View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21053_high_3 (Length: 530)
Name: NF21053_high_3
Description: NF21053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21053_high_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 462; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 6 - 512
Target Start/End: Original strand, 1534682 - 1535184
Alignment:
| Q |
6 |
ggagtgtaattcaaacatatttgaggagtggagattttaatttactctatcaattaattaatttagatgccggtatattggtacactcgaattcttgtac |
105 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1534682 |
ggagtgtaattcaaacatatttgaggagaggagattttaatttactctatcaattaattaatttagatgccggtatattggtacactcgaattcttgtac |
1534781 |
T |
|
| Q |
106 |
cgtaaaaattgttttgaaagatagtttaacaatgaaaatcctcatcttcactgggtgcagcgtgactattattcagtctcatgagaagtcaagaatcata |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1534782 |
cgtaaaaattgttttgaaagatagtttaacaatgaaaatcctcatcttcactaggtgcagcgtgactattattcagtctcatgagaagtcaagaatcata |
1534881 |
T |
|
| Q |
206 |
atattagttgatgatttgaaaaagcctctagaatctttgtctctaacaatggaattgtttttctttcaaaaactatacctttggttcacccaaaaactat |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1534882 |
atattagttgatgatttgaaaaagcctctaaagtctttgtctctaacaatggaattttttttctttcaaaaactatacctttggttcacccaaaaactat |
1534981 |
T |
|
| Q |
306 |
atactataaattagttcaataataaaaagtcaataagcttgcattaaaatatatcatttatcaatgtagaccgttttgttaattaaaaagcttaattaaa |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1534982 |
atactataaattagttcaataataaaaagtcaataagcttgcattaaa----atcatttatcaatgtagaccgttttgttaattaaaaagcttaattaaa |
1535077 |
T |
|
| Q |
406 |
ttaaacggttaaagcaatggaacccgaatgtaacatgcatgcgattccattgtgtctcttgacatatgtacctgtcaacgacacaccaattagatcacat |
505 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
1535078 |
ttaaacggttaaaacaatggaacccgaatgtaacatgcatgcgattccattgtgtctcttgacatatgtacctgtcaacgacacaccaaatagatcacat |
1535177 |
T |
|
| Q |
506 |
tcacacc |
512 |
Q |
| |
|
||||||| |
|
|
| T |
1535178 |
tcacacc |
1535184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 2790124 - 2790075
Alignment:
| Q |
3 |
aggggagtgtaattcaaacatatttgaggagtggagattttaatttactc |
52 |
Q |
| |
|
||||||||||||||||||||| ||||||||| ||||| | |||||||||| |
|
|
| T |
2790124 |
aggggagtgtaattcaaacatctttgaggagaggagagtgtaatttactc |
2790075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 38790771 - 38790820
Alignment:
| Q |
3 |
aggggagtgtaattcaaacatatttgaggagtggagattttaatttactc |
52 |
Q |
| |
|
||||||||||||||||||||| ||||||| | ||||| | |||||||||| |
|
|
| T |
38790771 |
aggggagtgtaattcaaacatctttgaggggaggagaatgtaatttactc |
38790820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 36605431 - 36605483
Alignment:
| Q |
3 |
aggggagtgtaattcaaacatatttgaggagtggagattttaatttactctat |
55 |
Q |
| |
|
||||||||||||||||||||| ||||||| | ||||| | ||||||||||||| |
|
|
| T |
36605431 |
aggggagtgtaattcaaacatctttgaggggaggagagtgtaatttactctat |
36605483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 54
Target Start/End: Complemental strand, 33113156 - 33113105
Alignment:
| Q |
3 |
aggggagtgtaattcaaacatatttgaggagtggagattttaatttactcta |
54 |
Q |
| |
|
||||||||||||||||||||| ||||||| |||| || | |||||||||||| |
|
|
| T |
33113156 |
aggggagtgtaattcaaacatttttgaggggtggggagtgtaatttactcta |
33113105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 6 - 53
Target Start/End: Complemental strand, 7478713 - 7478666
Alignment:
| Q |
6 |
ggagtgtaattcaaacatatttgaggagtggagattttaatttactct |
53 |
Q |
| |
|
|||||||||||||||||| ||||||||| ||||| | ||||||||||| |
|
|
| T |
7478713 |
ggagtgtaattcaaacatctttgaggagaggagaatgtaatttactct |
7478666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 615480 - 615428
Alignment:
| Q |
1 |
gaaggggagtgtaattcaaacatatttgaggagtggagattttaatttactct |
53 |
Q |
| |
|
||||||||||||||||||| ||| ||||||| | ||||| | ||||||||||| |
|
|
| T |
615480 |
gaaggggagtgtaattcaagcatctttgaggggaggagagtgtaatttactct |
615428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 6232465 - 6232413
Alignment:
| Q |
3 |
aggggagtgtaattcaaacatatttgaggagtggagattttaatttactctat |
55 |
Q |
| |
|
||||||||||||||||| ||| ||||||| | ||||| | ||||||||||||| |
|
|
| T |
6232465 |
aggggagtgtaattcaagcatctttgaggggaggagagtgtaatttactctat |
6232413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 41262790 - 41262842
Alignment:
| Q |
3 |
aggggagtgtaattcaaacatatttgaggagtggagattttaatttactctat |
55 |
Q |
| |
|
||||||||||||||||| ||||||||||||| || | | ||||||||||||| |
|
|
| T |
41262790 |
aggggagtgtaattcaagcatatttgaggagagggaagtataatttactctat |
41262842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University