View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21054_low_3 (Length: 421)

Name: NF21054_low_3
Description: NF21054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21054_low_3
NF21054_low_3
[»] chr7 (1 HSPs)
chr7 (1-410)||(42675203-42675612)
[»] chr2 (3 HSPs)
chr2 (64-191)||(29150422-29150550)
chr2 (121-253)||(9932757-9932890)
chr2 (166-229)||(28148474-28148538)
[»] chr8 (5 HSPs)
chr8 (101-186)||(2543089-2543173)
chr8 (8-253)||(14478017-14478266)
chr8 (101-191)||(2533524-2533613)
chr8 (9-61)||(2533002-2533054)
chr8 (9-56)||(2542993-2543040)
[»] chr5 (6 HSPs)
chr5 (104-253)||(5033520-5033670)
chr5 (9-188)||(17083256-17083434)
chr5 (110-191)||(33318246-33318331)
chr5 (120-191)||(38893820-38893891)
chr5 (129-191)||(12465705-12465767)
chr5 (193-234)||(13517254-13517295)
[»] chr4 (6 HSPs)
chr4 (127-253)||(15664361-15664488)
chr4 (105-191)||(30252139-30252225)
chr4 (161-253)||(29672254-29672347)
chr4 (162-237)||(51665833-51665909)
chr4 (71-253)||(28504000-28504183)
chr4 (31-87)||(31985951-31986007)
[»] chr1 (1 HSPs)
chr1 (121-253)||(47288811-47288943)


Alignment Details
Target: chr7 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 1 - 410
Target Start/End: Original strand, 42675203 - 42675612
Alignment:
Q  1 aggtggctaaatataaagaaataaaatgaaacatattttgagtgttgtttcgacaagtttttatgttagcaaatctccgtttgtagttgcttagcgatcg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42675203 aggtggctaaatataaagaaataaaatgaaacatattttgagtgttgtttcgacaagtttttatgttagcaaatctccgtttgtagttgcttagcgatcg 42675302  T
Q  101 gaagtgtcaaaataagatcaaatacttctatcaaacaagtagatatcttttgactttttaatttctactagtttttgacaaataaactcataggggtagt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42675303 gaagtgtcaaaataagatcaaatacttctatcaaacaagtagatatcttttgactttttaatttctactagtttttgacaaataaactcataggggtagt 42675402  T
Q  201 taaatatatatgattggggtagctaattataaaatatgctaacctattcaaattttatttnnnnnnnnttaaattaacttcggcacatagcttttgatta 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||| ||||||||||||||||||    
T  42675403 taaatatatatgattggggtagctaattataaaatatgctaacctattcaaattttatttaaaaaaaattaaattaacttcagcacatagcttttgatta 42675502  T
Q  301 tacatagctcgcctctgtcaaagtcagttatacatctatagaatcaactttggcacctccaaaagttattgacctttggaaatgggtaattgattttgca 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42675503 tacatagctcgcctctgtcaaagtcagttatacatctatagaatcaactttggcacctccaaaagttattgacctttggaaatgggtaattgattttgca 42675602  T
Q  401 ggactttctt 410  Q
    ||||||||||    
T  42675603 ggactttctt 42675612  T

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Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 64 - 191
Target Start/End: Complemental strand, 29150550 - 29150422
Alignment:
Q  64 tgttagcaaatctccgtttgtagttgctta-gcgatcggaagtgtcaaaataagatcaaatacttctatcaaacaagtagatatcttttgactttttaat 162  Q
    |||||||||| |||  |||||||||| ||| | ||||| ||||||||||||||||  |||||| |||||||||||||| |||||||||   ||||   ||    
T  29150550 tgttagcaaagctctctttgtagttgtttaagagatcgaaagtgtcaaaataagacgaaatacatctatcaaacaagtggatatctttaagctttcctat 29150451  T
Q  163 ttctactagtttttgacaaataaactcat 191  Q
    ||||||||||||||||||| |||||||||    
T  29150450 ttctactagtttttgacaattaaactcat 29150422  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 121 - 253
Target Start/End: Complemental strand, 9932890 - 9932757
Alignment:
Q  121 aatacttctatcaaacaagtagatatcttttgactttttaatttctactagtttttgacaaataaactcatagg-ggtagttaaatatatatgattgggg 219  Q
    ||||| || |||||||||||  |||||  |||||||||  ||||| |  ||| ||||| ||||||||||||  | ||||||||||| ||| | |||||||    
T  9932890 aatacatccatcaaacaagtgaatatcacttgacttttctatttccagaagtgtttgagaaataaactcatttgcggtagttaaatgtattttattgggg 9932791  T
Q  220 tagctaattataaaatatgctaacctattcaaat 253  Q
    || ||||||| ||||||||| ||  |||||||||    
T  9932790 taactaattacaaaatatgccaagttattcaaat 9932757  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 166 - 229
Target Start/End: Complemental strand, 28148538 - 28148474
Alignment:
Q  166 tactagtttttgacaaataaactcatagg-ggtagttaaatatatatgattggggtagctaatta 229  Q
    ||||||||||||| ||||||||| ||  | ||||| ||||||| ||| |||||||||||||||||    
T  28148538 tactagtttttgataaataaacttatttgcggtagctaaatatttattattggggtagctaatta 28148474  T

