 3891476
Alignment:
Q  35 tcctcggcagttaactgcagccggatttctaaaactt--gcatttaactgtcgagggg 90  Q
    ||||||||||||||||||||||| |||||||||||||  ||| ||||||| |||||||    
T  3891533 tcctcggcagttaactgcagccgtatttctaaaacttcggcagttaactgccgagggg 3891476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 50
Target Start/End: Complemental strand, 25497617 - 25497572
Alignment:
Q  5 gagagcttctgccaaatttgtagcagaagatcctcggcagttaact 50  Q
    |||||||||||||  |||||||||||||||| ||||||||||||||    
T  25497617 gagagcttctgcctgatttgtagcagaagattctcggcagttaact 25497572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 50
Target Start/End: Complemental strand, 35564367 - 35564322
Alignment:
Q  5 gagagcttctgccaaatttgtagcagaagatcctcggcagttaact 50  Q
    |||||||| ||||| |||||||||||||||||||| ||||||||||    
T  35564367 gagagcttatgccagatttgtagcagaagatcctcagcagttaact 35564322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 40 - 125
Target Start/End: Complemental strand, 43094053 - 43093965
Alignment:
Q  40 ggcagttaactgcagccggatttctaaaactt--gcatttaactgtcg-agggggcaaaacgtcatttacttatgtggcagagccttat 125  Q
    ||||||||||||||||||||||||||||| ||  ||| |||||||| | |||||  |||||||||||||||  |||| || ||||||||    
T  43094053 ggcagttaactgcagccggatttctaaaatttcggcagttaactgttgaaggggtaaaaacgtcatttactcgtgtgacacagccttat 43093965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 71
Target Start/End: Original strand, 11348498 - 11348534
Alignment:
Q  35 tcctcggcagttaactgcagccggatttctaaaactt 71  Q
    ||||||||||||||||||| |||||||||||||||||    
T  11348498 tcctcggcagttaactgcatccggatttctaaaactt 11348534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 27 - 62
Target Start/End: Original strand, 8576959 - 8576994
Alignment:
Q  27 gcagaagatcctcggcagttaactgcagccggattt 62  Q
    |||||||||||| |||||||||||||||||||||||    
T  8576959 gcagaagatccttggcagttaactgcagccggattt 8576994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 50
Target Start/End: Complemental strand, 11346107 - 11346068
Alignment:
Q  11 ttctgccaaatttgtagcagaagatcctcggcagttaact 50  Q
    |||||||| ||||||||||||||||||||| |||||||||    
T  11346107 ttctgccagatttgtagcagaagatcctcgacagttaact 11346068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 35 - 66
Target Start/End: Original strand, 30887383 - 30887414
Alignment:
Q  35 tcctcggcagttaactgcagccggatttctaa 66  Q
    ||||||||||||||||||||||||||||||||    
T  30887383 tcctcggcagttaactgcagccggatttctaa 30887414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 38 - 96
Target Start/End: Original strand, 1397376 - 1397436
Alignment:
Q  38 tcggcagttaactgcagccggatttctaaaactt--gcatttaactgtcgagggggcaaaa 96  Q
    |||||||||||||||||||||||||||||  | |  ||| ||||||| |||||||||||||    
T  1397376 tcggcagttaactgcagccggatttctaattcctcagcagttaactgccgagggggcaaaa 1397436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 152
Target Start/End: Original strand, 13568098 - 13568218
Alignment:
Q  35 tcctcggcagttaactgcagccggatttctaaaactt--gcatttaactgtcga-gggggcaaaacgtcatttacttatgtggcagagccttatgcaacg 131  Q
    ||||||||||||||||||||||||||||| ||  | |  ||| ||||||  ||| ||||  |||||||||||||||  | ||||| ||||||||| || |    
T  13568098 tcctcggcagttaactgcagccggatttcaaattcctcggcagttaactaccgatggggtaaaaacgtcatttactcgtatggcacagccttatgtaatg 13568197  T
Q  132 tggaaatagcaattctcaaaa 152  Q
    ||| || | ||||||||||||    
T  13568198 tgggaacaacaattctcaaaa 13568218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 38 - 96
Target Start/End: Complemental strand, 41798865 - 41798805
Alignment:
Q  38 tcggcagttaactgcagccggatttctaaaactt--gcatttaactgtcgagggggcaaaa 96  Q
    |||||||||||||||||||||||||| ||  |||  ||| ||||||| |||||||||||||    
T  41798865 tcggcagttaactgcagccggatttcaaattcttcagcagttaactgccgagggggcaaaa 41798805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 71
Target Start/End: Original strand, 14686 - 14722
Alignment:
Q  35 tcctcggcagttaactgcagccggatttctaaaactt 71  Q
    |||||||||||||||| |||||| |||||||||||||    
T  14686 tcctcggcagttaactacagccgtatttctaaaactt 14722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 50
Target Start/End: Complemental strand, 3600438 - 3600398
Alignment:
Q  10 cttctgccaaatttgtagcagaagatcctcggcagttaact 50  Q
    |||||| || ||||||||||||||||||||||| |||||||    
T  3600438 cttctgtcagatttgtagcagaagatcctcggctgttaact 3600398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 63
Target Start/End: Original strand, 7021881 - 7021909
Alignment:
Q  35 tcctcggcagttaactgcagccggatttc 63  Q
    |||||||||||||||||||||||||||||    
T  7021881 tcctcggcagttaactgcagccggatttc 7021909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 63
Target Start/End: Complemental strand, 34122574 - 34122546
Alignment:
Q  35 tcctcggcagttaactgcagccggatttc 63  Q
    |||||||||||||||||||||||||||||    
T  34122574 tcctcggcagttaactgcagccggatttc 34122546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 63
Target Start/End: Original strand, 37820877 - 37820905
Alignment:
Q  35 tcctcggcagttaactgcagccggatttc 63  Q
    |||||||||||||||||||||||||||||    
T  37820877 tcctcggcagttaactgcagccggatttc 37820905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 5 - 66
Target Start/End: Complemental strand, 902 - 841
Alignment:
Q  5 gagagcttctgccaaatttgtagcagaagatcctcggcagttaactgcagccggatttctaa 66  Q
    |||||||||||||| ||||||||  |||||||||||||||||||||||||||||||||||||    
T  902 gagagcttctgccagatttgtagaggaagatcctcggcagttaactgcagccggatttctaa 841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 5 - 58
Target Start/End: Original strand, 21188393 - 21188446
Alignment:
Q  5 gagagcttctgccaaatttgtagcagaagatcctcggcagttaactgcagccgg 58  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  21188393 gagagcttctgccagatttgtagcagaagatcctcggcagttaactgcagccgg 21188446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 5 - 66
Target Start/End: Complemental strand, 34139977 - 34139916
Alignment:
Q  5 gagagcttctgccaaatttgtagcagaagatcctcggcagttaactgcagccggatttctaa 66  Q
    |||||||||||||| ||||||||  |||||||||||||||||||||||||||||||||||||    
T  34139977 gagagcttctgccagatttgtagaggaagatcctcggcagttaactgcagccggatttctaa 34139916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 37 - 151
Target Start/End: Complemental strand, 46738850 - 46738733
Alignment:
Q  37 ctcggcagttaactgcagccggatttctaaaactt--gcatttaactgtcgagggggc-aaaacgtcatttacttatgtggcagagccttatgcaacgtg 133  Q
    |||||||||||||||||||||||||||||||||||  ||| ||||||| |||| |||| |||||||||||| ||  ||||||| | ||||||| || |||    
T  46738850 ctcggcagttaactgcagccggatttctaaaacttcggcagttaactgccgagagggcaaaaacgtcatttgctcgtgtggcacaaccttatgtaatgtg 46738751  T
Q  134 gaaatagcaattctcaaa 151  Q
    | || | |||||||||||    
T  46738750 ggaacaacaattctcaaa 46738733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 5 - 50
Target Start/End: Original strand, 30355206 - 30355251
Alignment:
Q  5 gagagcttctgccaaatttgtagcagaagatcctcggcagttaact 50  Q
    |||||||||||||| |||||||||||||||||||||||||||||||    
T  30355206 gagagcttctgccagatttgtagcagaagatcctcggcagttaact 30355251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 50
Target Start/End: Original strand, 36394905 - 36394950
Alignment:
Q  5 gagagcttctgccaaatttgtagcagaagatcctcggcagttaact 50  Q
    |||||||||||||| |||||||||||||||||||||| ||||||||    
T  36394905 gagagcttctgccagatttgtagcagaagatcctcggtagttaact 36394950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 6 - 50
