View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21053_low_7 (Length: 440)
Name: NF21053_low_7
Description: NF21053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21053_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 8 - 426
Target Start/End: Original strand, 15021663 - 15022080
Alignment:
| Q |
8 |
catcatcaactaccacaatgttacaataactacgtgttttcttcacttataaaagcacttttcattttgtgaaatcctaagagttatcaacttatcatta |
107 |
Q |
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| T |
15021663 |
catcatcaactaccaca-tgttacaataactacgtgttttcttcacttataaaagcacttttcattttgtgaaatcctaagagttatcaacttatcatta |
15021761 |
T |
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| Q |
108 |
ctcttaagaaaaggaaagagtttgattaaagatacaaaccaaaaccaaagccacattttcttcctttcaaaacaatcacacaaaaagctttggccttaat |
207 |
Q |
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| T |
15021762 |
ctattaagaaaaggaaagagtttgattaaagatacaaaccaaaaccaaagccacattttcttcctttcaaaacaatcacacaaaaagctttggccttaat |
15021861 |
T |
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| Q |
208 |
tcaaattctatactctttctttccattcatctttattcatggaatcctcaaattgggttctaaaacatgtattcattttactcattttcttccttattaa |
307 |
Q |
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| T |
15021862 |
tcaaattctatactctttctttccattcatttttattcatggaatcctcaaattgggttctaaaacatgtattcattttactctttttcttccttagtaa |
15021961 |
T |
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| Q |
308 |
cccttcaatttctacaactttcccttcctcaactttggaccttaccgttacacacactaaagccttacaccaaaattttactgcattatcagattttagg |
407 |
Q |
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| T |
15021962 |
cccttcaatgtcttcaactttcccttcctcaactttggaccttaccgttacacacactaaagccttacaccaaaattttactgcattatcagattttagg |
15022061 |
T |
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| Q |
408 |
ttgataaatagaagaattt |
426 |
Q |
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| T |
15022062 |
ttgataaatagaagaattt |
15022080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 308 - 426
Target Start/End: Original strand, 21362954 - 21363072
Alignment:
| Q |
308 |
cccttcaatttctacaactttcccttcctcaactttggaccttaccgttacacacactaaagccttacaccaaaattttactgcattatcagattttagg |
407 |
Q |
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||||||||| |||||||| |||||||||||| | ||||||||| |||| ||||||||| || || ||| |||| |||||||||||||| || ||||| |
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| T |
21362954 |
cccttcaatgtctacaacattcccttcctcacatgtggaccttatggttaaacacactaaggcattgcacgaaaactttactgcattatctgactttaga |
21363053 |
T |
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| Q |
408 |
ttgataaatagaagaattt |
426 |
Q |
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| T |
21363054 |
ttgataaatagacgaattt |
21363072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 237 - 273
Target Start/End: Original strand, 21362865 - 21362901
Alignment:
| Q |
237 |
tctttattcatggaatcctcaaattgggttctaaaac |
273 |
Q |
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| T |
21362865 |
tcttcattcatggaatcctcaaattgggttctcaaac |
21362901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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