View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21053_low_10 (Length: 361)
Name: NF21053_low_10
Description: NF21053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21053_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 11 - 346
Target Start/End: Complemental strand, 39296798 - 39296463
Alignment:
| Q |
11 |
atgaactgaacgaatccaaagatgtttaggaggtgaagaaactaatgattttgtaaaatcaccaactgcaccagctagcatcatgtgatccttttttcca |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39296798 |
atgaactgaacgaatccaaagatgtttaggaggtgaagaaactaatgattttgtaaaatcaccaactgcaccagctagcatcatgtgatccttttttcca |
39296699 |
T |
|
| Q |
111 |
tctgatatgattccaaatgcatgccattctgataatggtgatggactaattctacctaataaacctgctttaacaccaccttcaaatttaataattgaag |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39296698 |
tctgatatgattccaaatgcatgccattctgataatggtgatggacttattctacctaataaacctgctttaacaccaccttcaaatttaataattgaag |
39296599 |
T |
|
| Q |
211 |
catgatttgatggtgctgtgacactaacttgaacttttttaatacttaaccaaggaatcataatgagaattgtgatagctaaagtgaaccaacattcttg |
310 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
39296598 |
catgatttgatggtgctgtgacactaacttgtacttttttaatacttaaccaaggaatcataatgagaattgtgatagctaaagtgaaccaacactcttg |
39296499 |
T |
|
| Q |
311 |
tttcttaatcatctttgaaatggttatgtgataggt |
346 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
39296498 |
tttcttaatcatctttgaaatggttatgtgataggt |
39296463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 11 - 346
Target Start/End: Complemental strand, 39289918 - 39289583
Alignment:
| Q |
11 |
atgaactgaacgaatccaaagatgtttaggaggtgaagaaactaatgattttgtaaaatcaccaactgcaccagctagcatcatgtgatccttttttcca |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39289918 |
atgaactgaacgaatccaaagatgtttaggaggtgaagaaactaatgattttgtaaaatcaccaactgcaccagctagcatcatgtgatccttttttcca |
39289819 |
T |
|
| Q |
111 |
tctgatatgattccaaatgcatgccattctgataatggtgatggactaattctacctaataaacctgctttaacaccaccttcaaatttaataattgaag |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39289818 |
tctgatatgattccaaatgcatgccattctgataatggtgatggacttattctacctaataaacctgctttaacaccaccttcaaatttaataattgaag |
39289719 |
T |
|
| Q |
211 |
catgatttgatggtgctgtgacactaacttgaacttttttaatacttaaccaaggaatcataatgagaattgtgatagctaaagtgaaccaacattcttg |
310 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39289718 |
catgatttgatggtgctgtgacactaacttgtacttttttaatacttaaccaaggaatcataatgagaattgtgatagctaaagtgaaccaacattcttg |
39289619 |
T |
|
| Q |
311 |
tttcttaatcatctttgaaatggttatgtgataggt |
346 |
Q |
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|||||||| ||||||| ||||||||| ||||||||| |
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| T |
39289618 |
tttcttaaccatctttaaaatggttaagtgataggt |
39289583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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