View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21053_high_6 (Length: 460)
Name: NF21053_high_6
Description: NF21053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21053_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 1 - 443
Target Start/End: Complemental strand, 24914168 - 24913730
Alignment:
| Q |
1 |
cagaagtaatccattccacagctcatagactgtagaggttgcatccattcagaatccactccccacattggtctgatacattgacactttattttctttg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24914168 |
cagaagtaatccattccacagctcatagactgtagaggttgcatccattcagaatccactccccacattggtctgatacattgacactttattttctttg |
24914069 |
T |
|
| Q |
101 |
aagaagtagatagtataaaaatacacatgatatagtctttacacatgcattctgttatgaaacagtagagtaaaattggacatgacaagaagattcctaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
24914068 |
aagaagtagatagtataaaaatacacatgatatagtctttacacatgcattctgttatgaaacagtagagtaaaatt----atgacaagaagattcctaa |
24913973 |
T |
|
| Q |
201 |
aacttgattaaaatagaaactgaaatttgcgcagaatagcagattacagaaagtagaaagatgaacacataaaatttatcaagatatcgaggtcgatatc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24913972 |
aacttgattaaaatagaaactgaaatttgcgcagaatagcatattacagaaagtagaaagatgaacacataaaatttatcaagatatcgaggtcgatatc |
24913873 |
T |
|
| Q |
301 |
atcactatgatcatgctaaatattaaaaaccagtgttacaaaggtgtttaggaagaaaatcacatcctcctaacttatccaacaactaggtttaactaat |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24913872 |
atcactatgatcatgctaaatattaaaaaccagtgttacaaaggtgtttaggaagaaaatcacatcctcctaacttatccaacaactaggtttaactaat |
24913773 |
T |
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| Q |
401 |
tataaagctagttataatcgaatcacactctaacttatccaac |
443 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||| |
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| T |
24913772 |
tataaagctaattataatcgaatcacactctaacttatccaac |
24913730 |
T |
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