View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21053_high_1 (Length: 661)
Name: NF21053_high_1
Description: NF21053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21053_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 505; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 67 - 642
Target Start/End: Original strand, 53556983 - 53557551
Alignment:
| Q |
67 |
tcttaacaatacaaaaaagatgggtagagctccatgttgtgacaaggctaacgtgaagaaaggaccttggtctcctgaagaagatgctacactcaaatct |
166 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53556983 |
tcttaataatacaaaaaagatgggtagagctccatgctgtgacaaggctaacgtgaagaaaggaccttggtctcctgaagaagatgctacactcaaatct |
53557082 |
T |
|
| Q |
167 |
tacattgaaacaaatggaactggaggaaattggattgctcttcctcaaaaaattggtaaatannnnnnnncttaatttttgtaattactagtacttctta |
266 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |
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| T |
53557083 |
tacattgaaacaaatggaactggaggaaattggattgctcttcctcaaaaaattggtaaatattttttttcttaatttttgt---tactagtacttctta |
53557179 |
T |
|
| Q |
267 |
gattatatatatgtatgtattgatcacaagggaattattattttctctttgtggtcgtagtacctcttgtacttttttcatctgggtttgaataaaatta |
366 |
Q |
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|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
53557180 |
gattata----tgtatgtattgatcacaagggaattattattttctctttgtggtcgtagtacctcttgtacttttttcatctgagtttgaataaaatta |
53557275 |
T |
|
| Q |
367 |
tttgtttgctgatcaaacaagaaaattgtatactacgagaaaattatgtgaaatctatctctaattttgtagtatatggaaacttgaaactattttgatt |
466 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53557276 |
tttgtttgctgatcaaacaagaaaattgtatactacgagaaaattatgtgaaatctatctctaattttgtagtatatggaaacttgaaactattttgatt |
53557375 |
T |
|
| Q |
467 |
ataatagtaatcttggattagtgcaaactaattaatgggataattacaaaaaattcacagggctcaagagatgtggaaagagttgcagacttaggtggtt |
566 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53557376 |
ataatagtaatcttggtttagtgcaaactaattaatgggataattacaaaaaattcacagggctcaagagatgtggaaagagttgcagacttaggtggtt |
53557475 |
T |
|
| Q |
567 |
aaattacttgagacctaatatcaaacatggtggatttactgaagaagaagacaacatcatttgcagcctttacata |
642 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53557476 |
aaattacttgagacctaatatcaaacatggtggatttactgaagaagaagacaacatcatttgcagcctttacata |
53557551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 49
Target Start/End: Original strand, 53556926 - 53556965
Alignment:
| Q |
11 |
catcatcatcatctcaaggagag-aattaaacctaatttc |
49 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||| |
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| T |
53556926 |
catcatcatcatctcaaggagagaaattaaacctaatttc |
53556965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 1e-30; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 77 - 225
Target Start/End: Original strand, 4685341 - 4685489
Alignment:
| Q |
77 |
acaaaaaagatgggtagagctccatgttgtgacaaggctaacgtgaagaaaggaccttggtctcctgaagaagatgctacactcaaatcttacattgaaa |
176 |
Q |
| |
|
|||| ||| |||||||||||||| ||||||||||| || |||||||||||||| || |||||||| ||||||||| ||| ||||||||||||||| ||| |
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| T |
4685341 |
acaacaaacatgggtagagctccttgttgtgacaaagcaaacgtgaagaaaggtccatggtctccagaagaagattctaaactcaaatcttacatagaac |
4685440 |
T |
|
| Q |
177 |
caaatggaactggaggaaattggattgctcttcctcaaaaaattggtaa |
225 |
Q |
| |
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| |||| ||||| || || ||||||||||| || |||||||||||||| |
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| T |
4685441 |
aacatggtactggtggtaactggattgctctcccacaaaaaattggtaa |
4685489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 580 - 641
Target Start/End: Original strand, 4685705 - 4685766
Alignment:
| Q |
580 |
cctaatatcaaacatggtggatttactgaagaagaagacaacatcatttgcagcctttacat |
641 |
Q |
| |
|
|||||| ||||||||||||| || | ||||||||||| ||||| ||||||||||||||||| |
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| T |
4685705 |
cctaatctcaaacatggtggtttctccgaagaagaagataacattatttgcagcctttacat |
4685766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 86 - 162
Target Start/End: Complemental strand, 4612088 - 4612012
Alignment:
| Q |
86 |
