View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21052_low_1 (Length: 379)

Name: NF21052_low_1
Description: NF21052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21052_low_1
NF21052_low_1
[»] chr8 (12 HSPs)
chr8 (1-357)||(20232463-20232819)
chr8 (277-356)||(38287804-38287882)
chr8 (272-357)||(8605444-8605528)
chr8 (279-355)||(17607282-17607356)
chr8 (298-357)||(18464049-18464108)
chr8 (281-357)||(9596059-9596134)
chr8 (298-357)||(14019787-14019846)
chr8 (296-357)||(15711474-15711534)
chr8 (322-357)||(8276552-8276587)
chr8 (298-357)||(35908658-35908716)
chr8 (278-353)||(39587928-39588001)
chr8 (157-191)||(14019786-14019820)
[»] chr7 (25 HSPs)
chr7 (1-357)||(44314370-44314726)
chr7 (253-357)||(36270536-36270645)
chr7 (272-357)||(37756004-37756089)
chr7 (277-357)||(47346160-47346240)
chr7 (247-357)||(36495813-36495927)
chr7 (277-357)||(24240244-24240324)
chr7 (298-357)||(34748757-34748816)
chr7 (298-356)||(36270764-36270822)
chr7 (296-357)||(33909114-33909175)
chr7 (296-357)||(39550044-39550104)
chr7 (298-357)||(27585235-27585294)
chr7 (298-357)||(36495645-36495704)
chr7 (298-357)||(37756230-37756289)
chr7 (298-357)||(37761978-37762037)
chr7 (277-357)||(19843666-19843745)
chr7 (298-354)||(24240459-24240515)
chr7 (298-357)||(20296243-20296301)
chr7 (156-191)||(27585233-27585268)
chr7 (298-357)||(34914986-34915045)
chr7 (298-357)||(47346389-47346448)
chr7 (285-357)||(36092458-36092528)
chr7 (158-191)||(24240270-24240303)
chr7 (207-244)||(27585295-27585332)
chr7 (207-247)||(14991534-14991574)
chr7 (207-247)||(15421145-15421185)
[»] chr1 (24 HSPs)
chr1 (272-357)||(17294931-17295016)
chr1 (272-355)||(17294820-17294903)
chr1 (272-357)||(29228628-29228713)
chr1 (276-356)||(31411425-31411505)
chr1 (277-357)||(30604526-30604606)
chr1 (277-357)||(4187348-4187428)
chr1 (247-356)||(45858802-45858916)
chr1 (296-357)||(51722230-51722291)
chr1 (298-356)||(33562194-33562252)
chr1 (298-357)||(4187579-4187638)
chr1 (298-357)||(45443200-45443258)
chr1 (298-356)||(31411627-31411685)
chr1 (298-357)||(18585018-18585076)
chr1 (298-357)||(29228427-29228486)
chr1 (298-345)||(29383701-29383747)
chr1 (298-356)||(12287828-12287885)
chr1 (297-357)||(40521559-40521618)
chr1 (298-357)||(45858635-45858693)
chr1 (280-357)||(27957875-27957950)
chr1 (207-244)||(45443259-45443296)
chr1 (207-248)||(45858694-45858735)
chr1 (158-191)||(51722232-51722265)
chr1 (205-244)||(13356944-13356984)
chr1 (298-357)||(40642842-40642903)
[»] chr5 (19 HSPs)
chr5 (272-357)||(83876-83961)
chr5 (277-357)||(33040243-33040323)
chr5 (247-357)||(33040392-33040508)
chr5 (252-357)||(18541878-18541988)
chr5 (247-336)||(946811-946907)
chr5 (278-345)||(22196404-22196470)
chr5 (298-357)||(84100-84159)
chr5 (298-357)||(30329815-30329874)
chr5 (298-357)||(32395380-32395439)
chr5 (297-357)||(29396409-29396469)
chr5 (298-357)||(14769898-14769956)
chr5 (295-356)||(9850446-9850510)
chr5 (278-332)||(24792192-24792246)
chr5 (296-357)||(24792332-24792394)
chr5 (298-351)||(5095968-5096021)
chr5 (296-345)||(22196631-22196679)
chr5 (297-357)||(19439839-19439898)
chr5 (281-357)||(30330024-30330099)
chr5 (298-336)||(946722-946760)
[»] chr2 (23 HSPs)
chr2 (272-357)||(11349859-11349944)
chr2 (277-357)||(15961866-15961946)
chr2 (247-357)||(10861900-10862015)
chr2 (272-357)||(11350253-11350338)
chr2 (272-345)||(10862260-10862332)
chr2 (277-351)||(15962000-15962080)
chr2 (298-357)||(14280259-14280318)
chr2 (298-357)||(15962223-15962282)
chr2 (298-356)||(32810943-32811001)
chr2 (272-336)||(32197156-32197219)
chr2 (298-357)||(4506106-4506164)
chr2 (298-357)||(10862124-10862182)
chr2 (156-191)||(14280257-14280292)
chr2 (298-345)||(39420676-39420723)
chr2 (299-357)||(936792-936850)
chr2 (298-359)||(17326095-17326155)
chr2 (297-357)||(4342324-4342383)
chr2 (298-357)||(28193641-28193699)
chr2 (298-357)||(33532802-33532860)
chr2 (272-318)||(936992-937038)
chr2 (157-191)||(32810968-32811002)
chr2 (158-191)||(11349885-11349918)
chr2 (158-191)||(11350279-11350312)
[»] chr3 (19 HSPs)
chr3 (277-357)||(10450490-10450570)
chr3 (272-357)||(48511476-48511563)
chr3 (272-357)||(9180322-9180406)
chr3 (272-345)||(40769990-40770062)
chr3 (296-357)||(53966210-53966271)
chr3 (298-357)||(15820671-15820730)
chr3 (297-357)||(10450714-10450774)
chr3 (272-357)||(22666384-22666467)
chr3 (278-357)||(10453769-10453846)
chr3 (298-357)||(11244607-11244666)
chr3 (298-357)||(42190542-42190601)
chr3 (297-357)||(51734623-51734681)
chr3 (298-357)||(24453758-24453816)
chr3 (298-357)||(48837074-48837132)
chr3 (307-357)||(48511705-48511755)
chr3 (299-344)||(9179114-9179158)
chr3 (158-191)||(10450516-10450549)
chr3 (158-191)||(10450740-10450773)
chr3 (158-191)||(15820697-15820730)
[»] chr4 (13 HSPs)
chr4 (247-357)||(46528989-46529104)
chr4 (298-357)||(11290148-11290207)
chr4 (254-357)||(52810691-52810799)
chr4 (277-352)||(42901775-42901851)
chr4 (297-357)||(50868079-50868139)
chr4 (272-357)||(37288704-37288788)
chr4 (300-357)||(47845769-47845826)
chr4 (296-357)||(52810918-52810978)
chr4 (297-357)||(4026052-4026111)
chr4 (298-357)||(33912023-33912081)
chr4 (298-357)||(37097797-37097855)
chr4 (298-345)||(47846029-47846076)
chr4 (297-345)||(26941840-26941887)
[»] scaffold0012 (1 HSPs)
scaffold0012 (272-357)||(165738-165822)
[»] chr6 (7 HSPs)
chr6 (280-357)||(33396487-33396563)
chr6 (298-357)||(33396286-33396345)
chr6 (298-357)||(26842699-26842758)
chr6 (247-354)||(16193943-16194055)
chr6 (298-356)||(25183982-25184040)
chr6 (155-191)||(26842696-26842732)
chr6 (158-191)||(25183982-25184015)
[»] scaffold0785 (1 HSPs)
scaffold0785 (283-336)||(2983-3035)
[»] scaffold0166 (2 HSPs)
scaffold0166 (278-332)||(34575-34629)
scaffold0166 (296-357)||(34715-34777)


Alignment Details
Target: chr8 (Bit Score: 309; Significance: 1e-174; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 357
Target Start/End: Complemental strand, 20232819 - 20232463
Alignment:
Q  1 tctagcatctccttccacaacttccactactacgtcttttacctgatataaagaaaaagccagttcagatatattgaactttgattctgagaccatcaaa 100  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  20232819 tctagcatctccatccacaacttccactactacgtcttttacctgatataaagaaaaagctagttcagatatattgaactttgattctgagaccatcaaa 20232720  T
Q  101 aaatgaagtaaaatcaaataaatactgtaaataattacacgtcccagacgagcttattgttagcagccaacactcaggtgggatttagtccttatgatta 200  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||  || ||||||| ||||||||||||||||||||||||    
T  20232719 aaatgaagtaaaatcaaataaatactgtaaataattacacatcccagacgagcttattgttagtggctaacactcgggtgggatttagtccttatgatta 20232620  T
Q  201 atgaataagagtttataaaaaagaggcactcctaaccgtacaagtcgggcttgcatcgtccacgcttcagggggctgggctgaagcgtgagggtgtgtgt 300  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20232619 atgaataagagtttataaaagggaggcactcctaaccgtacaagtcgggcttgcatcgtccacgcttcagggggctgggctgaagcgtgagggtgtgtgt 20232520  T
Q  301 tagcggccaacactcgggtgagatttagtcccacattggatagatgggattcttgag 357  Q
    |||||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||    
T  20232519 tagcggccaacactcgggtgggatttagtcccacatcggatagatgagattcttgag 20232463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 277 - 356
Target Start/End: Complemental strand, 38287882 - 38287804
Alignment:
Q  277 gggctgaagcgtgagggtgtgtgttagcggccaacactcgggtgagatttagtcccacattggatagatgggattcttga 356  Q
    ||||||||||||||||| ||||||||| ||||||||||| |||| ||||||||||||||| |||||||| ||||||||||    
T  38287882 gggctgaagcgtgagggggtgtgttaggggccaacactc-ggtgggatttagtcccacatcggatagataggattcttga 38287804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 272 - 357
Target Start/End: Original strand, 8605444 - 8605528
Alignment:
Q  272 gggctgggctgaagcgtgagggtgtgtgttagcggccaacactcgggtgagatttagtcccacattggatagatgggattcttgag 357  Q
    |||| ||||||||||||||||| ||||||||||||||||||||| ||||| |||||||| ||| | ||||| || |||||||||||    
