View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21051_low_4 (Length: 238)
Name: NF21051_low_4
Description: NF21051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21051_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 131; Significance: 4e-68; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 14 - 221
Target Start/End: Original strand, 17466698 - 17466905
Alignment:
| Q |
14 |
gatgaagaggattcgacagaggtgtgtannnnnnngtgtgtttaagatcttacaattgattgnnnnnnnnnnnntaataattgattattggttattatgt |
113 |
Q |
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| T |
17466698 |
gatgaagaggattcgacagaggtgtgtatttttttgtgtgtttaagatattacaattgattgaaaaggcaaaaataataattgattattggttattatgt |
17466797 |
T |
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| Q |
114 |
atggattggatagtttgtcattgtctaaggatgattctgatcgtgaagatgttattaacgagaatgaatctgaaatatcagagaaaaccattgaaggcag |
213 |
Q |
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| T |
17466798 |
agggattggatagtttgtcattgtctaaggatgattctgatcgtgaagatgttattaacgagaatgaatatgaaataccagaggaaaccattgaaggcag |
17466897 |
T |
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| Q |
214 |
tagaaatg |
221 |
Q |
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| T |
17466898 |
tagaaatg |
17466905 |
T |
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Back To:
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Target: chr8 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 49 - 221
Target Start/End: Original strand, 43116761 - 43116933
Alignment:
| Q |
49 |
gtgtgtttaagatcttacaattgattgnnnnnnnnnnnntaataattgattattggttattatgtatggattggatagtttgtcattgtctaaggatgat |
148 |
Q |
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| T |
43116761 |
gtgtgtttaagatcttacaattgattgaaaaagaaaaaataataactgattattggttattatgcagggattggatagtttgtcattgtttaaggatgat |
43116860 |
T |
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| Q |
149 |
tctgatcgtgaagatgttattaacgagaatgaatctgaaatatcagagaaaaccattgaaggcagtagaaatg |
221 |
Q |
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| T |
43116861 |
tctgatcgtgaagatgttattaacgagaatgaatctgaaataccaaaggaaaccattgaaggcagtagaaatg |
43116933 |
T |
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