View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21053_low_12 (Length: 291)

Name: NF21053_low_12
Description: NF21053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21053_low_12
NF21053_low_12
[»] chr5 (11 HSPs)
chr5 (18-291)||(39471991-39472264)
chr5 (18-291)||(39475461-39475737)
chr5 (18-290)||(39450955-39451230)
chr5 (18-291)||(39454594-39454867)
chr5 (18-291)||(39464475-39464748)
chr5 (18-240)||(39458286-39458508)
chr5 (18-242)||(39486414-39486644)
chr5 (18-291)||(39470698-39470971)
chr5 (18-241)||(39460205-39460428)
chr5 (18-131)||(39480328-39480441)
chr5 (18-119)||(43312626-43312727)


Alignment Details
Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 18 - 291
Target Start/End: Original strand, 39471991 - 39472264
Alignment:
Q  18 gaagaaagcagaagtggtgtttgtctcttttccggctgagggtcatatagtttctgctctcgagtttgcgaagcttctaatcaaccgtgataaccgtctc 117  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39471991 gaagaaagcagaagtggtgtttgtcccttttccggctgagggtcatatagtttctgctctcgagtttgcgaagcttctaatcaaccgtgataaccgtctc 39472090  T
Q  118 cgaataactgttttagttatcaaattcccacacatcacagaaaccgatgtctacactaaatcccttcctatctccgattcactccacatcatcaaccttc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39472091 cgaataactgttttagttatcaaattcccacacatcacagaaaccgatgtctacactaaatcccttcctatctccgattcactccacatcatcaaccttc 39472190  T
Q  218 cagaatgttctcttgccccaaacacagatcaaggttcctctatgactgcgctcctcgaagctcagaaaccaaac 291  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  39472191 cagaatgttctcttgccccaaacacagatcaaggtccctctatgactgcgctcctcgaagctcagaaaccaaac 39472264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 18 - 291
Target Start/End: Original strand, 39475461 - 39475737
Alignment:
Q  18 gaagaaagcagaagtggtgtttgtctcttttccggctgagggtcatatagtttctgctctcgagtttgcgaagcttctaatcaaccgtgataaccgtctc 117  Q
    |||||||||||||||||||||| || ||||||| | |  | | ||| || ||||  | || ||||||| ||||||||||||||| |||||||||||||||    
T  39475461 gaagaaagcagaagtggtgtttatcccttttcccggtctgagccatctaatttccacacttgagtttgtgaagcttctaatcaatcgtgataaccgtctc 39475560  T
Q  118 cgaataactgttttagttatcaaattcccacacatcacagaaaccgatgtctacactaaatcccttcctatctccgattcactccacatcatcaaccttc 217  Q
    ||| ||||||||||||||||||||||||||||||| |||||||  |||||| |||||||||||||||||||||| || || ||| |||||||||||||||    
T  39475561 cgagtaactgttttagttatcaaattcccacacataacagaaaatgatgtcaacactaaatcccttcctatctcagaatctctcaacatcatcaaccttc 39475660  T
Q  218 cagaatgttctcttgccccaaacacagatcaaggttcctct---atgactgcgctcctcgaagctcagaaaccaaac 291  Q
    |||||  ||||||| |||||||||| |||| ||||| ||||   ||||| || ||||||||||||||||||||||||    
T  39475661 cagaagtttctcttcccccaaacaccgatccaggtttctcttccatgacagctctcctcgaagctcagaaaccaaac 39475737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 18 - 290
Target Start/End: Original strand, 39450955 - 39451230
Alignment:
Q  18 gaagaaagcagaagtggtgtttgtctcttttccggctgagggtcatatagtttctgctctcgagtttgcgaagcttctaatcaaccgtgataaccgtctc 117  Q
    |||||||||||||||||||||| || ||||||| | || | | ||| |||||||  | || || || ||||||||||||||||| |||||||||||||||    
T  39450955 gaagaaagcagaagtggtgtttatcccttttcctggtgtgagccatctagtttccacccttgaattcgcgaagcttctaatcaatcgtgataaccgtctc 39451054  T
Q  118 cgaataactgttttagttatcaaattcccacacatcacagaaaccgatgtctacactaaatcccttcctatctccgattcactccacatcatcaaccttc 217  Q
    ||| |||||||||||||||||||||||||||| ||  ||||||  |||||| |||||||||||||||||||||| ||||| ||| |||||||||||||||    
T  39451055 cgagtaactgttttagttatcaaattcccacatatatcagaaaatgatgtcaacactaaatcccttcctatctcagattctctcaacatcatcaaccttc 39451154  T
Q  218 cagaatgttctcttgccccaaacacagatcaaggtt---cctctatgactgcgctcctcgaagctcagaaaccaaa 290  Q
    |||||  ||||||| | ||||||||  ||| |||||   | || ||| |||| |||||||||||||||||||||||    