T  8605444 gggccgggctgaagcgtgagggggtgtgttagcggccaacactc-ggtgacatttagtctcacgtcggataaataggattcttgag 8605528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 279 - 355
Target Start/End: Complemental strand, 17607356 - 17607282
Alignment:
Q  279 gctgaagcgtgagggtgtgtgttagcggccaacactcgggtgagatttagtcccacattggatagatgggattcttg 355  Q
    ||||||||||||||| |||||||||||||||||||||| ||| ||||||||| ||||| |||||||| |||||||||    
T  17607356 gctgaagcgtgaggg-gtgtgttagcggccaacactcgagtg-gatttagtctcacatcggatagataggattcttg 17607282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 298 - 357
Target Start/End: Original strand, 18464049 - 18464108
Alignment:
Q  298 tgttagcggccaacactcgggtgagatttagtcccacattggatagatgggattcttgag 357  Q
    ||||||||||||||||||||||| |||||||||||||||  ||||||| |||||||||||    
T  18464049 tgttagcggccaacactcgggtgggatttagtcccacatcagatagataggattcttgag 18464108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 281 - 357
Target Start/End: Complemental strand, 9596134 - 9596059
Alignment:
Q  281 tgaagcgtgagggtgtgtgttagcggccaacactcgggtgagatttagtcccacattggatagatgggattcttgag 357  Q
    |||||| |||||  ||||||||||||||||||||||| || |||||||| |||||| |||||||| |||||||||||    
T  9596134 tgaagcatgaggaggtgtgttagcggccaacactcgg-tgggatttagttccacatcggatagataggattcttgag 9596059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 298 - 357
Target Start/End: Original strand, 14019787 - 14019846
Alignment:
Q  298 tgttagcggccaacactcgggtgagatttagtcccacattggatagatgggattcttgag 357  Q
    ||||||| ||||||||||||||| ||||||||||||||| |||||||| || ||||||||    
T  14019787 tgttagcagccaacactcgggtgggatttagtcccacatcggatagataggtttcttgag 14019846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 296 - 357
Target Start/End: Original strand, 15711474 - 15711534
Alignment:
Q  296 tgtgttagcggccaacactcgggtgagatttagtcccacattggatagatgggattcttgag 357  Q
    ||||||||| |||||||||||| || ||||||||||||||| |||||||| |||||||||||    
T  15711474 tgtgttagcagccaacactcgg-tgggatttagtcccacatcggatagataggattcttgag 15711534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 322 - 357
Target Start/End: Original strand, 8276552 - 8276587
Alignment:
Q  322 gatttagtcccacattggatagatgggattcttgag 357  Q
    |||||||||||||||||||||||| |||||||||||    
T  8276552 gatttagtcccacattggatagataggattcttgag 8276587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 298 - 357
Target Start/End: Original strand, 35908658 - 35908716
Alignment:
Q  298 tgttagcggccaacactcgggtgagatttagtcccacattggatagatgggattcttgag 357  Q
    |||||||||||||||||||| || ||||||||||||||| || ||||| |||| ||||||    
T  35908658 tgttagcggccaacactcgg-tgggatttagtcccacatcgggtagataggatacttgag 35908716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 278 - 353
Target Start/End: Complemental strand, 39588001 - 39587928
Alignment:
Q  278 ggctgaagcgtgagggtgtgtgttagcggccaacactcgggtgagatttagtcccacattggatagatgggattct 353  Q
    |||||||||||||||| |||||||||| ||||||||||  ||| |||||||||||||||  ||| ||| |||||||    
T  39588001 ggctgaagcgtgagggggtgtgttagcagccaacactc-agtg-gatttagtcccacatcagatggataggattct 39587928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 191
Target Start/End: Original strand, 14019786 - 14019820
Alignment:
Q  157 ttgttagcagccaacactcaggtgggatttagtcc 191  Q
    ||||||||||||||||||| |||||||||||||||    
T  14019786 ttgttagcagccaacactcgggtgggatttagtcc 14019820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 309; Significance: 1e-174; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 357
Target Start/End: Complemental strand, 44314726 - 44314370
Alignment:
Q  1 tctagcatctccttccacaacttccactactacgtcttttacctgatataaagaaaaagccagttcagatatattgaactttgattctgagaccatcaaa 100  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  44314726 tctagcatctccatccacaacttccactactacgtcttttacctgatataaagaaaaagctagttcagatatattgaactttgattctgagaccatcaaa 44314627  T
Q  101 aaatgaagtaaaatcaaataaatactgtaaataattacacgtcccagacgagcttattgttagcagccaacactcaggtgggatttagtccttatgatta 200  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||  || ||||||| ||||||||||||||||||||||||    
T  44314626 aaatgaagtaaaatcaaataaatactgtaaataattacacatcccagacgagcttattgttagtggctaacactcgggtgggatttagtccttatgatta 44314527  T
Q  201 atgaataagagtttataaaaaagaggcactcctaaccgtacaagtcgggcttgcatcgtccacgcttcagggggctgggctgaagcgtgagggtgtgtgt 300  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44314526 atgaataagagtttataaaagggaggcactcctaaccgtacaagtcgggcttgcatcgtccacgcttcagggggctgggctgaagcgtgagggtgtgtgt 44314427  T
Q  301 tagcggccaacactcgggtgagatttagtcccacattggatagatgggattcttgag 357  Q
    |||||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||    
T  44314426 tagcggccaacactcgggtgggatttagtcccacatcggatagatgagattcttgag 44314370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 253 - 357
Target Start/End: Complemental strand, 36270645 - 36270536
Alignment:
Q  253 gcatcgtccacgcttcagg------gggctgggctgaagcgtgagggtgtgtgttagcggccaacactcgggtgagatttagtcccacattggatagatg 346  Q
    |||||||||||||||||||      |||| |||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||| ||||||||     
T  36270645 gcatcgtccacgcttcaggcccattgggccgggctgaagcgtgagggtgtgtgttagcggtcaacactc-ggtgggatttagtcccacatcggatagata 36270547  T
Q  347 ggattcttgag 357  Q
    |||||||||||    
T  36270546 ggattcttgag 36270536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 272 - 357
Target Start/End: Complemental strand, 37756089 - 37756004
Alignment:
Q  272 gggctgggctgaagcgtgagggtgtgtgttagcggccaacactcgggtgagatttagtcccacattggatagatgggattcttgag 357  Q
    |||| ||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||| |||||||| ||| |||||||    
T  37756089 gggccgggctgaagcgtgagggggtgtgttagcggccaactctcgggtgggatttagtcccacatcggatagataggaatcttgag 37756004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 277 - 357
Target Start/End: Complemental strand, 47346240 - 47346160
Alignment:
Q  277 gggctgaagcgtgagggtgtgtgttagcggccaacactcgggtgagatttagtcccacattggatagatgggattcttgag 357  Q
    ||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||  ||||||| ||| |||||||    
T  47346240 gggctgaagcgtgagggggtgtgttagcggccaactctcgggtgggatttagtcccacatcagatagataggaatcttgag 47346160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 247 - 357
Target Start/End: Original strand, 36495813 - 36495927
Alignment:
Q  247 gggcttgcatcgtccacgcttcagg------gggctgggctgaagcgtgagggtgtgtgttagcggccaacactcgggtgagatttagtcccacattgga 340  Q
    |||||||||||||||| ||||||||      ||||  |||||||||||| ||||||  ||||||||||||| |||||||| ||||||||||||||| |||    
T  36495813 gggcttgcatcgtccatgcttcaggcccattgggccaggctgaagcgtgggggtgt--gttagcggccaactctcgggtgggatttagtcccacatcgga 36495910  T
Q  341 tagatgggattcttgag 357  Q
    ||||| |||||||||||    
T  36495911 tagataggattcttgag 36495927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 277 - 357
Target Start/End: Complemental strand, 24240324 - 24240244
Alignment:
Q  277 gggctgaagcgtgagggtgtgtgttagcggccaacactcgggtgagatttagtcccacattggatagatgggattcttgag 357  Q
    ||||||||||||||||| |||||||||| |||||| ||| |||| ||||||||||||||| |||||||| ||| |||||||    
T  24240324 gggctgaagcgtgagggggtgtgttagcagccaactctcaggtgggatttagtcccacatcggatagataggaatcttgag 24240244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 298 - 357
Target Start/End: Original strand, 34748757 - 34748816
Alignment:
Q  298 tgttagcggccaacactcgggtgagatttagtcccacattggatagatgggattcttgag 357  Q
    ||||||||||||||||||||||| ||||||||||||||| |||||||| |||||||||||    
T  34748757 tgttagcggccaacactcgggtgggatttagtcccacatcggatagataggattcttgag 34748816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 298 - 356
Target Start/End: Complemental strand, 36270822 - 36270764
Alignment:
Q  298 tgttagcggccaacactcgggtgagatttagtcccacattggatagatgggattcttga 356  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||    
T  36270822 tgttagcggccaacactcgggtgggattttgtcccacattggatagataggattcttga 36270764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 296 - 357
Target Start/End: Original strand, 33909114 - 33909175