Target Start/End: Original strand, 46863312 - 46863356
Alignment:
Q  6 agagcttctgccaaatttgtagcagaagatcctcggcagttaact 50  Q
    ||||||||||||| ||||||||||||||||| |||||||||||||    
T  46863312 agagcttctgccagatttgtagcagaagatcttcggcagttaact 46863356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 35 - 90
Target Start/End: Complemental strand, 27657088 - 27657031
Alignment:
Q  35 tcctcggcagttaactgcagccggatttctaaaactt--gcatttaactgtcgagggg 90  Q
    ||||||||||||||||||||||| |||||||||||||  ||| ||||||| |||||||    
T  27657088 tcctcggcagttaactgcagccgtatttctaaaactttggcagttaactgccgagggg 27657031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 50
Target Start/End: Original strand, 28980139 - 28980184
Alignment:
Q  5 gagagcttctgccaaatttgtagcagaagatcctcggcagttaact 50  Q
    ||||||||||| || ||||||||||||| |||||||||||||||||    
T  28980139 gagagcttctgtcagatttgtagcagaaaatcctcggcagttaact 28980184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 50
Target Start/End: Complemental strand, 41047883 - 41047838
Alignment:
Q  5 gagagcttctgccaaatttgtagcagaagatcctcggcagttaact 50  Q
    |||||||||  ||| |||||||||||||||||||||||||||||||    
T  41047883 gagagcttcctccagatttgtagcagaagatcctcggcagttaact 41047838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 71
Target Start/End: Complemental strand, 7119 - 7083
Alignment:
Q  35 tcctcggcagttaactgcagccggatttctaaaactt 71  Q
    ||||||||||||||||||||||| |||||||||||||    
T  7119 tcctcggcagttaactgcagccgtatttctaaaactt 7083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 71
Target Start/End: Original strand, 8070 - 8106
Alignment:
Q  35 tcctcggcagttaactgcagccggatttctaaaactt 71  Q
    ||||||||||||||||||||||| |||||||||||||    
T  8070 tcctcggcagttaactgcagccgtatttctaaaactt 8106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 71
Target Start/End: Original strand, 17840913 - 17840949
Alignment:
Q  35 tcctcggcagttaactgcagccggatttctaaaactt 71  Q
    |||||||||||||||||||| ||||||||||||||||    
T  17840913 tcctcggcagttaactgcagtcggatttctaaaactt 17840949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 71
Target Start/End: Original strand, 42583083 - 42583119
Alignment:
Q  35 tcctcggcagttaactgcagccggatttctaaaactt 71  Q
    ||||||||||||||||||||||| |||||||||||||    
T  42583083 tcctcggcagttaactgcagccgtatttctaaaactt 42583119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 71
Target Start/End: Original strand, 46908496 - 46908532
Alignment:
Q  35 tcctcggcagttaactgcagccggatttctaaaactt 71  Q
    ||||||||||||||||||||||| |||||||||||||    
T  46908496 tcctcggcagttaactgcagccgtatttctaaaactt 46908532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 50
Target Start/End: Complemental strand, 17838750 - 17838711
Alignment:
Q  11 ttctgccaaatttgtagcagaagatcctcggcagttaact 50  Q
    |||||||| ||||||||||||||||| |||||||||||||    
T  17838750 ttctgccagatttgtagcagaagatcgtcggcagttaact 17838711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 93 - 148
Target Start/End: Original strand, 36185640 - 36185695
Alignment:
Q  93 aaaacgtcatttacttatgtggcagagccttatgcaacgtggaaatagcaattctc 148  Q
    |||||||||||||||  ||||||| ||||||||| || ||||||| ||||||||||    
T  36185640 aaaacgtcatttactcgtgtggcacagccttatgtaatgtggaaacagcaattctc 36185695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 93 - 148
Target Start/End: Original strand, 40323715 - 40323770
Alignment:
Q  93 aaaacgtcatttacttatgtggcagagccttatgcaacgtggaaatagcaattctc 148  Q
    |||||||||||||||| ||||||| ||||||||| || |||| || ||||||||||    
T  40323715 aaaacgtcatttacttgtgtggcacagccttatgtaatgtgggaacagcaattctc 40323770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 90
Target Start/End: Original strand, 12210613 - 12210670
Alignment:
Q  35 tcctcggcagttaactgcagccggatttctaaaactt--gcatttaactgtcgagggg 90  Q
    |||||||||||||||||| |||| |||||||||||||  ||| ||||||| |||||||    
T  12210613 tcctcggcagttaactgcggccgtatttctaaaacttcggcagttaactgccgagggg 12210670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 90
Target Start/End: Original strand, 45258027 - 45258084
Alignment:
Q  35 tcctcggcagttaactgcagccggatttctaaaact--tgcatttaactgtcgagggg 90  Q
    ||||||||||||||||||||||| |||||||||| |  |||| ||||||| |||||||    
T  45258027 tcctcggcagttaactgcagccgtatttctaaaatttatgcagttaactgccgagggg 45258084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 63
Target Start/End: Original strand, 618748 - 618776
Alignment:
Q  35 tcctcggcagttaactgcagccggatttc 63  Q
    |||||||||||||||||||||||||||||    
T  618748 tcctcggcagttaactgcagccggatttc 618776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 71
Target Start/End: Complemental strand, 17838700 - 17838664
Alignment:
Q  35 tcctcggcagttaactgcagccggatttctaaaactt 71  Q
    ||||||| |||| ||||||||||||||||||||||||    
T  17838700 tcctcggtagtttactgcagccggatttctaaaactt 17838664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 48
Target Start/End: Complemental strand, 42682085 - 42682057
Alignment:
Q  20 atttgtagcagaagatcctcggcagttaa 48  Q
    |||||||||||||||||||||||||||||    
T  42682085 atttgtagcagaagatcctcggcagttaa 42682057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 45364187 - 45364227
Alignment:
Q  5 gagagcttctgccaaatttgtagcagaagatcctcggcagt 45  Q
    |||||||||| ||| ||||||||| ||||||||||||||||    
T  45364187 gagagcttctaccagatttgtagccgaagatcctcggcagt 45364227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 35 - 148
Target Start/End: Original strand, 29076346 - 29076462
Alignment:
Q  35 tcctcggcagttaactgcagccggatttctaaaactt--gcatttaactgtcgagggggc-aaaacgtcatttacttatgtggcagagccttatgcaacg 131  Q
    ||||| |||||||||||||||||||||||||||||||   || ||||||| ||| ||||| ||||||||| |||||| |||| || ||||||||||||||    
T  29076346 tcctcagcagttaactgcagccggatttctaaaacttcgacagttaactgccgaaggggcaaaaacgtcaattacttgtgtgccacagccttatgcaacg 29076445  T
Q  132 tggaaatagcaattctc 148  Q
    ||| || | ||||||||    
T  29076446 tgggaacaacaattctc 29076462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 35 - 148
Target Start/End: Original strand, 29109879 - 29109995
Alignment:
Q  35 tcctcggcagttaactgcagccggatttctaaaactt--gcatttaactgtcgagggggc-aaaacgtcatttacttatgtggcagagccttatgcaacg 131  Q
    ||||| |||||||||||||||||||||||||||||||   || ||||||| ||| ||||| ||||||||| |||||| |||| || ||||||||||||||    
T  29109879 tcctcagcagttaactgcagccggatttctaaaacttcgacagttaactgccgaaggggcaaaaacgtcaattacttgtgtgccacagccttatgcaacg 29109978  T
Q  132 tggaaatagcaattctc 148  Q
    ||| || | ||||||||    
T  29109979 tgggaacaacaattctc 29109995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 35 - 148
Target Start/End: Original strand, 29111319 - 29111435
Alignment:
Q  35 tcctcggcagttaactgcagccggatttctaaaactt--gcatttaactgtcgagggggc-aaaacgtcatttacttatgtggcagagccttatgcaacg 131  Q
    ||||| |||||||||||||||||||||||||||||||   || ||||||| ||| ||||| ||||||||| |||||| |||| || ||||||||||||||    
T  29111319 tcctcagcagttaactgcagccggatttctaaaacttcgacagttaactgccgaaggggcaaaaacgtcaattacttgtgtgccacagccttatgcaacg 29111418  T
Q  132 tggaaatagcaattctc 148  Q
    ||| || | ||||||||    
T  29111419 tgggaacaacaattctc 29111435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 5 - 96
Target Start/End: Complemental strand, 29061376 - 29061283
Alignment:
Q  5 gagagcttctgccaaatttgtagcagaagatcctcggcagttaactgcagccggatttctaaaactt--gcatttaactgtcgagggggcaaaa 96  Q
