View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21052_high_4 (Length: 296)
Name: NF21052_high_4
Description: NF21052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21052_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 44314722 - 44315007
Alignment:
| Q |
1 |
ctagaaatgttctctgtgatgctgtggagaagcaccatgcttcgattttggtcgtaggtagtcatggttatggagctataaaaaggtatgtgttcattca |
100 |
Q |
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| T |
44314722 |
ctagaaatgttctctgtgatgctgtggacaagcaccatgcttctattttggttgtaggtagtcatggttacggagctataaaaaggtatgtgttcattca |
44314821 |
T |
|
| Q |
101 |
gatcccaattatcatgctattgcattgcgataatagctttaaaggagtctgat-aatacttatcctcgtactttctagtattatcgagctatgaagcact |
199 |
Q |
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| T |
44314822 |
gatcccaattatcatgctattgcattgcgataatagctttaaaggagtctgataaatacttatactggtactttctagtattatcgagctatgaagcact |
44314921 |
T |
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| Q |
200 |
gacattgaacaccattgacgcattgacattgataataaattaagaaaatataaataatttaatttaatatcatgtgttagtttcat |
285 |
Q |
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| T |
44314922 |
gacattgaacaccattgacgcattgacattgataataagttaagaaaatataaataatttaatttaatatcatttgttagtttcat |
44315007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 20232815 - 20233101
Alignment:
| Q |
1 |
ctagaaatgttctctgtgatgctgtggagaagcaccatgcttcgattttggtcgtaggtagtcatggttatggagctataaaaaggtatgtgttcattca |
100 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
20232815 |
ctagaaatgttctctgtgatgctgtggacaagcaccatgcttctattttggttgtaggtagtcatggttacggagctataaaaaggtatgtgttcattca |
20232914 |
T |
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| Q |
101 |
gatcccaattatcatgctattgcattgcgataatagctttaaaggagtctgat-aatacttatcctcgtactttctagtattatcgagctatgaagcact |
199 |
Q |
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| T |
20232915 |
gatcccaattatcatgctattgcattgcgataatagctttaaaggagtctgataaatacttatactggtactttctagtattatcgagctatgaagcact |
20233014 |
T |
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| Q |
200 |
gacattgaacaccattgacgcattgacattgataataaattaagaaaatataaa-taatttaatttaatatcatgtgttagtttcat |
285 |
Q |
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| T |
20233015 |
gacattgaacaccattgacgcattgacattgataataagttaagaaaatataaattaatttaatttaatatcatttgttagtttcat |
20233101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 39637540 - 39637451
Alignment:
| Q |
1 |
ctagaaatgttctctgtgatgctgtggagaagcaccatgcttcgattttggtcgtaggtagtcatggttatggagctataaaaaggtatg |
90 |
Q |
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| T |
39637540 |
ctagaaatgttctctgtgatacagtggaaaagtaccgtgcttcaatcttggttgtgggtagtcacggttatggggctataaaaaggtatg |
39637451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 39646208 - 39646119
Alignment:
| Q |
1 |
ctagaaatgttctctgtgatgctgtggagaagcaccatgcttcgattttggtcgtaggtagtcatggttatggagctataaaaaggtatg |
90 |
Q |
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|||||||||||||||||||| | ||||| ||| ||| |||||| || ||||| || |||||||| |||||||| |||||||||||||||| |
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| T |
39646208 |
ctagaaatgttctctgtgatacagtggaaaagtaccgtgcttcaatcttggttgtgggtagtcacggttatggggctataaaaaggtatg |
39646119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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