Alignment:
Q  296 tgtgttagcggccaacactcgggtgagatttagtcccacattggatagatgggattcttgag 357  Q
    ||||||| |||||||| |||||||| ||||||||||||||| |||||||| |||||||||||    
T  33909114 tgtgttaacggccaactctcgggtgggatttagtcccacatcggatagataggattcttgag 33909175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 296 - 357
Target Start/End: Complemental strand, 39550104 - 39550044
Alignment:
Q  296 tgtgttagcggccaacactcgggtgagatttagtcccacattggatagatgggattcttgag 357  Q
    |||||||||||||||||||||| || ||||||||||||||| |||||||| |||||||||||    
T  39550104 tgtgttagcggccaacactcgg-tgggatttagtcccacatcggatagataggattcttgag 39550044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 298 - 357
Target Start/End: Original strand, 27585235 - 27585294
Alignment:
Q  298 tgttagcggccaacactcgggtgagatttagtcccacattggatagatgggattcttgag 357  Q
    ||||||| |||||||||| |||| ||||||||||||||| |||||||| |||||||||||    
T  27585235 tgttagcagccaacactcaggtgggatttagtcccacatcggatagataggattcttgag 27585294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 298 - 357
Target Start/End: Original strand, 36495645 - 36495704
Alignment:
Q  298 tgttagcggccaacactcgggtgagatttagtcccacattggatagatgggattcttgag 357  Q
    |||||||||||||| ||||||||  |||||||||||||| |||||||| |||||||||||    
T  36495645 tgttagcggccaactctcgggtggcatttagtcccacatcggatagataggattcttgag 36495704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 298 - 357
Target Start/End: Complemental strand, 37756289 - 37756230
Alignment:
Q  298 tgttagcggccaacactcgggtgagatttagtcccacattggatagatgggattcttgag 357  Q
    |||||||||||||| |||||||| ||||||||||||||| |||||||| ||| |||||||    
T  37756289 tgttagcggccaactctcgggtgggatttagtcccacatcggatagataggaatcttgag 37756230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 298 - 357
Target Start/End: Complemental strand, 37762037 - 37761978
Alignment:
Q  298 tgttagcggccaacactcgggtgagatttagtcccacattggatagatgggattcttgag 357  Q
    |||||||||||||| |||||||| ||||||||||||||| |||||||| ||| |||||||    
T  37762037 tgttagcggccaactctcgggtgggatttagtcccacatcggatagataggaatcttgag 37761978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 277 - 357
Target Start/End: Original strand, 19843666 - 19843745
Alignment:
Q  277 gggctgaagcgtgagggtgtgtgttagcggccaacactcgggtgagatttagtcccacattggatagatgggattcttgag 357  Q
    ||||||||||||||| | ||||||||||||||||||||| |  | |||||||||||| ||  ||||||| |||||||||||    
T  19843666 gggctgaagcgtgagcgagtgtgttagcggccaacactc-gaagggatttagtcccaaatcagatagataggattcttgag 19843745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 298 - 354
Target Start/End: Complemental strand, 24240515 - 24240459
Alignment:
Q  298 tgttagcggccaacactcgggtgagatttagtcccacattggatagatgggattctt 354  Q
    |||||||||||||| |||||||| ||||||||||||||| |||||||| ||| ||||    
T  24240515 tgttagcggccaactctcgggtgggatttagtcccacatcggatagataggaatctt 24240459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 298 - 357
Target Start/End: Original strand, 20296243 - 20296301
Alignment:
Q  298 tgttagcggccaacactcgggtgagatttagtcccacattggatagatgggattcttgag 357  Q
    ||||||||||||||||||| | | |||||||||||||||||||||||  |||||||||||    
T  20296243 tgttagcggccaacactcgaggg-gatttagtcccacattggatagagaggattcttgag 20296301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 156 - 191
Target Start/End: Original strand, 27585233 - 27585268
Alignment:
Q  156 attgttagcagccaacactcaggtgggatttagtcc 191  Q
    ||||||||||||||||||||||||||||||||||||    
T  27585233 attgttagcagccaacactcaggtgggatttagtcc 27585268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 298 - 357
Target Start/End: Complemental strand, 34915045 - 34914986
Alignment:
Q  298 tgttagcggccaacactcgggtgagatttagtcccacattggatagatgggattcttgag 357  Q
    ||||||| |||| |||||||||| ||||||||||||||| |||||||  |||||||||||    
T  34915045 tgttagcagccagcactcgggtgggatttagtcccacatcggatagacaggattcttgag 34914986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 298 - 357
Target Start/End: Complemental strand, 47346448 - 47346389
Alignment:
Q  298 tgttagcggccaacactcgggtgagatttagtcccacattggatagatgggattcttgag 357  Q
    |||||||||||||| |||||||| ||||||||||||||| ||| |||| ||| |||||||    
T  47346448 tgttagcggccaactctcgggtgggatttagtcccacatcggaaagataggaatcttgag 47346389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 285 - 357
Target Start/End: Complemental strand, 36092528 - 36092458
Alignment:
Q  285 gcgtgagggtgtgtgttagcggccaacactcgggtgagatttagtcccacattggatagatgggattcttgag 357  Q
    ||||||||| ||||||||||  ||||||||| | || ||||||||||||||||||||||||  ||||||||||    
T  36092528 gcgtgagggggtgtgttagcaaccaacactcag-tg-gatttagtcccacattggatagatatgattcttgag 36092458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 191
Target Start/End: Complemental strand, 24240303 - 24240270
Alignment:
Q  158 tgttagcagccaacactcaggtgggatttagtcc 191  Q
    |||||||||||||| |||||||||||||||||||    
T  24240303 tgttagcagccaactctcaggtgggatttagtcc 24240270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 244
Target Start/End: Original strand, 27585295 - 27585332
Alignment:
Q  207 aagagtttataaaaaagaggcactcctaaccgtacaag 244  Q
    ||||||||||||||| ||||||||||| ||||||||||    
T  27585295 aagagtttataaaaaggaggcactcctcaccgtacaag 27585332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 247
Target Start/End: Complemental strand, 14991574 - 14991534
Alignment:
Q  207 aagagtttataaaaaagaggcactcctaaccgtacaagtcg 247  Q
    ||||||||||||| | ||||||||||| |||||||||||||    
T  14991574 aagagtttataaagaggaggcactcctcaccgtacaagtcg 14991534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 247
Target Start/End: Complemental strand, 15421185 - 15421145
Alignment:
Q  207 aagagtttataaaaaagaggcactcctaaccgtacaagtcg 247  Q
    ||||||||||||| | ||||||||||| |||||||||||||    
T  15421185 aagagtttataaagaggaggcactcctcaccgtacaagtcg 15421145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 4e-29; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 272 - 357
Target Start/End: Original strand, 17294931 - 17295016
Alignment:
Q  272 gggctgggctgaagcgtgagggtgtgtgttagcggccaacactcgggtgagatttagtcccacattggatagatgggattcttgag 357  Q
    |||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||||| |||||||||||    
T  17294931 gggctgggctaaagcgtgagggggtgtgttagcggccaacactcgggtgggatttagtcccacatcggatagataggattcttgag 17295016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 272 - 355
Target Start/End: Original strand, 17294820 - 17294903
Alignment:
Q  272 gggctgggctgaagcgtgagggtgtgtgttagcggccaacactcgggtgagatttagtcccacattggatagatgggattcttg 355  Q
    |||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||||| |||||||||    
T  17294820 gggctgggctaaagcgtgagggggtgtgttagcggccaacactcgggtgggatttagtcccacatcggatagataggattcttg 17294903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 272 - 357
Target Start/End: Original strand, 29228628 - 29228713
Alignment:
Q  272 gggctgggctgaagcgtgagggtgtgtgttagcggccaacactcgggtgagatttagtcccacattggatagatgggattcttgag 357  Q
    |||| ||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||| |||||||| ||| |||||||    
T  29228628 gggccgggctgaagcgtgagggggtgtgttagcggccaactctcgggtgggatttagtcccacatcggatagataggaatcttgag 29228713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 276 - 356
Target Start/End: Complemental strand, 31411505 - 31411425
Alignment:
Q  276 tgggctgaagcgtgagggtgtgtgttagcggccaacactcgggtgagatttagtcccacattggatagatgggattcttga 356  Q
    |||||||||||||||||| ||||||||||| |||||||||||||| ||||||||| ||||| |||||||| ||||||||||    
T  31411505 tgggctgaagcgtgagggggtgtgttagcgaccaacactcgggtgggatttagtctcacatcggatagataggattcttga 31411425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 277 - 357
Target Start/End: Complemental strand, 30604606 - 30604526
Alignment:
Q  277 gggctgaagcgtgagggtgtgtgttagcggccaacactcgggtgagatttagtcccacattggatagatgggattcttgag 357  Q
    ||||||||||||||||| |||||||||||| |||| |||||||| ||||||||||||||| |||||||| ||| |||||||    