    |||||||||| ||| |||||||||||||||||||||| ||||||||||||||| ||||||||  | |  ||| ||||||| |||||||||||||    
T  29061376 gagagcttctaccagatttgtagcagaagatcctcggaagttaactgcagccgaatttctaattcctcggcagttaactgccgagggggcaaaa 29061283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 35 - 152
Target Start/End: Original strand, 14012398 - 14012517
Alignment:
Q  35 tcctcggcagttaactgcagccggatttctaaaactt--gcatttaactgtcgagggggcaaaacgtcatttacttatgtggcagagccttatgcaacgt 132  Q
    ||||||||||||||||| |||||||||||||||||||  ||| |||||||  || |||  |||||||||||||||  ||||||| ||||||||  || ||    
T  14012398 tcctcggcagttaactgaagccggatttctaaaacttcggcagttaactgctgaagggcaaaaacgtcatttactcgtgtggcacagccttattaaatgt 14012497  T
Q  133 ggaaatagcaattctcaaaa 152  Q
    || || | ||||||||||||    
T  14012498 gggaacaacaattctcaaaa 14012517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 5 - 58
Target Start/End: Original strand, 32034359 - 32034412
Alignment:
Q  5 gagagcttctgccaaatttgtagcagaagatcctcggcagttaactgcagccgg 58  Q
    |||| ||||||||| ||||||||||||||||| |||||||||||||||||||||    
T  32034359 gagatcttctgccagatttgtagcagaagatcatcggcagttaactgcagccgg 32034412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 148
Target Start/End: Original strand, 11840273 - 11840389
Alignment:
Q  35 tcctcggcagttaactgcagccggatttctaaaactt--gcatttaactgtcgagggggc-aaaacgtcatttacttatgtggcagagccttatgcaacg 131  Q
    |||||| |||||||||||||||| |||||||||||||  ||| ||||||  | ||||||| ||||| ||| |||||  |||| || |||||||||||| |    
T  11840273 tcctcgacagttaactgcagccgaatttctaaaacttcggcagttaactaccaagggggcaaaaacatcaattactcgtgtgtcacagccttatgcaatg 11840372  T
Q  132 tggaaatagcaattctc 148  Q
    ||| || | ||||||||    
T  11840373 tgggaacaacaattctc 11840389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 50
Target Start/End: Original strand, 12783924 - 12783969
Alignment:
Q  5 gagagcttctgccaaatttgtagcagaagatcctcggcagttaact 50  Q
    |||||||| | ||| |||||||||||||||||||||||||||||||    
T  12783924 gagagctttttccagatttgtagcagaagatcctcggcagttaact 12783969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 50
Target Start/End: Complemental strand, 13401592 - 13401547
Alignment:
Q  5 gagagcttctgccaaatttgtagcagaagatcctcggcagttaact 50  Q
    ||||||||||| || |||||||||||||||||||||| ||||||||    
T  13401592 gagagcttctgtcatatttgtagcagaagatcctcggtagttaact 13401547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 71
Target Start/End: Complemental strand, 2109567 - 2109531
Alignment:
Q  35 tcctcggcagttaactgcagccggatttctaaaactt 71  Q
    ||||||||||||||||||||||| |||||||||||||    
T  2109567 tcctcggcagttaactgcagccgtatttctaaaactt 2109531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 71
Target Start/End: Original strand, 15888823 - 15888859
Alignment:
Q  35 tcctcggcagttaactgcagccggatttctaaaactt 71  Q
    |||||||||||||||||||||||| ||||||||||||    
T  15888823 tcctcggcagttaactgcagccggttttctaaaactt 15888859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 93 - 148
Target Start/End: Original strand, 28362818 - 28362873
Alignment:
Q  93 aaaacgtcatttacttatgtggcagagccttatgcaacgtggaaatagcaattctc 148  Q
    |||||||||||||||  ||||||| ||||||||| || |||| |||||||||||||    
T  28362818 aaaacgtcatttactcgtgtggcacagccttatgtaatgtgggaatagcaattctc 28362873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 48
Target Start/End: Complemental strand, 29065834 - 29065791
Alignment:
Q  5 gagagcttctgccaaatttgtagcagaagatcctcggcagttaa 48  Q
    ||||||||| |||| ||||||||||||||||||||| |||||||    
T  29065834 gagagcttccgccagatttgtagcagaagatcctcgacagttaa 29065791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 48
Target Start/End: Complemental strand, 29074847 - 29074804
Alignment:
Q  5 gagagcttctgccaaatttgtagcagaagatcctcggcagttaa 48  Q
    ||||||||| |||| ||||||||||||||||||||| |||||||    
T  29074847 gagagcttccgccagatttgtagcagaagatcctcgacagttaa 29074804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 48
Target Start/End: Complemental strand, 29079611 - 29079568
Alignment:
Q  5 gagagcttctgccaaatttgtagcagaagatcctcggcagttaa 48  Q
    ||||||||| |||| ||||||||||||||||||||| |||||||    
T  29079611 gagagcttccgccagatttgtagcagaagatcctcgacagttaa 29079568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 48
Target Start/End: Complemental strand, 29107420 - 29107377
Alignment:
Q  5 gagagcttctgccaaatttgtagcagaagatcctcggcagttaa 48  Q
    ||||||||| |||| ||||||||||||||||||||| |||||||    
T  29107420 gagagcttccgccagatttgtagcagaagatcctcgacagttaa 29107377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 35 - 66
Target Start/End: Original strand, 31771764 - 31771795
Alignment:
Q  35 tcctcggcagttaactgcagccggatttctaa 66  Q
    ||||||||||||||||||||||||||||||||    
T  31771764 tcctcggcagttaactgcagccggatttctaa 31771795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 90
Target Start/End: Complemental strand, 25554755 - 25554698
Alignment:
Q  35 tcctcggcagttaactgcagccggatttctaaaactt--gcatttaactgtcgagggg 90  Q
    |||| |||||||||||||||||| |||||||||||||  ||| ||||||| |||||||    
T  25554755 tcctaggcagttaactgcagccgtatttctaaaacttcggcagttaactgccgagggg 25554698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 71
Target Start/End: Original strand, 6760895 - 6760931
Alignment:
Q  35 tcctcggcagttaactgcagccggatttctaaaactt 71  Q
    ||||||||| ||||||||||||| |||||||||||||    
T  6760895 tcctcggcaattaactgcagccgtatttctaaaactt 6760931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 149
Target Start/End: Original strand, 11687976 - 11688032
Alignment:
Q  93 aaaacgtcatttacttatgtggcagagccttatgcaacgtggaaatagcaattctca 149  Q
    |||||||||||||||  ||||||| ||||||||| || |||| || |||||||||||    
T  11687976 aaaacgtcatttactcgtgtggcacagccttatgtaatgtgggaacagcaattctca 11688032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 63
Target Start/End: Complemental strand, 18347091 - 18347063
Alignment:
Q  35 tcctcggcagttaactgcagccggatttc 63  Q
    |||||||||||||||||||||||||||||    
T  18347091 tcctcggcagttaactgcagccggatttc 18347063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 63
Target Start/End: Original strand, 28362754 - 28362782
Alignment:
Q  35 tcctcggcagttaactgcagccggatttc 63  Q
    |||||||||||||||||||||||||||||    
T  28362754 tcctcggcagttaactgcagccggatttc 28362782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 35 - 148
Target Start/End: Original strand, 7189974 - 7190089
Alignment:
Q  35 tcctcggcagttaactgcagccggatttctaaaactt--gcatttaactgtcgagggggcaaaacgtcatttacttatgtggcagagccttatgcaacgt 132  Q
    |||||||||||||||||||||||||||||||||||||  ||| ||||||| |||||||  ||||||| |||||||  ||||||| | ||||||| || ||    
T  7189974 tcctcggcagttaactgcagccggatttctaaaacttcggcagttaactgccgaggggcaaaaacgtaatttactcgtgtggcacaaccttatgtaatgt 7190073  T
Q  133 ggaaatagcaattctc 148  Q
    || || | ||||||||    
T  7190074 gggaacatcaattctc 7190089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 35 - 148
Target Start/End: Original strand, 23347351 - 23347466
Alignment:
Q  35 tcctcggcagttaactgcagccggatttctaaaactt--gcatttaactgtcgagggggcaaaacgtcatttacttatgtggcagagccttatgcaacgt 132  Q
    ||||||| |||||||||||||||||||||||||||||  ||| ||||||| ||| |||  |||||||||||||||  ||||||| ||||||||  || ||    
T  23347351 tcctcggtagttaactgcagccggatttctaaaacttcggcagttaactgccgaagggcaaaaacgtcatttactcgtgtggcacagccttatcaaatgt 23347450  T
Q  133 ggaaatagcaattctc 148  Q
    | ||| ||||||||||    
T  23347451 gtaaacagcaattctc 23347466  T

