View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21053_low_4 (Length: 504)
Name: NF21053_low_4
Description: NF21053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21053_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 117 - 499
Target Start/End: Complemental strand, 23323417 - 23323036
Alignment:
| Q |
117 |
aaatttatgtcgcgaaatctaattttcatctcttcgatgaaaattcaactttgattatccgtgactattttatcagtaggaatcgaatttgataccttga |
216 |
Q |
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| T |
23323417 |
aaatttatgtcgctaaatctaattttcatctcttcgatgaaaattcaactttgattatccgtgactattttatcagtaggaatcgaatttgataccttga |
23323318 |
T |
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| Q |
217 |
agtttgtttggttcaaacaggtagggaattatatatacttgtgggnnnnnnnnnnnnnnnnnnnnnacacttttgagtgtaaccagaatctaatctaaat |
316 |
Q |
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| T |
23323317 |
agtttgtttggttcaaacaggtagtgatttatatatacttttgtgttttttttttcttttttttt-acacttttgaatgtaaccagaatctaatcttaat |
23323219 |
T |
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| Q |
317 |
ttttaaacattcaatagttaataacgaagacaagacatggcaagttgtcaactaatacaatggagcatccttaatattatctccaaccgtgtatagaaat |
416 |
Q |
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| T |
23323218 |
ttttaaacattcaatagttaataccgaagacaagacatggcaagttgtcaactaatacaatggagcatccttaatattatctccaaccgtgtatagaaat |
23323119 |
T |
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| Q |
417 |
ttgttttttgctagcatagttattttcatataagatttagtgtgaatcaagaatcggcttaatgtttattgaaatgttctctg |
499 |
Q |
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| T |
23323118 |
ttgttttttgctagcatagttattttcatataagattttgtgtgaatcaagaatcggcttcatgtttattgaaatgttttctg |
23323036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 19 - 99
Target Start/End: Complemental strand, 23323523 - 23323443
Alignment:
| Q |
19 |
ggtgtaaatggaatggattggcatacactccttttggttattattgttgaaaatgttgagatatatctttgatcttgcaag |
99 |
Q |
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| T |
23323523 |
ggtgtaaatggaatggattggcatacactccttttggttattatggttgaaaatgttgagatatatctttgatcttgcaag |
23323443 |
T |
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