T  30604606 gggctgaagcgtgagggggtgtgttagcggtcaactctcgggtgggatttagtcccacatcggatagataggaatcttgag 30604526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 277 - 357
Target Start/End: Complemental strand, 4187428 - 4187348
Alignment:
Q  277 gggctgaagcgtgagggtgtgtgttagcggccaacactcgggtgagatttagtcccacattggatagatgggattcttgag 357  Q
    ||||||||| ||||||| ||||||||||||||||| |||| ||| ||||||||||||||| |||||||| ||| |||||||    
T  4187428 gggctgaagtgtgagggggtgtgttagcggccaactctcgagtgggatttagtcccacatcggatagataggaatcttgag 4187348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 247 - 356
Target Start/End: Original strand, 45858802 - 45858916
Alignment:
Q  247 gggcttgcatcgtccacgcttcagg------gggctgggctgaagcgtgagggtgtgtgttagcggccaacactcgggtgagatttagtcccacattgga 340  Q
    |||||||||||||||||| ||||||      |||| ||||||||||||||| | |||||||||||||||||||||| | | ||||||||| ||||| |||    
T  45858802 gggcttgcatcgtccacgtttcaggcccattgggccgggctgaagcgtgagagggtgtgttagcggccaacactcgag-gggatttagtctcacatcgga 45858900  T
Q  341 tagatgggattcttga 356  Q
    ||||| ||||||||||    
T  45858901 tagataggattcttga 45858916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 296 - 357
Target Start/End: Original strand, 51722230 - 51722291
Alignment:
Q  296 tgtgttagcggccaacactcgggtgagatttagtcccacattggatagatgggattcttgag 357  Q
    ||||||||| ||||||||||||||| ||||||||||||||| |||||||| |||||||||||    
T  51722230 tgtgttagcagccaacactcgggtgggatttagtcccacatcggatagataggattcttgag 51722291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 298 - 356
Target Start/End: Complemental strand, 33562252 - 33562194
Alignment:
Q  298 tgttagcggccaacactcgggtgagatttagtcccacattggatagatgggattcttga 356  Q
    ||||||||||||||||||||||| | ||||||||||||| |||||||| ||||||||||    
T  33562252 tgttagcggccaacactcgggtgggttttagtcccacatcggatagataggattcttga 33562194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 298 - 357
Target Start/End: Complemental strand, 4187638 - 4187579
Alignment:
Q  298 tgttagcggccaacactcgggtgagatttagtcccacattggatagatgggattcttgag 357  Q
    |||||||||||||| |||||||| ||||||||||||||| |||||||| ||| |||||||    
T  4187638 tgttagcggccaactctcgggtgggatttagtcccacatcggatagataggaatcttgag 4187579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 298 - 357
Target Start/End: Original strand, 45443200 - 45443258
Alignment:
Q  298 tgttagcggccaacactcgggtgagatttagtcccacattggatagatgggattcttgag 357  Q
    |||||||||||||||||||| || ||||||||||||||| |||||||| |||||||||||    
T  45443200 tgttagcggccaacactcgg-tgggatttagtcccacatcggatagataggattcttgag 45443258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 298 - 356
Target Start/End: Complemental strand, 31411685 - 31411627
Alignment:
Q  298 tgttagcggccaacactcgggtgagatttagtcccacattggatagatgggattcttga 356  Q
    |||||| |||||||||||||||| |||||||||||||||  ||||||| ||||||||||    
T  31411685 tgttagtggccaacactcgggtgggatttagtcccacatcagatagataggattcttga 31411627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 298 - 357
Target Start/End: Original strand, 18585018 - 18585076
Alignment:
Q  298 tgttagcggccaacactcgggtgagatttagtcccacattggatagatgggattcttgag 357  Q
    ||||||| |||||||||||| || ||||||||||||||| |||||||| |||||||||||    
T  18585018 tgttagcagccaacactcgg-tgggatttagtcccacatcggatagataggattcttgag 18585076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 298 - 357
Target Start/End: Original strand, 29228427 - 29228486
Alignment:
Q  298 tgttagcggccaacactcgggtgagatttagtcccacattggatagatgggattcttgag 357  Q
    |||||||||||||| |||||||| ||||||| ||||||| |||||||| ||| |||||||    
T  29228427 tgttagcggccaactctcgggtgggatttagacccacatcggatagataggaatcttgag 29228486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 298 - 345
Target Start/End: Complemental strand, 29383747 - 29383701
Alignment:
Q  298 tgttagcggccaacactcgggtgagatttagtcccacattggatagat 345  Q
    ||||||||||||||||||||||| ||||||||||||||| ||||||||    
T  29383747 tgttagcggccaacactcgggtg-gatttagtcccacatcggatagat 29383701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 298 - 356
Target Start/End: Original strand, 12287828 - 12287885
Alignment:
Q  298 tgttagcggccaacactcgggtgagatttagtcccacattggatagatgggattcttga 356  Q
    |||||| ||||||||||||| || ||||||||||||||| |||||||| ||||||||||    
T  12287828 tgttagtggccaacactcgg-tgggatttagtcccacatcggatagataggattcttga 12287885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 297 - 357
Target Start/End: Complemental strand, 40521618 - 40521559
Alignment:
Q  297 gtgttagcggccaacactcgggtgagatttagtcccacattggatagatgggattcttgag 357  Q
    |||||||||||||||||||| | | ||||||||||||||| ||||||||  ||||||||||    
T  40521618 gtgttagcggccaacactcgag-gtgatttagtcccacatcggatagataagattcttgag 40521559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 298 - 357
Target Start/End: Original strand, 45858635 - 45858693
Alignment:
Q  298 tgttagcggccaacactcgggtgagatttagtcccacattggatagatgggattcttgag 357  Q
    ||||||||||||||||||  | | ||||||||||||||| |||||||| |||||||||||    
T  45858635 tgttagcggccaacactcatggg-gatttagtcccacatcggatagataggattcttgag 45858693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 357
Target Start/End: Complemental strand, 27957950 - 27957875
Alignment:
Q  280 ctgaagcgtgagggtgtgtgttagcggccaacactcgggtgagatttagtcccacattggatagatgggattcttgag 357  Q
    |||||||||||||| |||| |||| |||||||||| ||  | ||||||||||| |||  |||||||||||||||||||    
T  27957950 ctgaagcgtgagggggtgt-ttagtggccaacacttggagg-gatttagtcccgcatctgatagatgggattcttgag 27957875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 244
Target Start/End: Original strand, 45443259 - 45443296
Alignment:
Q  207 aagagtttataaaaaagaggcactcctaaccgtacaag 244  Q
    ||||||||||||| | ||||||||||||||||||||||    
T  45443259 aagagtttataaagatgaggcactcctaaccgtacaag 45443296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 248
Target Start/End: Original strand, 45858694 - 45858735
Alignment:
Q  207 aagagtttataaaaaagaggcactcctaaccgtacaagtcgg 248  Q
    ||||||||||||| | ||||||||||| ||||||||||||||    
T  45858694 aagagtttataaagaggaggcactcctcaccgtacaagtcgg 45858735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 191
Target Start/End: Original strand, 51722232 - 51722265
Alignment:
Q  158 tgttagcagccaacactcaggtgggatttagtcc 191  Q
    |||||||||||||||||| |||||||||||||||    
T  51722232 tgttagcagccaacactcgggtgggatttagtcc 51722265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 205 - 244
Target Start/End: Complemental strand, 13356984 - 13356944
Alignment:
Q  205 ataagagtttataaaaaag-aggcactcctaaccgtacaag 244  Q
    ||||||||||||||||||| |||||||||||||| ||||||    
T  13356984 ataagagtttataaaaaaggaggcactcctaaccttacaag 13356944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 357
Target Start/End: Complemental strand, 40642903 - 40642842
Alignment:
Q  298 tgttagcggccaacactc---gggtgagatttagtcccacattggatagatgggattcttgag 357  Q
    ||||||| ||||||||||   ||||| ||||||||||||||| |||||||| |||||||||||    
T  40642903 tgttagcagccaacactcaatgggtg-gatttagtcccacatcggatagataggattcttgag 40642842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 272 - 357
Target Start/End: Complemental strand, 83961 - 83876
Alignment:
Q  272 gggctgggctgaagcgtgagggtgtgtgttagcggccaacactcgggtgagatttagtcccacattggatagatgggattcttgag 357  Q
    |||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||| ||||| || |||||||||||    
T  83961 gggctgggctgaagcgtgagggggggtgttagcggccaacactcgggtgggatttagtcccacatcggatatataggattcttgag 83876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 277 - 357
Target Start/End: Original strand, 33040243 - 33040323
Alignment:
Q  277 gggctgaagcgtgagggtgtgtgttagcggccaacactcgggtgagatttagtcccacattggatagatgggattcttgag 357  Q
    ||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||| |||||||| |||||||||||    
T  33040243 gggctgaagcgtgagggggtgtgttagcggccaacactcgcgtgggatttagtcccacatcggatagataggattcttgag 33040323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 247 - 357