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Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 37 - 125
Target Start/End: Original strand, 3943217 - 3943307
Alignment:
Q  37 ctcggcagttaactgcagccggatttctaaaactt--gcatttaactgtcgagggggcaaaacgtcatttacttatgtggcagagccttat 125  Q
    |||||||||||||||||||||||||||||||||||  ||| ||||||| ||||| |  |||||||||||||||  ||||||| ||||||||    
T  3943217 ctcggcagttaactgcagccggatttctaaaacttcggcagttaactgccgaggagcaaaaacgtcatttactcgtgtggcatagccttat 3943307  T

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Target: chr2; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 5 - 52
Target Start/End: Original strand, 29093795 - 29093842
Alignment:
Q  5 gagagcttctgccaaatttgtagcagaagatcctcggcagttaactgc 52  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||    
T  29093795 gagagcttctgccagatttgtagcagaagatcctcggcagttaactgc 29093842  T

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Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 35 - 149
Target Start/End: Original strand, 43870144 - 43870261
Alignment:
Q  35 tcctcggcagttaactgcagccggatttctaaaactt--gcatttaactgtcgagggggc-aaaacgtcatttacttatgtggcagagccttatgcaacg 131  Q
    |||||||||| ||||||||| ||||||||||||||||  ||| ||||||| ||| ||||| |||||||||||||||  ||||||| | ||||||| || |    
T  43870144 tcctcggcagctaactgcagtcggatttctaaaacttcggcagttaactgccgatggggcaaaaacgtcatttactcgtgtggcacaaccttatgtaatg 43870243  T
Q  132 tggaaatagcaattctca 149  Q
    ||| || | |||||||||    
T  43870244 tgggaacatcaattctca 43870261  T

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Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 5 - 50
Target Start/End: Original strand, 2920483 - 2920528
Alignment:
Q  5 gagagcttctgccaaatttgtagcagaagatcctcggcagttaact 50  Q
    |||||||||||||| |||||||||||||||||||||||||||||||    
T  2920483 gagagcttctgccagatttgtagcagaagatcctcggcagttaact 2920528  T

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Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 5 - 50
Target Start/End: Complemental strand, 24512273 - 24512228
Alignment:
Q  5 gagagcttctgccaaatttgtagcagaagatcctcggcagttaact 50  Q
    |||||||||||||| |||||||||||||||||||||||||||||||    
T  24512273 gagagcttctgccagatttgtagcagaagatcctcggcagttaact 24512228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 35 - 90
Target Start/End: Original strand, 28477090 - 28477147
Alignment:
Q  35 tcctcggcagttaactgcagccggatttctaaaactt--gcatttaactgtcgagggg 90  Q
    ||||||||||||||||||||||| |||||||||||||  ||| |||||||||||||||    
T  28477090 tcctcggcagttaactgcagccgtatttctaaaacttcggcagttaactgtcgagggg 28477147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 125
Target Start/End: Complemental strand, 23346830 - 23346738
Alignment:
Q  35 tcctcggcagttaactgcagccggatttctaaaactt--gcatttaactgtcgagggggcaaaacgtcatttacttatgtggcagagccttat 125  Q
    |||| ||||||||||||||||||||||| ||||||||  ||| ||||||| ||| |||  |||||||||||||||  ||||||| | ||||||    
T  23346830 tccttggcagttaactgcagccggatttataaaacttcggcagttaactgccgaagggcaaaaacgtcatttactcgtgtggcacaaccttat 23346738  T

