View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21052_low_3 (Length: 323)
Name: NF21052_low_3
Description: NF21052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21052_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 233; Significance: 1e-129; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 4368752 - 4368516
Alignment:
| Q |
1 |
aagatgaagatgaagatgaagatggagatgaaaattaaatggaagattatgtttttattttgaaagcattctagattaaagatctagaatttgactcctt |
100 |
Q |
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| T |
4368752 |
aagatgaagatgaagatgaagatggagatgaaaattaaatggaagattatgtttttattttgaaagcattctagattaaagatctagaatttgactcctt |
4368653 |
T |
|
| Q |
101 |
gttttgggtgtttacatcataccacttgttaaaagcttaatattatagcttaagttgttaatttgtgacttatcagttgtgtatgactttcctatggatt |
200 |
Q |
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| T |
4368652 |
gttttgggtgtttacatcataccacttgtgaaaagcttaatattatagcttaagttgttaatttgtgacttatcagttgtgtatgactttcctatggatt |
4368553 |
T |
|
| Q |
201 |
ttgaattaagtttagtgtattgtctgaagtgattttc |
237 |
Q |
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| T |
4368552 |
ttgaattaagtttagtgtattgtctgaagtgattttc |
4368516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 8 - 237
Target Start/End: Complemental strand, 4364357 - 4364127
Alignment:
| Q |
8 |
agatgaagatgaagatggagatgaaaattaaatggaagattat-gtttttattttgaaag-cattctagattaaagatctagaatttgactccttgtttt |
105 |
Q |
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| T |
4364357 |
agatgaagatggatatgaagatgaaaattaaatggaagattattgtttttaatttgaaaaactttctaatttaaatatctagtatttgactccttgtttt |
4364258 |
T |
|
| Q |
106 |
gggtgtttacatcataccacttgttaaaagcttaatattatagcttaagttgttaatttgtgacttatcagttgtgtatgactttcctatggattttgaa |
205 |
Q |
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| T |
4364257 |
gggtgtttgcatcttgccacttgttaaaagcttaatactcaagcttaagtttgtaatttgtgacttatgaattgtgtatgaattacctatgg-gtttgaa |
4364159 |
T |
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| Q |
206 |
ttaagtttagtgtattgtctgaagtgattttc |
237 |
Q |
| |
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| T |
4364158 |
ttaagtgtagtgtactgtctgtagtaattttc |
4364127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 72 - 237
Target Start/End: Complemental strand, 4358917 - 4358751
Alignment:
| Q |
72 |
tagattaaagatctagaatttgactccttgttttgggtgtttacatcataccacttgttaaaagctt-aatattatagcttaagttgttaatttgtgact |
170 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||| | | | |||||| ||||||||| |||| |||||||||||||||||| || ||||| |
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| T |
4358917 |
tagattaaatatctagaatttgactccttgttttgggtgtttagagcttgtcacttgctaaaagcttaaatactatagcttaagttgttaa-ttctgact |
4358819 |
T |
|
| Q |
171 |
tatcagttgtgtatgactttcctatggattttgaa-ttaagtttagtgtattgtctgaagtgattttc |
237 |
Q |
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| T |
4358818 |
tatgaattgtgtacgactttcctatgggtttcgaatttaagttcagtgtagtgtttgttgtgattttc |
4358751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 124 - 214
Target Start/End: Complemental strand, 4388491 - 4388401
Alignment:
| Q |
124 |
acttgttaaaagcttaatattatagcttaagttgttaatttgtgacttatcagttgtgtatgactttcctatggattttgaattaagttta |
214 |
Q |
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| T |
4388491 |
acttgttaaaagcttaatactatagcttaaggtatgaatttgtgacttatgaattgtgtttggctttcttatgggttttgagttaagttta |
4388401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 187
Target Start/End: Original strand, 7555893 - 7555934
Alignment:
| Q |
146 |
tagcttaagttgttaatttgtgacttatcagttgtgtatgac |
187 |
Q |
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| T |
7555893 |
tagcttaagttcttaatttttgacttatgagttgtgtatgac |
7555934 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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