View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21051_low_5 (Length: 208)
Name: NF21051_low_5
Description: NF21051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21051_low_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 173; Significance: 3e-93; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 17 - 201
Target Start/End: Original strand, 43983963 - 43984147
Alignment:
| Q |
17 |
aaacctaaggttcagagtttaattattgactctcacatatttcccaacgaaattaattactgctaagcggtgaaaatttcttaccaatatcgtgctaaac |
116 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
43983963 |
aaacataaggttcagagtttaattattgactctcacatatttcccaacgaaattaattactgctaagcggtgaaaatttcgtaccaatatcgtgctaaac |
43984062 |
T |
|
| Q |
117 |
caaaaaagatgtagcaaaatcagacacggcatcttatgcagatatcactcaattctcttggactcctactcttctctgctcctcc |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
43984063 |
caaaaaagatgtagcaaaatcagacacggcatcttatgcagatatcactcaattctcttggactcctactcttctcttctcctcc |
43984147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University