Target Start/End: Original strand, 33040392 - 33040508
Alignment:
Q  247 gggcttgcatcgtccacgcttcaggg------ggctgggctgaagcgtgagggtgtgtgttagcggccaacactcgggtgagatttagtcccacattgga 340  Q
    |||||||||||||||||||||||||       ||| ||||||||||||||||  |||||||||||||||||||||| ||| |||||||||||||||  ||    
T  33040392 gggcttgcatcgtccacgcttcaggcccattcggccgggctgaagcgtgaggaggtgtgttagcggccaacactcgcgtgggatttagtcccacatcaga 33040491  T
Q  341 tagatgggattcttgag 357  Q
    ||||| |||||||||||    
T  33040492 tagataggattcttgag 33040508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 252 - 357
Target Start/End: Original strand, 18541878 - 18541988
Alignment:
Q  252 tgcatcgtccacgcttcagg------gggctgggctgaagcgtgagggtgtgtgttagcggccaacactcgggtgagatttagtcccacattggatagat 345  Q
    ||||||||||||||||||||      |||| ||||||||||||||||| | ||||||||||||||||||  |||| ||||||||| ||||| ||||||||    
T  18541878 tgcatcgtccacgcttcaggcccattgggccgggctgaagcgtgagggggggtgttagcggccaacact-tggtgggatttagtctcacatcggatagat 18541976  T
Q  346 gggattcttgag 357  Q
     |||||||||||    
T  18541977 aggattcttgag 18541988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 247 - 336
Target Start/End: Original strand, 946811 - 946907
Alignment:
Q  247 gggcttgcatcgtccacgcttcagg-------gggctgggctgaagcgtgagggtgtgtgttagcggccaacactcgggtgagatttagtcccacat 336  Q
    |||||||||||||||||||||||||       || | |||||||||| |||||| ||||||||||||||||| |||||||| |||||||||||||||    
T  946811 gggcttgcatcgtccacgcttcaggctcgttgggaccgggctgaagcatgagggggtgtgttagcggccaactctcgggtgggatttagtcccacat 946907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 278 - 345
Target Start/End: Complemental strand, 22196470 - 22196404
Alignment:
Q  278 ggctgaagcgtgagggtgtgtgttagcggccaacactcgggtgagatttagtcccacattggatagat 345  Q
    |||||||||||||||| |||| |||||||||||||||| |||| ||||||||||||||| ||||||||    
T  22196470 ggctgaagcgtgagggggtgttttagcggccaacactc-ggtgggatttagtcccacatcggatagat 22196404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 298 - 357
Target Start/End: Complemental strand, 84159 - 84100
Alignment:
Q  298 tgttagcggccaacactcgggtgagatttagtcccacattggatagatgggattcttgag 357  Q
    |||||| |||||||||||||||| ||||||||||||||| ||||| || |||||||||||    
T  84159 tgttagtggccaacactcgggtgggatttagtcccacatcggatatataggattcttgag 84100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 298 - 357
Target Start/End: Original strand, 30329815 - 30329874
Alignment:
Q  298 tgttagcggccaacactcgggtgagatttagtcccacattggatagatgggattcttgag 357  Q
    |||||||||||||| |||||| | ||||||||||||||| |||||||| |||||||||||    
T  30329815 tgttagcggccaactctcgggagggatttagtcccacatcggatagataggattcttgag 30329874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 298 - 357
Target Start/End: Complemental strand, 32395439 - 32395380
Alignment:
Q  298 tgttagcggccaacactcgggtgagatttagtcccacattggatagatgggattcttgag 357  Q
    |||||||||||||| |||||||| ||||||||||||||| |||||||| ||| |||||||    
T  32395439 tgttagcggccaactctcgggtgggatttagtcccacatcggatagataggaatcttgag 32395380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 297 - 357
Target Start/End: Complemental strand, 29396469 - 29396409
Alignment:
Q  297 gtgttagcggccaacactcgggtgagatttagtcccacattggatagatgggattcttgag 357  Q
    ||||||||||||||| |||||||| |||||||||||||||  ||||||| ||| |||||||    
T  29396469 gtgttagcggccaactctcgggtgggatttagtcccacatcagatagataggaatcttgag 29396409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 298 - 357
Target Start/End: Complemental strand, 14769956 - 14769898
Alignment:
Q  298 tgttagcggccaacactcgggtgagatttagtcccacattggatagatgggattcttgag 357  Q
    ||||||||||||||||||| ||| ||||||||| ||||| |||||||| |||||||||||    
T  14769956 tgttagcggccaacactcgagtg-gatttagtctcacatcggatagataggattcttgag 14769898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 295 - 356
Target Start/End: Original strand, 9850446 - 9850510
Alignment:
Q  295 gtgtgttagcggccaacactcgggtgag---atttagtcccacattggatagatgggattcttga 356  Q
    |||||||||| ||||||||||||||| |   ||||| ||||||||||||||||| ||||||||||    
T  9850446 gtgtgttagcagccaacactcgggtgggtggatttattcccacattggatagataggattcttga 9850510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 278 - 332
Target Start/End: Complemental strand, 24792246 - 24792192
Alignment:
Q  278 ggctgaagcgtgagggtgtgtgttagcggccaacactcgggtgagatttagtccc 332  Q
    |||||||||||||||| |||||||| |||||||| ||| |||||||||| |||||    
T  24792246 ggctgaagcgtgagggggtgtgttaacggccaactctcaggtgagattttgtccc 24792192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 296 - 357
Target Start/End: Complemental strand, 24792394 - 24792332
Alignment:
Q  296 tgtgttagcggccaacactcggg-tgagatttagtcccacattggatagatgggattcttgag 357  Q
    |||||||||||||||| |||||| ||||||||||||||| || |||||||| ||| |||||||    
T  24792394 tgtgttagcggccaactctcggggtgagatttagtcccatatcggatagataggaatcttgag 24792332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 298 - 351
Target Start/End: Complemental strand, 5096021 - 5095968
Alignment:
Q  298 tgttagcggccaacactcgggtgagatttagtcccacattggatagatgggatt 351  Q
    ||||||||| ||||||||||||| |||||| |||||||| |||||||| |||||    
T  5096021 tgttagcggtcaacactcgggtgggatttactcccacatcggatagataggatt 5095968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 296 - 345
Target Start/End: Complemental strand, 22196679 - 22196631
Alignment:
Q  296 tgtgttagcggccaacactcgggtgagatttagtcccacattggatagat 345  Q
    |||||||||||||||||||| |||| ||||||||||||||| ||||||||    
T  22196679 tgtgttagcggccaacactc-ggtgggatttagtcccacatcggatagat 22196631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 297 - 357
Target Start/End: Original strand, 19439839 - 19439898
Alignment:
Q  297 gtgttagcggccaacactcgggtgagatttagtcccacattggatagatgggattcttgag 357  Q
    |||||||||||||||||||| | | |||||||||||||||  ||||||| |||||||||||    
T  19439839 gtgttagcggccaacactcgaggg-gatttagtcccacatcagatagataggattcttgag 19439898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 357
Target Start/End: Original strand, 30330024 - 30330099
Alignment:
Q  281 tgaagcgtgagggtgtgtgttagcggccaacactcgggtgagatttagtcccacattggatagatgggattcttgag 357  Q
    ||||| ||||||| ||||||||| |||||||||| | | | ||||||||||||||||| ||||||  ||||||||||    
T  30330024 tgaagtgtgagggggtgtgttagaggccaacacttgag-gcgatttagtcccacattgaatagatatgattcttgag 30330099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 298 - 336
Target Start/End: Original strand, 946722 - 946760
Alignment:
Q  298 tgttagcggccaacactcgggtgagatttagtcccacat 336  Q
    |||||||||||||| |||||||| |||||||||||||||    
T  946722 tgttagcggccaactctcgggtgggatttagtcccacat 946760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 3e-24; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 272 - 357
Target Start/End: Complemental strand, 11349944 - 11349859
Alignment:
Q  272 gggctgggctgaagcgtgagggtgtgtgttagcggccaacactcgggtgagatttagtcccacattggatagatgggattcttgag 357  Q
    ||||||||| |||||||||||| |||||||||| ||||||||||||||| ||||||||||||||| |||||||| || ||||||||    
T  11349944 gggctgggccgaagcgtgagggggtgtgttagcagccaacactcgggtgggatttagtcccacatcggatagataggtttcttgag 11349859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 277 - 357
Target Start/End: Complemental strand, 15961946 - 15961866
Alignment:
Q  277 gggctgaagcgtgagggtgtgtgttagcggccaacactcgggtgagatttagtcccacattggatagatgggattcttgag 357  Q
    ||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||| |||||||| ||| |||||||    
T  15961946 gggctgaagcgtgagggggtgtgttagcggccaactctcgggtgggatttagtcccacatcggatagataggaatcttgag 15961866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 247 - 357
Target Start/End: Complemental strand, 10862015 - 10861900
Alignment:
Q  247 gggcttgcatcgtccacgcttcagg------gggctgggctgaagcgtgagggtgtgtgttagcggccaacactcgggtgagatttagtcccacattgga 340  Q
    |||||||||||||||||||||||||      |||  ||||||||||||||||| |||||||||||||||||||||| | | |||||||||||| ||||||    
T  10862015 gggcttgcatcgtccacgcttcaggcccattgggtcgggctgaagcgtgagggggtgtgttagcggccaacactcgag-gggatttagtcccatattgga 10861917  T