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Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 50
Target Start/End: Original strand, 41500201 - 41500246
Alignment:
Q  5 gagagcttctgccaaatttgtagcagaagatcctcggcagttaact 50  Q
    |||||||| ||||| |||||||||||||||||||||||||||||||    
T  41500201 gagagcttatgccagatttgtagcagaagatcctcggcagttaact 41500246  T

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Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 35 - 90
Target Start/End: Original strand, 36510879 - 36510936
Alignment:
Q  35 tcctcggcagttaactgcagccggatttctaaaactt--gcatttaactgtcgagggg 90  Q
    ||||||||||||||||||||||| |||||||||||||  ||| ||||||| |||||||    
T  36510879 tcctcggcagttaactgcagccgtatttctaaaacttcggcagttaactgccgagggg 36510936  T

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Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 89
Target Start/End: Original strand, 30803041 - 30803097
Alignment:
Q  35 tcctcggcagttaactgcagccggatttctaaaactt--gcatttaactgtcgaggg 89  Q
    ||||||||||||||||||||||| |||||||||||||  ||| ||||||| ||||||    
T  30803041 tcctcggcagttaactgcagccgtatttctaaaacttcggcagttaactgccgaggg 30803097  T

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Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 71
Target Start/End: Original strand, 10425842 - 10425878
Alignment:
Q  35 tcctcggcagttaactgcagccggatttctaaaactt 71  Q
    ||||||||||||||||||||||| |||||||||||||    
T  10425842 tcctcggcagttaactgcagccgtatttctaaaactt 10425878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 157
Target Start/End: Complemental strand, 39377690 - 39377626
Alignment:
Q  93 aaaacgtcatttacttatgtggcagagccttatgcaacgtggaaatagcaattctcaaaatgaaa 157  Q
    |||||||||||||||  ||||||| ||||||||| || ||||||| |||||||||| || |||||    
T  39377690 aaaacgtcatttactcgtgtggcacagccttatgtaatgtggaaacagcaattctcgaattgaaa 39377626  T

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Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 40679564 - 40679608
Alignment:
Q  5 gagagcttctgccaaatttgtagcagaagatcctcggcagttaac 49  Q
    ||||| |||| ||| ||||||||||||||||||||||||||||||    
T  40679564 gagaggttcttccagatttgtagcagaagatcctcggcagttaac 40679608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 27 - 62
Target Start/End: Complemental strand, 28472171 - 28472136
Alignment:
Q  27 gcagaagatcctcggcagttaactgcagccggattt 62  Q
    ||||||||||||| ||||||||||||||||||||||    
T  28472171 gcagaagatcctcagcagttaactgcagccggattt 28472136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 49
Target Start/End: Complemental strand, 26858213 - 26858175
Alignment:
Q  11 ttctgccaaatttgtagcagaagatcctcggcagttaac 49  Q
    ||||| || ||||||||||||||||||||||||||||||    
T  26858213 ttctgtcacatttgtagcagaagatcctcggcagttaac 26858175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 50
Target Start/End: Complemental strand, 2648223 - 2648178
Alignment:
Q  5 gagagcttctgccaaatttgtagcagaagatcctcggcagttaact 50  Q
    ||||| |||||||| ||||||||||||||||| |||||| ||||||    
T  2648223 gagagtttctgccagatttgtagcagaagatcatcggcaattaact 2648178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 50
Target Start/End: Original strand, 10365759 - 10365804
Alignment:
Q  5 gagagcttctgccaaatttgtagcagaagatcctcggcagttaact 50  Q
    |||||||| ||||| |||||||||| ||||||||||||| ||||||    
T  10365759 gagagcttatgccagatttgtagcaaaagatcctcggcatttaact 10365804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 50
Target Start/End: Complemental strand, 43491215 - 43491170
Alignment:
Q  5 gagagcttctgccaaatttgtagcagaagatcctcggcagttaact 50  Q
    |||||||||||||| |||| || |||||||| ||||||||||||||    
T  43491215 gagagcttctgccagatttataacagaagattctcggcagttaact 43491170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 63
Target Start/End: Complemental strand, 1096645 - 1096617
Alignment:
Q  35 tcctcggcagttaactgcagccggatttc 63  Q
    |||||||||||||||||||||||||||||    
T  1096645 tcctcggcagttaactgcagccggatttc 1096617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 63
Target Start/End: Complemental strand, 3795387 - 3795359
Alignment:
Q  35 tcctcggcagttaactgcagccggatttc 63  Q
    |||||||||||||||||||||||||||||    
T  3795387 tcctcggcagttaactgcagccggatttc 3795359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 63
Target Start/End: Original strand, 3803566 - 3803594
Alignment:
Q  35 tcctcggcagttaactgcagccggatttc 63  Q
    |||||||||||||||||||||||||||||    
T  3803566 tcctcggcagttaactgcagccggatttc 3803594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 71
Target Start/End: Complemental strand, 10424889 - 10424853
Alignment:
Q  35 tcctcggcagttaactgcagccggatttctaaaactt 71  Q
    ||||||||||||||||| ||||| |||||||||||||    
T  10424889 tcctcggcagttaactgtagccgtatttctaaaactt 10424853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 63
Target Start/End: Original strand, 20951069 - 20951097
Alignment:
Q  35 tcctcggcagttaactgcagccggatttc 63  Q
    |||||||||||||||||||||||||||||    
T  20951069 tcctcggcagttaactgcagccggatttc 20951097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 63
Target Start/End: Original strand, 27276397 - 27276425
Alignment:
Q  35 tcctcggcagttaactgcagccggatttc 63  Q
    |||||||||||||||||||||||||||||    
T  27276397 tcctcggcagttaactgcagccggatttc 27276425  T

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Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 63
Target Start/End: Complemental strand, 38945812 - 38945784
Alignment:
Q  35 tcctcggcagttaactgcagccggatttc 63  Q
    |||||||||||||||||||||||||||||    
T  38945812 tcctcggcagttaactgcagccggatttc 38945784  T

