View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21052_low_5 (Length: 267)
Name: NF21052_low_5
Description: NF21052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21052_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 233; Significance: 1e-129; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 16 - 260
Target Start/End: Original strand, 4368081 - 4368325
Alignment:
| Q |
16 |
cagattaagctgtttataatacaatgaatgcttaaaacttcatccaagtaaatgaaagaaaatagatttcagtaaatccaatagggtttataaaatataa |
115 |
Q |
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| T |
4368081 |
cagattaagctgtttataatacaatgaatgcttaaaacttcatccaagtaaatgaaagaaaatagatttcagtaaatccaatagggtttataaaacataa |
4368180 |
T |
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| Q |
116 |
atcagaccaaaacaaatctcgaatattaacgtaccaacgccatctatcccagctagttttggcatgaacaactgcctgatgtggttgtcagctgcattct |
215 |
Q |
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| T |
4368181 |
atcagaccaaaacaaatctcgaatattaacataccaacaccatctatcccagctagttttggcatgaacaactgcctgatgtggttgtcagctgcattct |
4368280 |
T |
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| Q |
216 |
cagctgtcagtgtctcacacctgaatgaatccatgattcttttct |
260 |
Q |
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| T |
4368281 |
cagctgtcagtgtctcacacctgaatgaatccatgattcttttct |
4368325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 16 - 260
Target Start/End: Original strand, 4363652 - 4363891
Alignment:
| Q |
16 |
cagattaagctgtttataatacaatgaatgcttaaaacttcatccaagtaaatgaaagaaaatagatttcagtaaatccaatagggtttata------aa |
109 |
Q |
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| T |
4363652 |
cagattaagctgtttataatacaatgaatgcataaaacttcatccaagtaaattaaag--aatacatttcagtaaatccaatagggtttataaaaaataa |
4363749 |
T |
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| Q |
110 |
atataaatcagaccaaaacaaatctcgaatattaacgtaccaacgccatctatcccagctagttttggcatgaacaactgcctgatgtggttgtcagctg |
209 |
Q |
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| T |
4363750 |
acataaatcagaccaaaacaaatctcgaatattaacat---------atctatcccagctagttttggcaagaacaactgcctgatgtggtcatcagctg |
4363840 |
T |
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| Q |
210 |
cattctcagctgtcagtgtctcacacctgaatgaatccatgattcttttct |
260 |
Q |
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| T |
4363841 |
cattctcagctttcagtgtctcacacttggatgaaaccgtggttcttttct |
4363891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 113 - 220
Target Start/End: Original strand, 4358392 - 4358499
Alignment:
| Q |
113 |
taaatcagaccaaaacaaatctcgaatattaacgtaccaacgccatctatcccagctagttttggcatgaacaactgcctgatgtggttgtcagctgcat |
212 |
Q |
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|||||||||| |||||||||| ||||||| || ||||||| ||||| |||||||||||||||||| |||||||||||||||||||| ||||||||||| |
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| T |
4358392 |
taaatcagactgaaacaaatcttgaatattgacataccaacaccatccatcccagctagttttggctagaacaactgcctgatgtggtcgtcagctgcat |
4358491 |
T |
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| Q |
213 |
tctcagct |
220 |
Q |
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|||||||| |
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| T |
4358492 |
tctcagct |
4358499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 137 - 260
Target Start/End: Complemental strand, 4417925 - 4417805
Alignment:
| Q |
137 |
aatattaacgtaccaacgccatctatcccagctagttttggcatgaacaactgcctgatgtggttgtcagctgcattctcagctgtcagtgtctcacacc |
236 |
Q |
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|||||| || ||||||| |||| |||||||||||||||||||||||| | ||||||||||| |||||||||| ||||||| |||||||||||||| |
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| T |
4417925 |
aatattgacataccaacagcatccatcccagctagttttggcatgaac---ttcctgatgtggtcttcagctgcatcctcagctttcagtgtctcacact |
4417829 |
T |
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| Q |
237 |
tgaatgaatccatgattcttttct |
260 |
Q |
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|||||| | |||||||||||| |
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| T |
4417828 |
caaatgaaactgtgattcttttct |
4417805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 46
Target Start/End: Original strand, 4358339 - 4358369
Alignment:
| Q |
16 |
cagattaagctgtttataatacaatgaatgc |
46 |
Q |
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| T |
4358339 |
cagattaagctgtttataatacaatgaatgc |
4358369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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