Q  341 tagatgggattcttgag 357  Q
    || || |||||||||||    
T  10861916 tatataggattcttgag 10861900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 272 - 357
Target Start/End: Complemental strand, 11350338 - 11350253
Alignment:
Q  272 gggctgggctgaagcgtgagggtgtgtgttagcggccaacactcgggtgagatttagtcccacattggatagatgggattcttgag 357  Q
    ||||||||||||||||||| || | |||||||| ||||||||||||||| |||||||||||| || |||||||| || ||||||||    
T  11350338 gggctgggctgaagcgtgacggggggtgttagcagccaacactcgggtgggatttagtcccatatcggatagataggtttcttgag 11350253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 272 - 345
Target Start/End: Original strand, 10862260 - 10862332
Alignment:
Q  272 gggctgggctgaagcgtgagggtgtgtgttagcggccaacactcgggtgagatttagtcccacattggatagat 345  Q
    |||| |||||||||||| |||| |||||||||||||||||||||| | | ||||||||||||||| ||||||||    
T  10862260 gggccgggctgaagcgtaagggggtgtgttagcggccaacactcgag-gggatttagtcccacatcggatagat 10862332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 277 - 351
Target Start/End: Complemental strand, 15962080 - 15962000
Alignment:
Q  277 gggctgaagcgtgagggtgtgtgttag------cggccaacactcgggtgagatttagtcccacattggatagatgggatt 351  Q
    ||||||||||||||||| |||||||||      |||||||| |||||||| |||||||||||||||||||||||| |||||    
T  15962080 gggctgaagcgtgagggggtgtgttagacttagcggccaactctcgggtgggatttagtcccacattggatagataggatt 15962000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 298 - 357
Target Start/End: Original strand, 14280259 - 14280318
Alignment:
Q  298 tgttagcggccaacactcgggtgagatttagtcccacattggatagatgggattcttgag 357  Q
    ||||||| |||||||||| |||| |||||||||||||||||||||||| |||||| ||||    
T  14280259 tgttagcagccaacactcaggtgggatttagtcccacattggatagataggattcatgag 14280318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 298 - 357
Target Start/End: Complemental strand, 15962282 - 15962223
Alignment:
Q  298 tgttagcggccaacactcgggtgagatttagtcccacattggatagatgggattcttgag 357  Q
    |||||||||||||| |||||||| ||||||||||||||| |||||||| ||| |||||||    
T  15962282 tgttagcggccaactctcgggtgggatttagtcccacatcggatagataggaatcttgag 15962223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 298 - 356
Target Start/End: Complemental strand, 32811001 - 32810943
Alignment:
Q  298 tgttagcggccaacactcgggtgagatttagtcccacattggatagatgggattcttga 356  Q
    ||||||| ||||||||||||||| ||||||||||| ||| |||||||| ||||||||||    
T  32811001 tgttagcagccaacactcgggtgggatttagtcccgcatcggatagataggattcttga 32810943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 272 - 336
Target Start/End: Original strand, 32197156 - 32197219
Alignment:
Q  272 gggctgggctgaagcgtgagggtgtgtgttagcggccaacactcgggtgagatttagtcccacat 336  Q
    |||| ||||||||||||||||| || |||||||||||||||||| | || |||||||||||||||    
T  32197156 gggccgggctgaagcgtgagggggtatgttagcggccaacactc-gatgggatttagtcccacat 32197219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 298 - 357
Target Start/End: Complemental strand, 4506164 - 4506106
Alignment:
Q  298 tgttagcggccaacactcgggtgagatttagtcccacattggatagatgggattcttgag 357  Q
    ||||||| |||||||||||| || ||||||||||||||| |||||||| |||||||||||    
T  4506164 tgttagctgccaacactcgg-tgggatttagtcccacatcggatagataggattcttgag 4506106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 298 - 357
Target Start/End: Complemental strand, 10862182 - 10862124
Alignment:
Q  298 tgttagcggccaacactcgggtgagatttagtcccacattggatagatgggattcttgag 357  Q
    ||||||||||||||||||| | | ||||||||||||||| |||||||| |||||||||||    
T  10862182 tgttagcggccaacactcgaggg-gatttagtcccacatcggatagataggattcttgag 10862124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 156 - 191
Target Start/End: Original strand, 14280257 - 14280292
Alignment:
Q  156 attgttagcagccaacactcaggtgggatttagtcc 191  Q
    ||||||||||||||||||||||||||||||||||||    
T  14280257 attgttagcagccaacactcaggtgggatttagtcc 14280292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 298 - 345
Target Start/End: Original strand, 39420676 - 39420723
Alignment:
Q  298 tgttagcggccaacactcgggtgagatttagtcccacattggatagat 345  Q
    |||||||||||||| |||||||| ||||||||||||||| ||||||||    
T  39420676 tgttagcggccaactctcgggtgggatttagtcccacatcggatagat 39420723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 299 - 357
Target Start/End: Original strand, 936792 - 936850
Alignment:
Q  299 gttagcggccaacactcgggtgagatttagtcccacattggatagatgggattcttgag 357  Q
    ||||||||||||| |||||||| ||||||||| ||||| |||||||| ||| |||||||    
T  936792 gttagcggccaactctcgggtgggatttagtctcacatcggatagataggaatcttgag 936850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 298 - 359
Target Start/End: Complemental strand, 17326155 - 17326095
Alignment:
Q  298 tgttagcggccaacactcgggtgagatttagtcccacattggatagatgggattcttgagtg 359  Q
    |||||||||||||||||  | ||||||||||||||||||  ||||||| |||||||||||||    
T  17326155 tgttagcggccaacacttag-tgagatttagtcccacatctgatagataggattcttgagtg 17326095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 297 - 357
Target Start/End: Complemental strand, 4342383 - 4342324
Alignment:
Q  297 gtgttagcggccaacactcgggtgagatttagtcccacattggatagatgggattcttgag 357  Q
    ||||||||||||||||||| | || ||||||||||||||| |||||||| | |||||||||    
T  4342383 gtgttagcggccaacactcag-tgggatttagtcccacatcggatagatagaattcttgag 4342324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 298 - 357
Target Start/End: Complemental strand, 28193699 - 28193641
Alignment:
Q  298 tgttagcggccaacactcgggtgagatttagtcccacattggatagatgggattcttgag 357  Q
    ||||||||||||||||||| | | |||||||||||||||  ||||||| |||||||||||    
T  28193699 tgttagcggccaacactcgaggg-gatttagtcccacatcagatagataggattcttgag 28193641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 298 - 357
Target Start/End: Complemental strand, 33532860 - 33532802
Alignment:
Q  298 tgttagcggccaacactcgggtgagatttagtcccacattggatagatgggattcttgag 357  Q
    |||||| |||||||||||| | | ||||||||||||||| |||||||| |||||||||||    
T  33532860 tgttagtggccaacactcgaggg-gatttagtcccacatcggatagataggattcttgag 33532802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 318
Target Start/End: Original strand, 936992 - 937038
Alignment:
Q  272 gggctgggctgaagcgtgagggtgtgtgttagcggccaacactcggg 318  Q
    |||| ||||||||||||||||| ||||||| ||||||||| ||||||    
T  936992 gggccgggctgaagcgtgagggggtgtgttggcggccaactctcggg 937038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 191
Target Start/End: Complemental strand, 32811002 - 32810968
Alignment:
Q  157 ttgttagcagccaacactcaggtgggatttagtcc 191  Q
    ||||||||||||||||||| |||||||||||||||    
T  32811002 ttgttagcagccaacactcgggtgggatttagtcc 32810968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 191
Target Start/End: Complemental strand, 11349918 - 11349885
Alignment:
Q  158 tgttagcagccaacactcaggtgggatttagtcc 191  Q
    |||||||||||||||||| |||||||||||||||    
T  11349918 tgttagcagccaacactcgggtgggatttagtcc 11349885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 191
Target Start/End: Complemental strand, 11350312 - 11350279
Alignment:
Q  158 tgttagcagccaacactcaggtgggatttagtcc 191  Q
    |||||||||||||||||| |||||||||||||||    
T  11350312 tgttagcagccaacactcgggtgggatttagtcc 11350279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 277 - 357
Target Start/End: Complemental strand, 10450570 - 10450490
Alignment:
Q  277 gggctgaagcgtgagggtgtgtgttagcggccaacactcgggtgagatttagtcccacattggatagatgggattcttgag 357  Q
    ||||||||||||||||| |||||||||| ||||||||||||||| ||||||||||||||| |||||||| || ||||||||    
T  10450570 gggctgaagcgtgagggggtgtgttagcagccaacactcgggtgggatttagtcccacatcggatagataggtttcttgag 10450490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 272 - 357
Target Start/End: Complemental strand, 48511563 - 48511476
Alignment:
Q  272 gggctgggctgaagcgtgaggg--tgtgtgttagcggccaacactcgggtgagatttagtcccacattggatagatgggattcttgag 357  Q
    |||| |||||||||||||||||  |||||||||||||||||| |||||||| ||||||||||||||| |||||||| ||| |||||||    
