View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21054_high_7 (Length: 238)
Name: NF21054_high_7
Description: NF21054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21054_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 141; Significance: 5e-74; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 1354159 - 1354383
Alignment:
| Q |
1 |
tttgcagccattcaaagttgcataagaaaaaggaaccaaattgatctggcttcttcttcagnnnnnnnn----tagagttaagttttgtaatgaattgga |
96 |
Q |
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| T |
1354159 |
tttgcagccattcaaagttgcataagaaaaatgaaccaaattgatctggcttcttcttcagaaaaaaaaaaaatagagttgagttttgtaatgaattgga |
1354258 |
T |
|
| Q |
97 |
taaaagatcatgaaaaaagagatgttgaaggtcttgaaacctgctaaaattcacccaatccagacaactatgtggttgtaatatgnnnnnnnnnaagatg |
196 |
Q |
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| T |
1354259 |
taaaagatcatgaaaaaagagaagttgaaggtcttgaaacctgctaaaattcacccaatccagacaattatgtggttgtaatatgtttttttttaagatg |
1354358 |
T |
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| Q |
197 |
tgtcagtgacctcttgaggtatagt |
221 |
Q |
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| T |
1354359 |
tgtcagtgacctcttgaggtatagt |
1354383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 24619147 - 24619194
Alignment:
| Q |
1 |
tttgcagccattcaaagttgcataagaaaaaggaaccaaattgatctg |
48 |
Q |
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| T |
24619147 |
tttgcagccattcaaagttgcattagaaaaaggaaccaaattgctctg |
24619194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 29051361 - 29051314
Alignment:
| Q |
1 |
tttgcagccattcaaagttgcataagaaaaaggaaccaaattgatctg |
48 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||| |||| |
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| T |
29051361 |
tttgcagccattcaaagttgcattagaaaaaggaaccaaattgttctg |
29051314 |
T |
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