T  39451155 cagaagtttctcttcctccaaacaccaatccaggtttcgcttccatgcctgctctcctcgaagctcagaaaccaaa 39451230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 18 - 291
Target Start/End: Original strand, 39454594 - 39454867
Alignment:
Q  18 gaagaaagcagaagtggtgtttgtctcttttccggctgagggtcatatagtttctgctctcgagtttgcgaagcttctaatcaaccgtgataaccgtctc 117  Q
    |||||||||||||||||||||| || ||| ||| | ||  || ||| |||||||  | || ||||| ||||| |||||||||||||||||||||||||||    
T  39454594 gaagaaagcagaagtggtgtttatcccttctcctggtgttggccatttagtttccacccttgagttcgcgaaacttctaatcaaccgtgataaccgtctc 39454693  T
Q  118 cgaataactgttttagttatcaaattcccacacatcacagaaaccgatgtctacactaaatcccttcctatctccgattcactccacatcatcaaccttc 217  Q
    |||||||||||||||||  ||||||| ||||||  ||| ||||| ||||| |||| |||||| ||||| |||||||||||| ||| ||||||||||||||    
T  39454694 cgaataactgttttagtcctcaaatttccacacgccactgaaactgatgtatacagtaaatctcttccaatctccgattcaatccgcatcatcaaccttc 39454793  T
Q  218 cagaatgttctcttgccccaaacacagatcaaggttcctctatgactgcgctcctcgaagctcagaaaccaaac 291  Q
    ||||||| |||||| ||||||||||  ||| || |||||| ||| | || | ||| ||||||||||||||||||    
T  39454794 cagaatgctctcttcccccaaacactaatccagtttcctccatgtccgctcaccttgaagctcagaaaccaaac 39454867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 18 - 291
Target Start/End: Complemental strand, 39464748 - 39464475
Alignment:
Q  18 gaagaaagcagaagtggtgtttgtctcttttccggctgagggtcatatagtttctgctctcgagtttgcgaagcttctaatcaaccgtgataaccgtctc 117  Q
    ||||||||||||||| |||||| || ||||||| ||||  |||||| |||||||||| || |||||||||||||||||||||||||||||||||||||||    
T  39464748 gaagaaagcagaagtagtgtttatcccttttcccgctgtaggtcatctagtttctgcccttgagtttgcgaagcttctaatcaaccgtgataaccgtctc 39464649  T
Q  118 cgaataactgttttagttatcaaattcccacacatcacagaaaccgatgtctacactaaatcccttcctatctccgattcactccacatcatcaaccttc 217  Q
    ||||||||  | ||||| |||||| ||||||| | | ||||| |||||||||||||||||||| |||| || || ||||| ||  |  ||||||||||||    
T  39464648 cgaataaccatcttagtcatcaaactcccacaaaccgcagaatccgatgtctacactaaatccattcccatatctgattctcttaatgtcatcaaccttc 39464549  T
Q  218 cagaatgttctcttgccccaaacacagatcaaggttcctctatgactgcgctcctcgaagctcagaaaccaaac 291  Q
    |||||  ||||||| ||| || | | |||| ||||||| ||||||  || ||||| || ||||| |||||||||    
T  39464548 cagaagtttctcttccccaaacctctgatccaggttccgctatgaacgctctccttgatgctcacaaaccaaac 39464475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 39458508 - 39458286
Alignment:
Q  18 gaagaaagcagaagtggtgtttgtctcttttccggctgagggtcatatagtttctgctctcgagtttgcgaagcttctaatcaaccgtgataaccgtctc 117  Q
    ||||||||||||||||||| || ||||||  || | ||  |||||| |||||||  | ||||| ||||| ||||||||||||||||||||||||||||||    
T  39458508 gaagaaagcagaagtggtgattatctcttcacctggtgttggtcatctagtttccaccctcgaatttgcaaagcttctaatcaaccgtgataaccgtctc 39458409  T
Q  118 cgaataactgttttagttatcaaattcccacacatcacagaaaccgatgtctacactaaatcccttcctatctccgattcactccacatcatcaaccttc 217  Q
    ||||||||| | || || || ||||| |||||||  |||||||  ||||||||||||||||||||| | |||  |||||| ||  ||||  || ||||||    
T  39458408 cgaataactatcttggtcatgaaatttccacacacaacagaaatagatgtctacactaaatcccttgccatcgacgattctcttaacattgtcgaccttc 39458309  T
Q  218 cagaatgttctcttgccccaaac 240  Q
    |||||||||||||| ||||||||    
T  39458308 cagaatgttctcttcccccaaac 39458286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 18 - 242
Target Start/End: Original strand, 39486414 - 39486644
Alignment:
Q  18 gaagaaagcagaagtggtgtttgtctcttttccggctgagggtcatatagtttctgctctcgagtttgcgaagcttctaatcaaccgtgataaccgtctc 117  Q
    ||||||||||||||||||| || || |||  || | ||  |||||| |||||||  | || || ||||| ||||||||||||||||||||||||||||||    
T  39486414 gaagaaagcagaagtggtgattatcccttcacctggtgttggtcatctagtttccacccttgaatttgcaaagcttctaatcaaccgtgataaccgtctc 39486513  T
