View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21053_low_2 (Length: 536)

Name: NF21053_low_2
Description: NF21053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21053_low_2
NF21053_low_2
[»] chr4 (12 HSPs)
chr4 (23-525)||(36388265-36388767)
chr4 (23-288)||(36434425-36434683)
chr4 (23-187)||(36374890-36375048)
chr4 (23-231)||(36427950-36428154)
chr4 (23-181)||(36418021-36418174)
chr4 (23-106)||(36398272-36398355)
chr4 (23-139)||(36405979-36406089)
chr4 (456-488)||(36388194-36388226)
chr4 (333-379)||(36374561-36374607)
chr4 (456-488)||(36412230-36412262)
chr4 (456-488)||(36417561-36417593)
chr4 (456-488)||(36426389-36426421)


Alignment Details
Target: chr4 (Bit Score: 499; Significance: 0; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 23 - 525
Target Start/End: Complemental strand, 36388767 - 36388265
Alignment:
Q  23 aagggtagatttggatgtgtgttgctttgagcaatattctcttctccagaggaatcttggtttaattgcatcatcaatttattttcatctgaagttacaa 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36388767 aagggtagatttggatgtgtgttgctttgagcaatattctcttctccagaggaatcttggtttaattgcatcatcaatttattttcatctgaagttacaa 36388668  T
Q  123 atggcatgaggtaagatttcaatcaactaacacattttaaagggtatatttctttttggctctaaataaaaacttagattatgcattttgcttgtcttgc 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36388667 atggcatgaggtaagatttcaatcaactaacacattttaaagggtatatttctttttggctctaaataaaaacttagattatgcattttgcttgtcttgc 36388568  T
Q  223 acgtgtaatgttgacccaaaaataataatattacagttattcaatcaaaacttagacattattagcacttgctgaagaaataggagagattgtacgcaag 322  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36388567 acgtgtaatgttgacccaaaaataataatattacagttattcaatcaaaacttagacattattagcacttgctgaagaaataggagagattgtacgcaag 36388468  T
Q  323 acattgatataccatatggcacaaaatccatgcaatagttgaacaccacaaaaagaatagctgacactaaacaaactaatatatgacactttctttaagt 422  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  36388467 acattgatataccatatggcacaaaatccatgcaatagttgaacaccacaaaaagaatagctgacattaaacaaactaatatatgacactttctttaagt 36388368  T
Q  423 cagaatgattgcaactagtaattaatataaagaacaattgcaattatagaagctacaagaattgcaattttatcctaaaaaataaatcacataccctccc 522  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36388367 cagaatgattgcaactagtaattaatataaagaacaattgcaattatagaagctacaagaattgcaattttatcctaaaaaataaatcacataccctccc 36388268  T
Q  523 ttt 525  Q
    |||    
T  36388267 ttt 36388265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 23 - 288
Target Start/End: Complemental strand, 36434683 - 36434425
Alignment:
Q  23 aagggtagatttggatgtgtgttgctttgagcaatattctcttctccagaggaatcttggtttaattgcatcatcaatttattttcatctgaagttacaa 122  Q
    |||||||||||||||||||||||||||||| ||   |||| ||||||| ||||||||||||||||||||  || || |||||      ||||||||||||    
T  36434683 aagggtagatttggatgtgtgttgctttgaacaccgttcttttctccaaaggaatcttggtttaattgccgcaccattttat------ctgaagttacaa 36434590  T
Q  123 atggcatgaggtaagatttcaatcaactaacacattttaaagggtatatttctttttggctct-aaataaaaacttagattatgcattttgcttgtcttg 221  Q
    |||||||||||||||||||||||||||| | ||||||| |||||| ||||||||||||||||| ||| | || |||||||||| ||||||||| |  ||     
T  36434589 atggcatgaggtaagatttcaatcaacttaaacattttgaagggtgtatttctttttggctctcaaaaagaatcttagattatacattttgctagattta 36434490  T
Q  222 cacgtgtaatgttgacccaaaaataataatattacagttattcaatcaaaacttagacattattagc 288  Q
    |||| |||||| |  | ||  |||||||  |||||| ||||||| ||||||||||||| ||||||||    
T  36434489 cacgcgtaatgatctctcattaataata--attacaattattcagtcaaaacttagactttattagc 36434425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 23 - 187
Target Start/End: Complemental strand, 36375048 - 36374890
Alignment:
Q  23 aagggtagatttggatgtgtgttgctttgagcaatattctcttctccagaggaatcttggtttaattgcatcatcaatttattttcatctgaagttacaa 122  Q
    ||||| |||||||||||||||||||||||||||  |||||||||| |||||||||||||||| ||||||  ||||| |||||      ||||||||||||    
T  36375048 aagggaagatttggatgtgtgttgctttgagcaccattctcttcttcagaggaatcttggttaaattgccgcatcattttat------ctgaagttacaa 36374955  T
Q  123 atggcatgaggtaagatttcaatcaactaacacattttaaagggtatatttctttttggctctaa 187  Q
    |||||| |||||||||||||||||||||  || ||||| |  |||||||||||||||||||||||    
T  36374954 atggcacgaggtaagatttcaatcaacttgcaaattttgataggtatatttctttttggctctaa 36374890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 23 - 231