atgggtagagctccatgttgtgacaaggctaacgtgaagaaaggaccttggtctcctgaagaagatgctacactcaa |
162 |
Q |
| |
|
||||| |||||||| ||||||||||| | || || |||| |||||| ||||||||||| |||||||| |||||||| |
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|
| T |
4612088 |
atgggaagagctccttgttgtgacaaagaaaaagttaagagaggaccatggtctcctgatgaagatgcaacactcaa |
4612012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 86 - 213
Target Start/End: Original strand, 5113168 - 5113295
Alignment:
| Q |
86 |
atgggtagagctccatgttgtgacaaggctaacgtgaagaaaggaccttggtctcctgaagaagatgctacactcaaatcttacattgaaacaaatggaa |
185 |
Q |
| |
|
||||| |||||||| || |||||||| || || || || ||||| || ||||| |||||||||||||||| |||||| |||||||| ||| |||||| | |
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| T |
5113168 |
atgggaagagctccttgctgtgacaaagccaatgtcaaaaaaggtccatggtcacctgaagaagatgctaaactcaagtcttacatagaacaaaatggta |
5113267 |
T |
|
| Q |
186 |
ctggaggaaattggattgctcttcctca |
213 |
Q |
| |
|
|||| ||||||||||||||||| ||||| |
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|
| T |
5113268 |
ctggtggaaattggattgctctacctca |
5113295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 532 - 635
Target Start/End: Original strand, 5113496 - 5113599
Alignment:
| Q |
532 |
aagagatgtggaaagagttgcagacttaggtggttaaattacttgagacctaatatcaaacatggtggatttactgaagaagaagacaacatcatttgca |
631 |
Q |
| |
|
||||||||||| || || || | ||||| ||||||||||| | ||||| ||||| ||||||||||| || | |||||||||||| |||| ||||||| |
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|
| T |
5113496 |
aagagatgtgggaaaagctgtcgtcttagatggttaaattatcttagaccaaatattaaacatggtggtttctccgaagaagaagacgacattatttgca |
5113595 |
T |
|
| Q |
632 |
gcct |
635 |
Q |
| |
|
|||| |
|
|
| T |
5113596 |
gcct |
5113599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 86 - 217
Target Start/End: Complemental strand, 40820235 - 40820104
Alignment:
| Q |
86 |
atgggtagagctccatgttgtgacaaggctaacgtgaagaaaggaccttggtctcctgaagaagatgctacactcaaatcttacattgaaacaaatggaa |
185 |
Q |
| |
|
||||| |||||||| || |||||||| || || |||||||||||||| ||||| || ||||||||| | | |||||| || || |||| |||||| |
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|
| T |
40820235 |
atgggaagagctccttgctgtgacaaagcaaatgtgaagaaaggaccatggtcaccagaagaagatacaaagctcaaagagtatatagaaaagcatggaa |
40820136 |
T |
|
| Q |
186 |
ctggaggaaattggattgctcttcctcaaaaa |
217 |
Q |
| |
|
|||| |||||||||||| |||||||||||||| |
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|
| T |
40820135 |
ctggtggaaattggatttctcttcctcaaaaa |
40820104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 80 - 207
Target Start/End: Complemental strand, 41208920 - 41208793
Alignment:
| Q |
80 |
aaaaagatgggtagagctccatgttgtgacaaggctaacgtgaagaaaggaccttggtctcctgaagaagatgctacactcaaatcttacattgaaacaa |
179 |
Q |
| |
|
||||| ||||| ||| |||| || |||||||| ||||| || |||||||| || |||||||||||||||||||| | ||| || ||||| || | | |
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|
| T |
41208920 |
aaaaaaatgggaagatctccttgctgtgacaaagctaatgtaaagaaaggtccatggtctcctgaagaagatgcaaaactaaaggaatacatagagaaac |
41208821 |
T |
|
| Q |
180 |
atggaactggaggaaattggattgctct |
207 |
Q |
| |
|
|||||||||||||||| |||||| |||| |
|
|
| T |
41208820 |
atggaactggaggaaactggattactct |
41208793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 580 - 638
Target Start/End: Complemental strand, 47846845 - 47846787
Alignment:
| Q |
580 |
cctaatatcaaacatggtggatttactgaagaagaagacaacatcatttgcagccttta |
638 |
Q |
| |
|
||||| ||||| || ||||| || || |||||||||||||||||||||||||||||||| |
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|
| T |
47846845 |
cctaacatcaagcacggtggtttcaccgaagaagaagacaacatcatttgcagccttta |
47846787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 152
Target Start/End: Complemental strand, 47847119 - 47847050
Alignment:
| Q |
83 |
aagatgggtagagctccatgttgtgacaaggctaacgtgaagaaaggaccttggtctcctgaagaagatg |
152 |
Q |
| |
|
|||||||| || || || || |||||||| || ||||||||||||||||||||||| || |||||||||| |
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|
| T |
47847119 |
aagatgggaagggcaccttgctgtgacaaagcaaacgtgaagaaaggaccttggtcaccagaagaagatg |
47847050 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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