T  48511563 gggccgggctgaagcgtgagggggtgtgtgttagcggccaactctcgggtgggatttagtcccacatcggatagataggaatcttgag 48511476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 272 - 357
Target Start/End: Original strand, 9180322 - 9180406
Alignment:
Q  272 gggctgggctgaagcgtgagggtgtgtgttagcggccaacactcgggtgagatttagtcccacattggatagatgggattcttgag 357  Q
    |||||||||||||||||||| | ||||||||||||||||| ||| | |  ||||||||||||||| |||||||| |||||||||||    
T  9180322 gggctgggctgaagcgtgagtgggtgtgttagcggccaaccctc-gatcggatttagtcccacatcggatagataggattcttgag 9180406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 272 - 345
Target Start/End: Complemental strand, 40770062 - 40769990
Alignment:
Q  272 gggctgggctgaagcgtgagggtgtgtgttagcggccaacactcgggtgagatttagtcccacattggatagat 345  Q
    |||||||||| ||||||||||| |||||||||||||||||||||| | | ||||||||||||||| ||||||||    
T  40770062 gggctgggctaaagcgtgagggggtgtgttagcggccaacactcgag-gggatttagtcccacatcggatagat 40769990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 296 - 357
Target Start/End: Original strand, 53966210 - 53966271
Alignment:
Q  296 tgtgttagcggccaacactcgggtgagatttagtcccacattggatagatgggattcttgag 357  Q
    |||||||||||||||| |||||||| ||||||||||||||| |||||||| |||||||||||    
T  53966210 tgtgttagcggccaactctcgggtgggatttagtcccacatcggatagataggattcttgag 53966271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 298 - 357
Target Start/End: Complemental strand, 15820730 - 15820671
Alignment:
Q  298 tgttagcggccaacactcgggtgagatttagtcccacattggatagatgggattcttgag 357  Q
    ||||||| ||||||||||||||| ||||||||||||||| |||||||| |||||||||||    
T  15820730 tgttagcagccaacactcgggtgggatttagtcccacatcggatagataggattcttgag 15820671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 297 - 357
Target Start/End: Complemental strand, 10450774 - 10450714
Alignment:
Q  297 gtgttagcggccaacactcgggtgagatttagtcccacattggatagatgggattcttgag 357  Q
    |||||||| ||||||||||||||| ||||||||||||||| |||||||| || ||||||||    
T  10450774 gtgttagcagccaacactcgggtgggatttagtcccacatcggatagataggtttcttgag 10450714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 272 - 357
Target Start/End: Complemental strand, 22666467 - 22666384
Alignment:
Q  272 gggctgggctgaagcgtgagggtgtgtgttagcggccaacactcgggtgagatttagtcccacattggatagatgggattcttgag 357  Q
    |||| |||||||||||||||||||||||||||| | ||||| || |   |||||||||||||| | |||||||| |||||||||||    
T  22666467 gggccgggctgaagcgtgagggtgtgtgttagcagtcaacattcag--tagatttagtcccacgtcggatagataggattcttgag 22666384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 278 - 357
Target Start/End: Complemental strand, 10453846 - 10453769
Alignment:
Q  278 ggctgaagcgtgagggtgtgtgttagcggccaacactcgggtgagatttagtcccacattggatagatgggattcttgag 357  Q
    |||||||| ||||||| |||||||||| ||||||||| || || |||||||||||| || |||||||| |||||||||||    
T  10453846 ggctgaagtgtgagggggtgtgttagcagccaacacttgg-tg-gatttagtcccagatcggatagataggattcttgag 10453769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 298 - 357
Target Start/End: Complemental strand, 11244666 - 11244607
Alignment:
Q  298 tgttagcggccaacactcgggtgagatttagtcccacattggatagatgggattcttgag 357  Q
    ||||||| | ||||||||||||| ||||||||||||||| |||||||| || ||||||||    
T  11244666 tgttagcagtcaacactcgggtgggatttagtcccacatcggatagataggtttcttgag 11244607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 298 - 357
Target Start/End: Complemental strand, 42190601 - 42190542
Alignment:
Q  298 tgttagcggccaacactcgggtgagatttagtcccacattggatagatgggattcttgag 357  Q
    |||||||||||||| |||||||| |||||| |||||||| |||||||| ||| |||||||    
T  42190601 tgttagcggccaactctcgggtgggatttaatcccacatcggatagataggaatcttgag 42190542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 297 - 357
Target Start/End: Complemental strand, 51734681 - 51734623
Alignment:
Q  297 gtgttagcggccaacactcgggtgagatttagtcccacattggatagatgggattcttgag 357  Q
    |||||||| |||||||||||| || ||||||||||||||| |||||||| |||||||||||    
T  51734681 gtgttagcagccaacactcgg-tg-gatttagtcccacatcggatagataggattcttgag 51734623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 298 - 357
Target Start/End: Original strand, 24453758 - 24453816
Alignment:
Q  298 tgttagcggccaacactcgggtgagatttagtcccacattggatagatgggattcttgag 357  Q
    ||||||||||||||||||| | | ||||||||||||||| |||||||| || ||||||||    
T  24453758 tgttagcggccaacactcgaggg-gatttagtcccacatcggatagatagggttcttgag 24453816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 298 - 357
Target Start/End: Complemental strand, 48837132 - 48837074
Alignment:
Q  298 tgttagcggccaacactcgggtgagatttagtcccacattggatagatgggattcttgag 357  Q
    ||||||| |||||||||||| || ||||||||||||||| |||||||| ||||| |||||    
T  48837132 tgttagctgccaacactcgg-tgggatttagtcccacatcggatagataggattattgag 48837074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 307 - 357
Target Start/End: Complemental strand, 48511755 - 48511705
Alignment:
Q  307 ccaacactcgggtgagatttagtcccacattggatagatgggattcttgag 357  Q
    ||||| |||||||| ||||||||||||||| |||||||| ||| |||||||    
T  48511755 ccaactctcgggtgggatttagtcccacatcggatagataggaatcttgag 48511705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 344
Target Start/End: Original strand, 9179114 - 9179158
Alignment:
Q  299 gttagcggccaacactcgggtgagatttagtcccacattggataga 344  Q
    ||||||||||||||||||| || ||||||||||||||| |||||||    
T  9179114 gttagcggccaacactcgg-tgggatttagtcccacatcggataga 9179158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 191
Target Start/End: Complemental strand, 10450549 - 10450516
Alignment:
Q  158 tgttagcagccaacactcaggtgggatttagtcc 191  Q
    |||||||||||||||||| |||||||||||||||    
T  10450549 tgttagcagccaacactcgggtgggatttagtcc 10450516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 191
Target Start/End: Complemental strand, 10450773 - 10450740
Alignment:
Q  158 tgttagcagccaacactcaggtgggatttagtcc 191  Q
    |||||||||||||||||| |||||||||||||||    
T  10450773 tgttagcagccaacactcgggtgggatttagtcc 10450740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 191
Target Start/End: Complemental strand, 15820730 - 15820697
Alignment:
Q  158 tgttagcagccaacactcaggtgggatttagtcc 191  Q
    |||||||||||||||||| |||||||||||||||    
T  15820730 tgttagcagccaacactcgggtgggatttagtcc 15820697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 6e-22; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 247 - 357
Target Start/End: Complemental strand, 46529104 - 46528989
Alignment:
Q  247 gggcttgcatcgtccacgcttcagg------gggctgggctgaagcgtgagggtgtgtgttagcggccaacactcgggtgagatttagtcccacattgga 340  Q
    |||||||||||||||||||||||||      |||| ||||||||||| ||||| |||||||||| |||||||||| |||| ||||||||| ||||| |||    
T  46529104 gggcttgcatcgtccacgcttcaggcccattgggccgggctgaagcgcgagggggtgtgttagcagccaacactc-ggtgggatttagtctcacatcgga 46529006  T
Q  341 tagatgggattcttgag 357  Q
    ||||| |||||||||||    
T  46529005 tagattggattcttgag 46528989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 298 - 357
Target Start/End: Original strand, 11290148 - 11290207
Alignment:
Q  298 tgttagcggccaacactcgggtgagatttagtcccacattggatagatgggattcttgag 357  Q
    |||||||||||||| |||||||| ||||||||||||||| |||||||| ||| |||||||    
T  11290148 tgttagcggccaactctcgggtgggatttagtcccacatcggatagataggaatcttgag 11290207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 254 - 357
Target Start/End: Complemental strand, 52810799 - 52810691
Alignment:
Q  254 catcgtccacgcttcagg------gggctgggctgaagcgtgagggtgtgtgttagcggccaacactcgggtgagatttagtcccacattggatagatgg 347  Q
    ||||||||||||||||||      |||| ||||||||||||||||| |||||||||||||||||||||   ||  ||||||||| |||| ||||||||      
T  52810799 catcgtccacgcttcaggcccattgggccgggctgaagcgtgagggggtgtgttagcggccaacactc-aatggaatttagtcctacatcggatagataa 52810701  T
Q  348 gattcttgag 357  Q
    ||||||||||    
T  52810700 gattcttgag 52810691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 277 - 352