Target Start/End: Complemental strand, 36428154 - 36427950
Alignment:
Q  23 aagggtagatttggatgtgtgttgctttgagcaatattctcttctccagaggaatcttggtttaattgcatcatcaatttattttcatctgaagttacaa 122  Q
    ||||||||||||||||||||||||||||| | |  ||||||||| ||||||||||||||||||  ||||  ||||| |||||      ||||||||||||    
T  36428154 aagggtagatttggatgtgtgttgctttgggtatcattctcttccccagaggaatcttggtttggttgcggcatcattttat------ctgaagttacaa 36428061  T
Q  123 atggcatgaggtaagatttcaatcaactaacacatttt-aaagggtatatttctttttggctct-aaataaaaacttagattatgcattttgcttgtctt 220  Q
    ||| ||| |||||||||||||||||||| | ||||||| | | ||||||||||||||||||||| ||| |||| |||| ||| | |||||| || || ||    
T  36428060 atgacataaggtaagatttcaatcaacttaaacattttgataaggtatatttctttttggctctcaaaaaaaatcttatattttacatttttctagtgtt 36427961  T
Q  221 gcacgtgtaat 231  Q
    | |||||||||    
T  36427960 gtacgtgtaat 36427950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 23 - 181
Target Start/End: Complemental strand, 36418174 - 36418021
Alignment:
Q  23 aagggtagatttggatgtgtgttgctttgagcaatattctcttctccagaggaatcttggtttaattgcatcatcaatttattttcatctgaagttacaa 122  Q
    ||||||||||||||||| ||||||||||| | |  ||||||||| ||||||||||||||||||  ||||  ||||| |||||      ||||||||||||    
T  36418174 aagggtagatttggatgcgtgttgctttgggtatcattctcttccccagaggaatcttggtttggttgcggcatcattttat------ctgaagttacaa 36418081  T
Q  123 atggcatgaggtaagatttcaatcaactaacacatttt-aaagggtatatttctttttgg 181  Q
    ||| ||| |||||||||||||||||||| | ||||||| | | |||||||||||||||||    
T  36418080 atgacataaggtaagatttcaatcaacttaaacattttgataaggtatatttctttttgg 36418021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 23 - 106
Target Start/End: Complemental strand, 36398355 - 36398272
Alignment:
Q  23 aagggtagatttggatgtgtgttgctttgagcaatattctcttctccagaggaatcttggtttaattgcatcatcaatttattt 106  Q
    ||||||||||||||||||||| |||||||||||  |||||||||| ||||| ||||||  ||| |||||  ||||| |||||||    
T  36398355 aagggtagatttggatgtgtggtgctttgagcatcattctcttctgcagagtaatcttcttttgattgctgcatcactttattt 36398272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 23 - 139
Target Start/End: Complemental strand, 36406089 - 36405979
Alignment:
Q  23 aagggtagatttggatgtgtgttgctttgagcaatattctcttctccagaggaatcttggtttaattgcatcatcaatttattttcatctgaagttacaa 122  Q
    |||||||||||||||||| ||||| || |||||  |||||||||| | ||||| || ||||||| ||||  |||||      ||| |||| |||||||||    
T  36406089 aagggtagatttggatgtctgttgtttggagcaccattctcttctactgaggagtcatggtttatttgccgcatca------ttttatctaaagttacaa 36405996  T
Q  123 atggcatgaggtaagat 139  Q
    ||| |||||||||||||    
T  36405995 atgacatgaggtaagat 36405979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 456 - 488
Target Start/End: Complemental strand, 36388226 - 36388194
Alignment:
Q  456 acaattgcaattatagaagctacaagaattgca 488  Q
    |||||||||||||||||||||||||||||||||    
T  36388226 acaattgcaattatagaagctacaagaattgca 36388194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 333 - 379
Target Start/End: Complemental strand, 36374607 - 36374561
Alignment:
Q  333 accatatggcacaaaatccatgcaatagttgaacaccacaaaaagaa 379  Q
    ||||||| ||||| | |||||| ||||||||||||||||||||||||    
T  36374607 accatattgcacacagtccatgtaatagttgaacaccacaaaaagaa 36374561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 456 - 488
Target Start/End: Complemental strand, 36412262 - 36412230
Alignment:
Q  456 acaattgcaattatagaagctacaagaattgca 488  Q
    |||||||||| ||||||||||||||||||||||    
T  36412262 acaattgcaactatagaagctacaagaattgca 36412230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 456 - 488
Target Start/End: Complemental strand, 36417593 - 36417561
Alignment:
Q  456 acaattgcaattatagaagctacaagaattgca 488  Q
    |||||||||| ||||||||||||||||||||||    
T  36417593 acaattgcaactatagaagctacaagaattgca 36417561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 456 - 488
Target Start/End: Complemental strand, 36426421 - 36426389
Alignment:
Q  456 acaattgcaattatagaagctacaagaattgca 488  Q
    |||||||||| ||||||||||||||||||||||    
T  36426421 acaattgcaactatagaagctacaagaattgca 36426389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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