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Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 101 - 186
Target Start/End: Original strand, 2543089 - 2543173
Alignment:
Q  101 gaagtgtcaaaataagatcaaatacttctatcaaacaagtagatatcttttgactttttaatttctactagtttttgacaaataaa 186  Q
    |||||||||||||||||  |||||| |||||||||||||||||| |||||||||||| | |||| ||||||||||||| |||||||    
T  2543089 gaagtgtcaaaataagacaaaatacatctatcaaacaagtagatgtcttttgactttcttattt-tactagtttttgataaataaa 2543173  T

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Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 8 - 253
Target Start/End: Complemental strand, 14478266 - 14478017
Alignment:
Q  8 taaatataaagaaataaaatgaaacatattttgagtgttgtttcgacaagtttttatgttagcaaatctccgtttgtagttgctta-gcgatcggaagtg 106  Q
    ||||||||  ||||||||||||||||| ||| ||||||||||| | ||| |||| |||| |  |||  |  |||||| |||  ||| || |||||||||     
T  14478266 taaatatattgaaataaaatgaaacatgtttcgagtgttgttttggcaatttttcatgtgaataaaattttgtttgtggttatttaagcaatcggaagta 14478167  T
Q  107 tcaaaataagatcaaatacttctatcaaacaagtagatatcttttgactttt-taatttctactagtttttgacaaataaactcataggggtagtta--- 202  Q
    |||||||||||  | |||| | ||||||| || | |||||||||| |||||| || |||||| |||||||||||||||||||||||     ||||||       
T  14478166 tcaaaataagacgagatacatttatcaaataaatggatatcttttaacttttatattttctattagtttttgacaaataaactcat--ttatagttaccc 14478069  T
Q  203 -aatatatatgattggggtagctaattataaaatatgctaacctattcaaat 253  Q
     ||||| ||| ||| ||||||||||| |||||| || |||||||||||||||    
T  14478068 taatatgtattattagggtagctaatcataaaacatactaacctattcaaat 14478017  T

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Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 101 - 191
Target Start/End: Original strand, 2533524 - 2533613
Alignment:
Q  101 gaagtgtcaaaataagatcaaatacttctatcaaacaagtagatatcttttgactttttaatttctactagtttttgacaaataaactcat 191  Q
    ||||||||||||||| |  |||||| |||||||||||||||||| || ||||||||| | |||| ||||||||||||| ||||||| ||||    
T  2533524 gaagtgtcaaaataaaacaaaatacatctatcaaacaagtagatgtc-tttgactttcttatttttactagtttttgataaataaattcat 2533613  T

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Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 2533002 - 2533054
Alignment:
Q  9 aaatataaagaaataaaatgaaacatattttgagtgttgtttcgacaagtttt 61  Q
    ||||||||| |||||||||||||||||||||||||||||||| ||||| ||||    
T  2533002 aaatataaataaataaaatgaaacatattttgagtgttgtttagacaattttt 2533054  T

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Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 9 - 56
Target Start/End: Original strand, 2542993 - 2543040
Alignment:
Q  9 aaatataaagaaataaaatgaaacatattttgagtgttgtttcgacaa 56  Q
    ||||||||| ||||||||||||||||| |||||||||||| |||||||    
T  2542993 aaatataaataaataaaatgaaacataatttgagtgttgtgtcgacaa 2543040  T

