View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21053_low_8 (Length: 396)
Name: NF21053_low_8
Description: NF21053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21053_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 369; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 18 - 386
Target Start/End: Original strand, 43017430 - 43017798
Alignment:
| Q |
18 |
agatgtaaccaagaatagaagaaaattggaagaggaaatggttttcttgtttgttgcttatatatcatttttgtgttttgcatgcacaattcagcttttg |
117 |
Q |
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| T |
43017430 |
agatgtaaccaagaatagaagaaaattggaagaggaaatggttttcttgtttgttgcttatatatcatttttgtgttttgcatgcacaattcagcttttg |
43017529 |
T |
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| Q |
118 |
aatgagtcacatatagggcaagacttattctaatattttatgaaaaattcagcttttgaaagagtcacttgcataaaacccgtttatcaggtgagaaaaa |
217 |
Q |
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| T |
43017530 |
aatgagtcacatatagggcaagacttattctaatattttatgaaaaattcagcttttgaaagagtcacttgcataaaacccgtttatcaggtgagaaaaa |
43017629 |
T |
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| Q |
218 |
taaggcaaggcctgtaaattttgggaaaaattaaacgttaaagaaaattatttttggatagccttgatttttattaacttttgaaataaaataactctaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43017630 |
taaggcaaggcctgtaaattttgggaaaaattaaacgttaaagaaaattatttttggatagccttgatttttattaacttttgaaataaaataactctaa |
43017729 |
T |
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| Q |
318 |
attcacaacattaagatcatagtataaacataactttgtgctataattccaaacagaatatttcatttt |
386 |
Q |
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| T |
43017730 |
attcacaacattaagatcatagtataaacataactttgtgctataattccaaacagaatatttcatttt |
43017798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 128 - 391
Target Start/End: Original strand, 35057433 - 35057680
Alignment:
| Q |
128 |
atatagggcaagacttattctaatattttatgaaaaattcagcttttgaaagagtcacttgcataaaacccgtttatcaggtgagaaaaataaggcaagg |
227 |
Q |
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| T |
35057433 |
atatagggcaagacatattctaatattttatgaaaaattcagcttttgaaagagtcacttgcataaaaaccgtttatgaggtgaaaaaaataaggcaagg |
35057532 |
T |
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| Q |
228 |
cctgtaaattttgggaaaaattaaacgttaaagaaaattatttttggatagccttga-tttttattaacttttgaaataaaataactctaaattcacaac |
326 |
Q |
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| T |
35057533 |
tcagtaaattttggga-----------------aacttcatttttggatggcgttaattttttattaacatttgaaataaaataactctaaaatcacgac |
35057615 |
T |
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| Q |
327 |
attaagatcatagtataaacataactttgtgctataattccaaacagaatatttcattttcttcg |
391 |
Q |
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| T |
35057616 |
attaagatcatagtaaaaacagaactttgtgctataattccagatataatatttcatttttttcg |
35057680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 35057181 - 35057230
Alignment:
| Q |
18 |
agatgtaaccaagaatagaagaaaattggaagaggaaatggttttcttgtttg |
70 |
Q |
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| T |
35057181 |
agatgtaaccaagaatagaa---aattggaagaggaaatggttttcttgtttg |
35057230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 318
Target Start/End: Original strand, 38569757 - 38569809
Alignment:
| Q |
267 |
atttttggatagccttgattttt-attaacttttgaaataaaataactctaaa |
318 |
Q |
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| T |
38569757 |
atttttggatagccttatttttttactaacttttgaaataaaataactctaaa |
38569809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 158 - 248
Target Start/End: Complemental strand, 14328987 - 14328897
Alignment:
| Q |
158 |
tgaaaaattcagcttttgaaagagtcacttgcataaaacccgtttatcaggtgagaaaaataaggcaaggcctgtaaattttgggaaaaat |
248 |
Q |
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| T |
14328987 |
tgaaaaattctgattttgaataagtcacttgcataaaaactgttttttaggtcagaaaaatgaggcaaggttagtaaactttggaaaaaat |
14328897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 158 - 248
Target Start/End: Complemental strand, 14421997 - 14421907
Alignment:
| Q |
158 |
tgaaaaattcagcttttgaaagagtcacttgcataaaacccgtttatcaggtgagaaaaataaggcaaggcctgtaaattttgggaaaaat |
248 |
Q |
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| T |
14421997 |
tgaaaaattctgattttgaataagtcacttgcataaaaactgttttttaggtcagaaaaatgaggcaaggttagtaaactttggaaaaaat |
14421907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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