Q  118 cgaataactgttttagttatcaaattcccacacatcacaga-aac-----cgatgtctacactaaatcccttcctatctccgattcactccacatcatca 211  Q
    ||||||||  | || || |||||||||||||||| ||||||  ||     |||||||||||| ||||||||||| || |||||||| |||||  ||||||    
T  39486514 cgaataaccatcttggtcatcaaattcccacacaccacagatgacgatgtcgatgtctacacaaaatcccttcccatttccgattctctccaggtcatca 39486613  T
Q  212 accttccagaatgttctcttgccccaaacac 242  Q
    |||||||||||||||||||| ||||||||||    
T  39486614 accttccagaatgttctcttcccccaaacac 39486644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 18 - 291
Target Start/End: Complemental strand, 39470971 - 39470698
Alignment:
Q  18 gaagaaagcagaagtggtgtttgtctcttttccggctgagggtcatatagtttctgctctcgagtttgcgaagcttctaatcaaccgtgataaccgtctc 117  Q
    ||||||||  |||||||||||| || ||||||| ||||  |||||| ||||||||||  | ||||| || |||||||||||||||| ||||||||| |||    
T  39470971 gaagaaagtggaagtggtgtttatcccttttcccgctgtaggtcatctagtttctgccttagagttcgccaagcttctaatcaaccatgataaccgcctc 39470872  T
Q  118 cgaataactgttttagttatcaaattcccacacatcacagaaaccgatgtctacactaaatcccttcctatctccgattcactccacatcatcaaccttc 217  Q
     |||||||||| ||||| || |||||||||||||   ||||| | ||||||||| |||||||| |||| ||||| ||||| |||||  ||||||||||||    
T  39470871 tgaataactgtcttagtcatgaaattcccacacactgcagaatctgatgtctacgctaaatccattcccatctctgattctctccatgtcatcaaccttc 39470772  T
Q  218 cagaatgttctcttgccccaaacacagatcaaggttcctctatgactgcgctcctcgaagctcagaaaccaaac 291  Q
    |||||  |||| ||  ||||| | | |||| ||||||   |||||  || |||||||||||||| ||| |||||    
T  39470771 cagaagtttctgttctcccaacctctgatccaggttcggatatgaacgctctcctcgaagctcataaagcaaac 39470698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 18 - 241
Target Start/End: Original strand, 39460205 - 39460428
Alignment:
Q  18 gaagaaagcagaagtggtgtttgtctcttttccggctgagggtcatatagtttctgctctcgagtttgcgaagcttctaatcaaccgtgataaccgtctc 117  Q
    ||||||||||||||| |||||| || ||||||| | |  | | ||| ||| |||  | || ||||| || |||||||||| |||||||||||| || |||    
T  39460205 gaagaaagcagaagttgtgtttatcccttttcccggtccgagccatctagattccacccttgagttcgcaaagcttctaaccaaccgtgataagcgcctc 39460304  T
Q  118 cgaataactgttttagttatcaaattcccacacatcacagaaaccgatgtctacactaaatcccttcctatctccgattcactccacatcatcaaccttc 217  Q
    ||||| |||||  |||| || ||| ||||| |||   ||||| |||||||  |||||||||| ||||| |  || ||||| ||| |||||||||||||||    
T  39460305 cgaattactgtcctagtcatgaaactcccatacacatcagaatccgatgttaacactaaatcacttcccacttctgattctctcgacatcatcaaccttc 39460404  T
Q  218 cagaatgttctcttgccccaaaca 241  Q
    |||||  ||||||| |||||||||    
T  39460405 cagaagtttctcttcccccaaaca 39460428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 131
Target Start/End: Original strand, 39480328 - 39480441
Alignment:
Q  18 gaagaaagcagaagtggtgtttgtctcttttccggctgagggtcatatagtttctgctctcgagtttgcgaagcttctaatcaaccgtgataaccgtctc 117  Q
    ||||||||||||||||||| || || |||  || | ||  |||||| |||||||  | || || || |||||||||||||||||||||||||||||||||    
T  39480328 gaagaaagcagaagtggtgattatcccttcacctggtgttggtcatctagtttccacccttgaattcgcgaagcttctaatcaaccgtgataaccgtctc 39480427  T
Q  118 cgaataactgtttt 131  Q
    ||||||||||||||    
T  39480428 cgaataactgtttt 39480441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 119
Target Start/End: Complemental strand, 43312727 - 43312626
Alignment:
Q  18 gaagaaagcagaagtggtgtttgtctcttttccggctgagggtcatatagtttctgctctcgagtttgcgaagcttctaatcaaccgtgataaccgtctc 117  Q
    |||||||  ||||||||||||| || ||| ||| | || ||| ||| |||| ||  | || |||||||| |||||||| |||||||||||||||||||||    
T  43312727 gaagaaactagaagtggtgtttatcccttctccaggtgtgggacatttagtatccacccttgagtttgctaagcttctcatcaaccgtgataaccgtctc 43312628  T
Q  118 cg 119  Q
    ||    
T  43312627 cg 43312626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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