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Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 54)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 35 - 134
Target Start/End: Complemental strand, 55385187 - 55385085
Alignment:
Q  35 tcctcggcagttaactgcagccggatttctaaaactt--gcatttaactgtcgagggggc-aaaacgtcatttacttatgtggcagagccttatgcaacg 131  Q
    |||||||||||||||||||||||||||||||||||||  ||| ||||||| ||||||||| ||||||||| |||||  |||| || | |||||||||| |    
T  55385187 tcctcggcagttaactgcagccggatttctaaaacttcggcagttaactgccgagggggcaaaaacgtcaattactcgtgtgccacaaccttatgcaatg 55385088  T
Q  132 tgg 134  Q
    |||    
T  55385087 tgg 55385085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 35 - 149
Target Start/End: Original strand, 16647170 - 16647287
Alignment:
Q  35 tcctcggcagttaactgcagccggatttctaaaactt--gcatttaactgtcgagggggc-aaaacgtcatttacttatgtggcagagccttatgcaacg 131  Q
    ||||||||||||||||||||||||||||||||||| |  ||| ||||||| ||||||||| |||||||||  ||||  |||| |||| |||||||||| |    
T  16647170 tcctcggcagttaactgcagccggatttctaaaacatcggcagttaactgccgagggggcaaaaacgtcaagtactcgtgtgccagaaccttatgcaatg 16647269  T
Q  132 tggaaatagcaattctca 149  Q
    ||| || | |||||||||    
T  16647270 tgggaacaacaattctca 16647287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 35 - 148
Target Start/End: Original strand, 43478853 - 43478969
Alignment:
Q  35 tcctcggcagttaactgcagccggatttctaaaactt--gcatttaactgtcgagggggc-aaaacgtcatttacttatgtggcagagccttatgcaacg 131  Q
    |||||||||||||||||||||||||||||||||||||  ||| ||||||| ||||||| | ||||| |||||||||  ||||||| | ||||||| || |    
T  43478853 tcctcggcagttaactgcagccggatttctaaaacttcagcagttaactgccgaggggacaaaaacatcatttactcgtgtggcacaaccttatgtaatg 43478952  T
Q  132 tggaaatagcaattctc 148  Q
    ||| || | ||||||||    
T  43478953 tgggaacaacaattctc 43478969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 5 - 50
Target Start/End: Original strand, 34694401 - 34694446
Alignment:
Q  5 gagagcttctgccaaatttgtagcagaagatcctcggcagttaact 50  Q
    |||||||||||||| |||||||||||||||||||||||||||||||    
T  34694401 gagagcttctgccagatttgtagcagaagatcctcggcagttaact 34694446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 5 - 50
Target Start/End: Original strand, 45101815 - 45101860
Alignment:
Q  5 gagagcttctgccaaatttgtagcagaagatcctcggcagttaact 50  Q
    |||||||||||||| |||||||||||||||||||||||||||||||    
T  45101815 gagagcttctgccagatttgtagcagaagatcctcggcagttaact 45101860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 5 - 50
Target Start/End: Original strand, 55207630 - 55207675
Alignment:
Q  5 gagagcttctgccaaatttgtagcagaagatcctcggcagttaact 50  Q
    |||||||||||||| |||||||||||||||||||||||||||||||    
T  55207630 gagagcttctgccagatttgtagcagaagatcctcggcagttaact 55207675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 19454318 - 19454366
Alignment:
Q  5 gagagcttctgccaaatttgtagcagaagatcctcggcagttaactgca 53  Q
    |||||||||||||| |||||||| |||||||||||||||||||||||||    
T  19454318 gagagcttctgccagatttgtagtagaagatcctcggcagttaactgca 19454366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 35 - 126
Target Start/End: Complemental strand, 43476242 - 43476147
Alignment:
Q  35 tcctcggcagttaactgcagccgga-tttctaaaactt--gcatttaactgtcgagggggc-aaaacgtcatttacttatgtggcagagccttatg 126  Q
    ||||||||||||||||||||||||| ||||||||||||  ||| ||||||  ||||||||| |||||||||||||||  ||||||| | |||||||    
T  43476242 tcctcggcagttaactgcagccggattttctaaaacttcggcagttaacttccgagggggcaaaaacgtcatttactcgtgtggcacaaccttatg 43476147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 35 - 96
Target Start/End: Complemental strand, 48246462 - 48246399
Alignment:
Q  35 tcctcggcagttaactgcagccggatttctaaaactt--gcatttaactgtcgagggggcaaaa 96  Q
    |||||| ||||||||||||||||||||||||||||||  ||| ||||||| |||||||||||||    
T  48246462 tcctcgacagttaactgcagccggatttctaaaacttcagcagttaactgccgagggggcaaaa 48246399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 35 - 149
Target Start/End: Original strand, 48250892 - 48251009
Alignment:
Q  35 tcctcggcagttaactgcagccggatttctaaaactt--gcatttaactgtcgagggggcaaaa-cgtcatttacttatgtggcagagccttatgcaacg 131  Q
    ||||||||||||||||||||||||| ||| ||  | |  ||| ||||||| ||||||||||||| ||||||||| |||||||||| | ||||||| || |    
T  48250892 tcctcggcagttaactgcagccggaattcaaattcctcagcagttaactgccgagggggcaaaaacgtcatttatttatgtggcacaaccttatgtaatg 48250991  T
Q  132 tggaaatagcaattctca 149  Q
    ||| || | |||||||||    
T  48250992 tgggaacaacaattctca 48251009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 152
Target Start/End: Original strand, 600567 - 600687
Alignment:
Q  35 tcctcggcagttaactgcagccggatttctaaaactt--gcatttaactgtcgagggggc-aaaacgtcatttacttatgtggcagagccttatgcaacg 131  Q
    |||||| ||||||||||| |||||||||| |||||||  ||| |||||||||||||| || |||||||||||||||  |||| |  |||||| | ||| |    
T  600567 tcctcgacagttaactgcggccggatttccaaaacttcggcagttaactgtcgagggcgcaaaaacgtcatttactcgtgtgccgcagccttctacaatg 600666  T
Q  132 tggaaatagcaattctcaaaa 152  Q
    ||| || | ||||||||||||    
T  600667 tgggaacaacaattctcaaaa 600687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 50
Target Start/End: Original strand, 24703382 - 24703427
Alignment:
Q  5 gagagcttctgccaaatttgtagcagaagatcctcggcagttaact 50  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||    
T  24703382 gagagcttctgccagatttgtagcagaagatcatcggcagttaact 24703427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 50
Target Start/End: Complemental strand, 41803104 - 41803059
Alignment:
Q  5 gagagcttctgccaaatttgtagcagaagatcctcggcagttaact 50  Q
    |||||||||||||| |||||||||| ||||||||||||||||||||    
T  41803104 gagagcttctgccagatttgtagcaaaagatcctcggcagttaact 41803059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 50
Target Start/End: Original strand, 51402365 - 51402410
Alignment:
Q  5 gagagcttctgccaaatttgtagcagaagatcctcggcagttaact 50  Q
    ||||||||||| || |||||||||||||||||||||||||||||||    
T  51402365 gagagcttctgacagatttgtagcagaagatcctcggcagttaact 51402410  T

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Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 50
Target Start/End: Original strand, 51696541 - 51696586
Alignment:
Q  5 gagagcttctgccaaatttgtagcagaagatcctcggcagttaact 50  Q
    |||||||||||||| ||||| |||||||||||||||||||||||||    
T  51696541 gagagcttctgccagatttgcagcagaagatcctcggcagttaact 51696586  T

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Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 50
Target Start/End: Complemental strand, 55385243 - 55385198
Alignment:
Q  5 gagagcttctgccaaatttgtagcagaagatcctcggcagttaact 50  Q
    |||||||||||||| ||||||||||||||||||||| |||||||||    
T  55385243 gagagcttctgccagatttgtagcagaagatcctcgacagttaact 55385198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 35 - 71
Target Start/End: Complemental strand, 4002790 - 4002754
Alignment:
Q  35 tcctcggcagttaactgcagccggatttctaaaactt 71  Q
    |||||||||||||||||||||||||||||||||||||    
T  4002790 tcctcggcagttaactgcagccggatttctaaaactt 4002754  T

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Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 35 - 71
Target Start/End: Original strand, 4004826 - 4004862
Alignment:
Q  35 tcctcggcagttaactgcagccggatttctaaaactt 71  Q
    |||||||||||||||||||||||||||||||||||||    
T  4004826 tcctcggcagttaactgcagccggatttctaaaactt 4004862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 50
Target Start/End: Original strand, 2271286 - 2271325
Alignment:
Q  11 ttctgccaaatttgtagcagaagatcctcggcagttaact 50  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  2271286 ttctgccagatttgtagcagaagatcctcggcagttaact 2271325  T