Target Start/End: Original strand, 42901775 - 42901851
Alignment:
Q  277 gggctgaagcgtgagggtgtgtgttagcggccaa-cactcgggtgagatttagtcccacattggatagatgggattc 352  Q
    |||| |||||||||||| |||||||||| ||||| | |||||||| |||||||||||||||  ||||||| ||||||    
T  42901775 gggcagaagcgtgagggggtgtgttagctgccaaactctcgggtgggatttagtcccacatcagatagataggattc 42901851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 297 - 357
Target Start/End: Complemental strand, 50868139 - 50868079
Alignment:
Q  297 gtgttagcggccaacactcgggtgagatttagtcccacattggatagatgggattcttgag 357  Q
    ||||||||| ||||| |||||||| ||||||||||||||| |||||||| ||| |||||||    
T  50868139 gtgttagcgaccaactctcgggtgggatttagtcccacatcggatagataggaatcttgag 50868079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 272 - 357
Target Start/End: Complemental strand, 37288788 - 37288704
Alignment:
Q  272 gggctgggctgaagcgtgagggtgtgtgttagcggccaacactcgggtgagatttagtcccacattggatagatgggattcttgag 357  Q
    |||||||||||||| |||||||  ||||||| |  ||| ||||| |||| ||||| ||||||||| ||||||||| ||||||||||    
T  37288788 gggctgggctgaagggtgaggggctgtgttaaccaccagcactc-ggtgggattttgtcccacatcggatagatgagattcttgag 37288704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 300 - 357
Target Start/End: Original strand, 47845769 - 47845826
Alignment:
Q  300 ttagcggccaacactcgggtgagatttagtcccacattggatagatgggattcttgag 357  Q
    ||||| ||||||||||||||| ||||||||||||| | |||||||| || ||||||||    
T  47845769 ttagcagccaacactcgggtgggatttagtcccacgtcggatagataggtttcttgag 47845826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 296 - 357
Target Start/End: Complemental strand, 52810978 - 52810918
Alignment:
Q  296 tgtgttagcggccaacactcgggtgagatttagtcccacattggatagatgggattcttgag 357  Q
    |||||||||||||||||||| |||| ||||||||||||||| |||||||   ||||||||||    
T  52810978 tgtgttagcggccaacactc-ggtgggatttagtcccacatcggatagaaaagattcttgag 52810918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 297 - 357
Target Start/End: Original strand, 4026052 - 4026111
Alignment:
Q  297 gtgttagcggccaacactcgggtgagatttagtcccacattggatagatgggattcttgag 357  Q
    ||||| ||||||||||||| | || ||||||||||||||| |||||||| |||||||||||    
T  4026052 gtgttggcggccaacactcag-tgggatttagtcccacatcggatagataggattcttgag 4026111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 298 - 357
Target Start/End: Original strand, 33912023 - 33912081
Alignment:
Q  298 tgttagcggccaacactcgggtgagatttagtcccacattggatagatgggattcttgag 357  Q
    |||||||||||||||||||| || ||||||||||||||| || ||||| |||| ||||||    
T  33912023 tgttagcggccaacactcgg-tgggatttagtcccacatcgggtagataggatacttgag 33912081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 298 - 357
Target Start/End: Complemental strand, 37097855 - 37097797
Alignment:
Q  298 tgttagcggccaacactcgggtgagatttagtcccacattggatagatgggattcttgag 357  Q
    |||||||| ||||||||||| || |||||||||||||||  ||||||| |||||||||||    
T  37097855 tgttagcgaccaacactcgg-tgggatttagtcccacatcagatagataggattcttgag 37097797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 298 - 345
Target Start/End: Original strand, 47846029 - 47846076
Alignment:
Q  298 tgttagcggccaacactcgggtgagatttagtcccacattggatagat 345  Q
    |||||||  |||| ||||||||||||||||||||||||| ||||||||    
T  47846029 tgttagcatccaatactcgggtgagatttagtcccacatcggatagat 47846076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 345
Target Start/End: Original strand, 26941840 - 26941887
Alignment:
Q  297 gtgttagcggccaacactcgggtgagatttagtcccacattggatagat 345  Q
    ||||||||||||||||||| |||| ||||||||||||||| | ||||||    
T  26941840 gtgttagcggccaacactc-ggtgggatttagtcccacatcgaatagat 26941887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 272 - 357
Target Start/End: Original strand, 165738 - 165822
Alignment:
Q  272 gggctgggctgaagcgtgagggtgtgtgttagcggccaacactcgggtgagatttagtcccacattggatagatgggattcttgag 357  Q
    |||| ||||||||||||||||| |||||||||||||||||||||| | | |||||||||| |||| |||||||| | |||||||||    
T  165738 gggccgggctgaagcgtgagggggtgtgttagcggccaacactcgag-gggatttagtcctacatcggatagatagaattcttgag 165822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 280 - 357
Target Start/End: Original strand, 33396487 - 33396563
Alignment:
Q  280 ctgaagcgtgagggtgtgtgttagcggccaacactcgggtgagatttagtcccacattggatagatgggattcttgag 357  Q
    ||||||||||| || |||||||||||||||||||||||||| |||||||| |||||| |||||||| ||||| |||||    
T  33396487 ctgaagcgtgacggggtgtgttagcggccaacactcgggtgggatttagt-ccacatcggatagataggatttttgag 33396563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 298 - 357
Target Start/End: Original strand, 33396286 - 33396345
Alignment:
Q  298 tgttagcggccaacactcgggtgagatttagtcccacattggatagatgggattcttgag 357  Q
    ||||||||||||||||| ||||| ||||||||||||||| |||||||| |||||||||||    
T  33396286 tgttagcggccaacactagggtgggatttagtcccacatcggatagataggattcttgag 33396345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 298 - 357
Target Start/End: Original strand, 26842699 - 26842758
Alignment:
Q  298 tgttagcggccaacactcgggtgagatttagtcccacattggatagatgggattcttgag 357  Q
    ||||||| ||||||||||||||| ||||||||||||||| |||||||| || ||||||||    
T  26842699 tgttagcagccaacactcgggtgggatttagtcccacatcggatagataggtttcttgag 26842758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 247 - 354
Target Start/End: Original strand, 16193943 - 16194055
Alignment:
Q  247 gggcttgcatcgtccacgcttcagg------gggctgggctgaagcgtgagggtgtgtgttagcggccaacactcgggtgagatttagtcccacattgga 340  Q
    |||||||||| ||||||||||||||      || | ||||||||||||||||| ||||| |||||||||||||| | | ||||| ||||||||||| |||    
T  16193943 gggcttgcatagtccacgcttcaggtccattggacggggctgaagcgtgagggggtgtgctagcggccaacactagag-gagatctagtcccacatcgga 16194041  T
Q  341 tagatgggattctt 354  Q
    || || ||||||||    
T  16194042 tatataggattctt 16194055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 298 - 356
Target Start/End: Original strand, 25183982 - 25184040
Alignment:
Q  298 tgttagcggccaacactcgggtgagatttagtcccacattggatagatgggattcttga 356  Q
    ||||||| ||||||||||||||| ||||||||||| ||| ||||||||  |||||||||    
T  25183982 tgttagcagccaacactcgggtgggatttagtcccgcatcggatagataagattcttga 25184040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 191
Target Start/End: Original strand, 26842696 - 26842732
Alignment:
Q  155 tattgttagcagccaacactcaggtgggatttagtcc 191  Q
    ||||||||||||||||||||| |||||||||||||||    
T  26842696 tattgttagcagccaacactcgggtgggatttagtcc 26842732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 191
Target Start/End: Original strand, 25183982 - 25184015
Alignment:
Q  158 tgttagcagccaacactcaggtgggatttagtcc 191  Q
    |||||||||||||||||| |||||||||||||||    
T  25183982 tgttagcagccaacactcgggtgggatttagtcc 25184015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0785 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0785
Description:

Target: scaffold0785; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 283 - 336
Target Start/End: Complemental strand, 3035 - 2983
Alignment:
Q  283 aagcgtgagggtgtgtgttagcggccaacactcgggtgagatttagtcccacat 336  Q
    ||||||||||| ||||||||||||||||||||| |||| |||||||||||||||    
T  3035 aagcgtgagggggtgtgttagcggccaacactc-ggtgggatttagtcccacat 2983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 278 - 332
Target Start/End: Complemental strand, 34629 - 34575
Alignment:
Q  278 ggctgaagcgtgagggtgtgtgttagcggccaacactcgggtgagatttagtccc 332  Q
    |||||||||||||||| |||||||| |||||||| ||| |||||||||| |||||    
T  34629 ggctgaagcgtgagggggtgtgttaacggccaactctcaggtgagattttgtccc 34575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 296 - 357
Target Start/End: Complemental strand, 34777 - 34715
Alignment:
Q  296 tgtgttagcggccaacactcggg-tgagatttagtcccacattggatagatgggattcttgag 357  Q
    |||||||||||||||| |||||| ||||||||||||||| || |||||||| ||| |||||||    
T  34777 tgtgttagcggccaactctcggggtgagatttagtcccatatcggatagataggaatcttgag 34715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University