View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21053_high_15 (Length: 253)

Name: NF21053_high_15
Description: NF21053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21053_high_15
NF21053_high_15
[»] chr2 (2 HSPs)
chr2 (11-253)||(39296782-39297024)
chr2 (11-253)||(39289902-39290144)


Alignment Details
Target: chr2 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 11 - 253
Target Start/End: Complemental strand, 39297024 - 39296782
Alignment:
Q  11 cagagacaacagtatcatgaacaataattttgtccttgggatatttctctaccatttcctttatctcatttccaaagttcagttcaatatctttagccac 110  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39297024 cagaaacaacagtatcatgaacaataattttgtccttgggatatttctctaccatttcctttatctcatttccaaagttcagttcaatatctttagccac 39296925  T
Q  111 ccaaatcaaatacacatcagccttacttttctgcaagagatatgataggaacacacaaattccagaacctgttgctactaaaagcactttttgatacaaa 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39296924 ccaaatcaaatacacatcagccttacttttctgcaagagatatgataggaacacacaaattccagaacctgttgctactaaaagcactttttgatacaaa 39296825  T
Q  211 ttcactagataaggtaatccagcaaaatgaactgaacgaatcc 253  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  39296824 ttcactagataaggtaatccagcaaaatgaactgaacgaatcc 39296782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 11 - 253
Target Start/End: Complemental strand, 39290144 - 39289902
Alignment:
Q  11 cagagacaacagtatcatgaacaataattttgtccttgggatatttctctaccatttcctttatctcatttccaaagttcagttcaatatctttagccac 110  Q
    |||| ||| |||||||||||||||| |||||||||| || ||||||||| |||| |||||||||||| ||||||||||||| ||||||||||||||||||    
T  39290144 cagaaacagcagtatcatgaacaatgattttgtcctcggaatatttctccaccaattcctttatctcttttccaaagttcatttcaatatctttagccac 39290045  T
Q  111 ccaaatcaaatacacatcagccttacttttctgcaagagatatgataggaacacacaaattccagaacctgttgctactaaaagcactttttgatacaaa 210  Q
    |||||||||  |||||||||||||| |||||||||| ||| |||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  39290044 ccaaatcaagcacacatcagccttatttttctgcaacagaaatgataagaacacacaaatcccagaacctgttgctactaaaagcactttttgatacaaa 39289945  T
Q  211 ttcactagataaggtaatccagcaaaatgaactgaacgaatcc 253  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  39289944 ttcactagataaggtaatccagcaaaatgaactgaacgaatcc 39289902  T

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