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Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 71
Target Start/End: Original strand, 2271337 - 2271372
Alignment:
Q  36 cctcggcagttaactgcagccggatttctaaaactt 71  Q
    ||||||||||||||||||||||||||||||||||||    
T  2271337 cctcggcagttaactgcagccggatttctaaaactt 2271372  T

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Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 50
Target Start/End: Complemental strand, 36134423 - 36134384
Alignment:
Q  11 ttctgccaaatttgtagcagaagatcctcggcagttaact 50  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  36134423 ttctgccagatttgtagcagaagatcctcggcagttaact 36134384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 62
Target Start/End: Complemental strand, 46402440 - 46402405
Alignment:
Q  27 gcagaagatcctcggcagttaactgcagccggattt 62  Q
    ||||||||||||||||||||||||||||||||||||    
T  46402440 gcagaagatcctcggcagttaactgcagccggattt 46402405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 35 - 90
Target Start/End: Original strand, 28817024 - 28817081
Alignment:
Q  35 tcctcggcagttaactgcagccggatttctaaaactt--gcatttaactgtcgagggg 90  Q
    ||||||||||||||||||||||| |||||||||||||  ||| ||||||| |||||||    
T  28817024 tcctcggcagttaactgcagccgtatttctaaaactttggcagttaactgccgagggg 28817081  T

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Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 4 - 50
Target Start/End: Original strand, 49219757 - 49219803
Alignment:
Q  4 ggagagcttctgccaaatttgtagcagaagatcctcggcagttaact 50  Q
    |||||||||||| ||||||||||||||||||||||||  ||||||||    
T  49219757 ggagagcttctgtcaaatttgtagcagaagatcctcgatagttaact 49219803  T

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Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 89
Target Start/End: Original strand, 34543159 - 34543215
Alignment:
Q  35 tcctcggcagttaactgcagccggatttctaaaactt--gcatttaactgtcgaggg 89  Q
    ||||||||||||||||||||||| |||||||||||||  ||| ||||||| ||||||    
T  34543159 tcctcggcagttaactgcagccgtatttctaaaacttcggcagttaactgccgaggg 34543215  T

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Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 41137814 - 41137773
Alignment:
Q  5 gagagcttctgccaaatttgtagcagaagatcctcggcagtt 46  Q
    |||||||||||||| |||||||||||||||||||||| ||||    
T  41137814 gagagcttctgccagatttgtagcagaagatcctcggtagtt 41137773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 41577181 - 41577140
Alignment:
Q  5 gagagcttctgccaaatttgtagcagaagatcctcggcagtt 46  Q
    |||||||||||| | |||||||||||||||||||||||||||    
T  41577181 gagagcttctgcaagatttgtagcagaagatcctcggcagtt 41577140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 50
Target Start/End: Complemental strand, 43476298 - 43476253
Alignment:
Q  5 gagagcttctgccaaatttgtagcagaagatcctcggcagttaact 50  Q
    ||||||||||| || |||||||||| ||||||||||||||||||||    
T  43476298 gagagcttctgtcagatttgtagcaaaagatcctcggcagttaact 43476253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 50
Target Start/End: Complemental strand, 49609489 - 49609444
Alignment:
Q  5 gagagcttctgccaaatttgtagcagaagatcctcggcagttaact 50  Q
    |||||||| ||||| |||||||||||||| ||||||||||||||||    
T  49609489 gagagcttatgccagatttgtagcagaagttcctcggcagttaact 49609444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 50
Target Start/End: Original strand, 52570533 - 52570578
Alignment:
Q  5 gagagcttctgccaaatttgtagcagaagatcctcggcagttaact 50  Q
    ||||| |||||||| |||||||| ||||||||||||||||||||||    
T  52570533 gagagtttctgccagatttgtagtagaagatcctcggcagttaact 52570578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 71
Target Start/End: Complemental strand, 12897874 - 12897838
Alignment:
Q  35 tcctcggcagttaactgcagccggatttctaaaactt 71  Q
    ||||||||||||||||||||||| |||||||||||||    
T  12897874 tcctcggcagttaactgcagccgtatttctaaaactt 12897838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 71
Target Start/End: Original strand, 27739590 - 27739626
Alignment:
Q  35 tcctcggcagttaactgcagccggatttctaaaactt 71  Q
    ||||||||||||||||||||||| |||||||||||||    
T  27739590 tcctcggcagttaactgcagccgtatttctaaaactt 27739626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 71
Target Start/End: Complemental strand, 36134373 - 36134337
Alignment:
Q  35 tcctcggcagttaactgcagccggatttctaaaactt 71  Q
    |||||||||||||||||||| ||||||||||||||||    
T  36134373 tcctcggcagttaactgcagacggatttctaaaactt 36134337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 48
Target Start/End: Complemental strand, 7245198 - 7245155
Alignment:
Q  5 gagagcttctgccaaatttgtagcagaagatcctcggcagttaa 48  Q
    ||||||||||| || |||||||||||||||| ||||||||||||    
T  7245198 gagagcttctgtcagatttgtagcagaagatactcggcagttaa 7245155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 35 - 66
Target Start/End: Original strand, 49219814 - 49219845
Alignment:
Q  35 tcctcggcagttaactgcagccggatttctaa 66  Q
    ||||||||||||||||||||||||||||||||    
T  49219814 tcctcggcagttaactgcagccggatttctaa 49219845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 38 - 90
Target Start/End: Original strand, 50998706 - 50998760
Alignment:
Q  38 tcggcagttaactgcagccggatttctaaaactt--gcatttaactgtcgagggg 90  Q
    ||||||||||||||||||||||||| ||||||||  ||| ||||||| |||||||    
T  50998706 tcggcagttaactgcagccggatttataaaacttcggcagttaactgccgagggg 50998760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 90
Target Start/End: Complemental strand, 2267080 - 2267023
Alignment:
Q  35 tcctcggcagttaactgcagccggatttctaaaactt--gcatttaactgtcgagggg 90  Q
    ||||||| |||||||||||||||||| ||||||||||   || |||||||||||||||    
T  2267080 tcctcggtagttaactgcagccggatatctaaaacttcgacaattaactgtcgagggg 2267023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 11 - 48
Target Start/End: Original strand, 4004776 - 4004813
Alignment:
Q  11 ttctgccaaatttgtagcagaagatcctcggcagttaa 48  Q
    ||||||||  ||||||||||||||||||||||||||||    
T  4004776 ttctgccaggtttgtagcagaagatcctcggcagttaa 4004813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 76 - 152
Target Start/End: Original strand, 5138333 - 5138410
Alignment:
Q  76 ttaactgtcgagggggcaaaa-cgtcatttacttatgtggcagagccttatgcaacgtggaaatagcaattctcaaaa 152  Q
    ||||||||||  ||||||||| |||||||||||  ||||||| |||||||||  | |||| || ||||||||||||||    
T  5138333 ttaactgtcgtaggggcaaaaacgtcatttactcgtgtggcacagccttatgtcatgtgggaacagcaattctcaaaa 5138410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 50
Target Start/End: Original strand, 13896843 - 13896888
Alignment:
Q  5 gagagcttctgccaaatttgtagcagaagatcctcggcagttaact 50  Q
    |||||||||||||| |||||||| |||| ||| |||||||||||||    
T  13896843 gagagcttctgccagatttgtagtagaaaatcttcggcagttaact 13896888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 68
Target Start/End: Original strand, 16484479 - 16484512
Alignment:
Q  35 tcctcggcagttaactgcagccggatttctaaaa 68  Q
    ||||||||||||||||||||||||||| ||||||    
T  16484479 tcctcggcagttaactgcagccggattactaaaa 16484512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 36 - 90
Target Start/End: Complemental strand, 19750091 - 19750035
Alignment:
Q  36 cctcggcagttaactgcagccggatttctaaaactt--gcatttaactgtcgagggg 90  Q
    |||||||||||||||||||||| |||||||||| ||  ||| ||||||| |||||||    
T  19750091 cctcggcagttaactgcagccgtatttctaaaatttcggcagttaactgccgagggg 19750035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 50
Target Start/End: Complemental strand, 43568972 - 43568927
Alignment:
Q  5 gagagcttctgccaaatttgtagcagaagatcctcggcagttaact 50  Q
    ||||||||||| || ||||||| |||||||||||| ||||||||||    
T  43568972 gagagcttctgtcagatttgtaacagaagatcctcagcagttaact 43568927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 63
Target Start/End: Complemental strand, 2743448 - 2743420
Alignment:
Q  35 tcctcggcagttaactgcagccggatttc 63  Q
    |||||||||||||||||||||||||||||    
T  2743448 tcctcggcagttaactgcagccggatttc 2743420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 63
Target Start/End: Original strand, 4002528 - 4002556
Alignment:
Q  35 tcctcggcagttaactgcagccggatttc 63  Q
    |||||||||||||||||||||||||||||    
T  4002528 tcctcggcagttaactgcagccggatttc 4002556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 71
Target Start/End: Complemental strand, 10492077 - 10492041
Alignment:
Q  35 tcctcggcagttaactgcagccggatttctaaaactt 71  Q
    |||||| |||||||||||||||| |||||||||||||    
T  10492077 tcctcgtcagttaactgcagccgtatttctaaaactt 10492041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 71
Target Start/End: Original strand, 11249547 - 11249583
Alignment:
Q  35 tcctcggcagttaactgcagccggatttctaaaactt 71  Q
    ||||||||||||||||||||||  |||||||||||||    
T  11249547 tcctcggcagttaactgcagccatatttctaaaactt 11249583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 63
Target Start/End: Complemental strand, 13743343 - 13743315
Alignment:
Q  35 tcctcggcagttaactgcagccggatttc 63  Q
    |||||||||||||||||||||||||||||    
T  13743343 tcctcggcagttaactgcagccggatttc 13743315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 71
Target Start/End: Original strand, 14043921 - 14043957
Alignment:
Q  35 tcctcggcagttaactgcagccggatttctaaaactt 71  Q
    |||||||||||||||||||||||  ||||||||||||    
T  14043921 tcctcggcagttaactgcagccgattttctaaaactt 14043957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #50
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 90
Target Start/End: Complemental strand, 19988507 - 19988452
Alignment:
Q  37 ctcggcagttaactgcagccggatttctaaaactt--gcatttaactgtcgagggg 90  Q
    ||||||||| ||||||||||| |||||||||||||  ||| ||||||| |||||||    
T  19988507 ctcggcagtcaactgcagccgtatttctaaaacttcggcagttaactgccgagggg 19988452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #51
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 71
Target Start/End: Original strand, 24703438 - 24703474
Alignment:
Q  35 tcctcggcagttaactgcagccggatttctaaaactt 71  Q
    ||||||||||||||||||| ||| |||||||||||||    
T  24703438 tcctcggcagttaactgcatccgaatttctaaaactt 24703474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #52
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 63
Target Start/End: Complemental strand, 41137768 - 41137740
Alignment:
Q  35 tcctcggcagttaactgcagccggatttc 63  Q
    |||||||||||||||||||||||||||||    
T  41137768 tcctcggcagttaactgcagccggatttc 41137740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #53
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 63
Target Start/End: Complemental strand, 50953352 - 50953324
Alignment:
Q  35 tcctcggcagttaactgcagccggatttc 63  Q
    |||||||||||||||||||||||||||||    
T  50953352 tcctcggcagttaactgcagccggatttc 50953324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #54
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 63
Target Start/End: Original strand, 50957689 - 50957717
Alignment:
Q  35 tcctcggcagttaactgcagccggatttc 63  Q
    |||||||||||||||||||||||||||||    
T  50957689 tcctcggcagttaactgcagccggatttc 50957717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 50
Target Start/End: Original strand, 12361 - 12400
Alignment:
Q  11 ttctgccaaatttgtagcagaagatcctcggcagttaact 50  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  12361 ttctgccagatttgtagcagaagatcctcggcagttaact 12400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 38 - 71
Target Start/End: Original strand, 12414 - 12447
Alignment:
Q  38 tcggcagttaactgcagccggatttctaaaactt 71  Q
    ||||||||||||||||||||||||||||||||||    
T  12414 tcggcagttaactgcagccggatttctaaaactt 12447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0192 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0192
Description:

Target: scaffold0192; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 8 - 50
Target Start/End: Original strand, 18869 - 18911
Alignment:
Q  8 agcttctgccaaatttgtagcagaagatcctcggcagttaact 50  Q
    ||||||||||| ||||||||||||||||||||| |||||||||    
T  18869 agcttctgccagatttgtagcagaagatcctcgacagttaact 18911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 42 - 151
Target Start/End: Original strand, 18323 - 18435
Alignment:
Q  42 cagttaactgcagccggatttctaaaactt--gcatttaactgtcgagggggcaaaa-cgtcatttacttatgtggcagagccttatgcaacgtggaaat 138  Q
    |||| |||||||| ||||||||||||||||  ||| ||||| | ||| ||| ||||| ||||| |||||| |||| || | ||||||||||||||| ||     
T  18323 cagtaaactgcagtcggatttctaaaacttcggcagttaaccgccgaagggacaaaaacgtcaattacttgtgtgccacatccttatgcaacgtgggaac 18422  T
Q  139 agcaattctcaaa 151  Q
    | |||||||||||    
T  18423 aacaattctcaaa 18435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 42 - 151
Target Start/End: Complemental strand, 54521 - 54409
Alignment:
Q  42 cagttaactgcagccggatttctaaaactt--gcatttaactgtcgagggggcaaaa-cgtcatttacttatgtggcagagccttatgcaacgtggaaat 138  Q
    |||| |||||||| ||||||||||||||||  ||| ||||| | ||| ||| ||||| ||||| |||||| |||| || | ||||||||||||||| ||     
T  54521 cagtaaactgcagtcggatttctaaaacttcggcagttaaccgccgaagggacaaaaacgtcaattacttgtgtgccacatccttatgcaacgtgggaac 54422  T
Q  139 agcaattctcaaa 151  Q
    | |||||||||||    
T  54421 aacaattctcaaa 54409  T

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Target: scaffold0341 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 63
Target Start/End: Original strand, 17374 - 17402
Alignment:
Q  35 tcctcggcagttaactgcagccggatttc 63  Q
    |||||||||||||||||||||||||||||    
T  17374 tcctcggcagttaactgcagccggatttc 17402  T

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Target: scaffold0260 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0260
Description:

Target: scaffold0260; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 63
Target Start/End: Complemental strand, 11830 - 11802
Alignment:
Q  35 tcctcggcagttaactgcagccggatttc 63  Q
    |||||||||||||||||||||||||||||    
T  11830 tcctcggcagttaactgcagccggatttc 11802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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