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Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 104 - 253
Target Start/End: Complemental strand, 5033670 - 5033520
Alignment:
Q  104 gtgtcaaaataagatcaaatacttctatcaaacaagtagatatctt-ttgactttttaatttctactagtttttgacaaataaactcatagg-ggtagtt 201  Q
    ||||||||||||||| |||||| ||||| ||||| ||  ||||||| || || ||||||| | |||||  ||| |||||||||||||||  | |||| ||    
T  5033670 gtgtcaaaataagat-aaatacatctatgaaacaggtgaatatcttattaacattttaatatatactaaatttcgacaaataaactcatttgtggtattt 5033572  T
Q  202 aaatatatatgattggggtagctaattataaaatatgctaacctattcaaat 253  Q
    |||||||||| ||||||||||||| |||| |||||| ||||||| |||||||    
T  5033571 aaatatatattattggggtagctatttattaaatatactaacctgttcaaat 5033520  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 9 - 188
Target Start/End: Original strand, 17083256 - 17083434
Alignment:
Q  9 aaatataaagaaataaaatgaaacatattttgagtgttgtttcgacaagtttttatgttagcaaatctccgtttgtagttgcttagcgatcggaagtgtc 108  Q
    |||||| || ||||||||| ||| |||||||||||||||  | ||||| ||||  ||||||  || |||  |||||||||||||| |  | | ||||||     
T  17083256 aaatattaaaaaataaaataaaatatattttgagtgttgccttgacaatttttattgttagtcaaactctctttgtagttgcttaaccgttgaaagtgta 17083355  T
Q  109 aaaataagatcaaatacttctatcaaacaagtagatatcttttgactttttaatttctactagtttttgacaaataaact 188  Q
    ||||||| |  |||||  | ||||| ||||||   |||||||||| ||||| ||||| | ||||||||||||||||||||    
T  17083356 aaaataacacgaaataaatgtatcatacaagtgagtatcttttga-ttttttatttccagtagtttttgacaaataaact 17083434  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 191
Target Start/End: Original strand, 33318246 - 33318331
Alignment:
Q  110 aaataagatcaaatacttctatcaaacaagtagata----tcttttgactttttaatttctactagtttttgacaaataaactcat 191  Q
    |||||| || |||||||||||||| |||||| ||||    | |||||||||| | ||||| |||||||||||||||||||| ||||    
T  33318246 aaataaaatgaaatacttctatcacacaagtggatacatattttttgactttcttatttcaactagtttttgacaaataaattcat 33318331  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 120 - 191
Target Start/End: Original strand, 38893820 - 38893891
Alignment:
Q  120 aaatacttctatcaaacaagtagatatcttttgactttttaatttctactagtttttgacaaataaactcat 191  Q
    |||||| | |||||||||||| | ||| ||||| ||||   ||||||||| |||||||||||||||||||||    
T  38893820 aaatacatttatcaaacaagtgggtattttttggctttcccatttctactcgtttttgacaaataaactcat 38893891  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 129 - 191
Target Start/End: Original strand, 12465705 - 12465767
Alignment:
Q  129 tatcaaacaagtagatatcttttgactttttaatttctactagtttttgacaaataaactcat 191  Q
    ||||| ||||||| |||| |||||||||| | |||  ||||||||||||| ||||||||||||    
T  12465705 tatcatacaagtatatattttttgactttcttattcttactagtttttgataaataaactcat 12465767  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 234
Target Start/End: Complemental strand, 13517295 - 13517254
Alignment:
Q  193 ggggtagttaaatatatatgattggggtagctaattataaaa 234  Q
    ||||||||||||||||||| ||| |||||||||| |||||||    
T  13517295 ggggtagttaaatatatattattagggtagctaaatataaaa 13517254  T

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Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 127 - 253
Target Start/End: Original strand, 15664361 - 15664488
Alignment:
Q  127 tctatcaaacaagtagatatcttttgactttttaatttctactagtttttgacaaataaactca-taggggtagttaaatatatatgattggggtagcta 225  Q
    ||||||||||||||| ||||||||||| |||   ||||||||||| |||||||||||||||||| | | ||||| ||||||||| | |||| ||||||||    
T  15664361 tctatcaaacaagtaaatatcttttgattttcctatttctactagcttttgacaaataaactcatttgcggtagctaaatatattttattgtggtagcta 15664460  T
Q  226 attataaaatatgctaacctattcaaat 253  Q
    | || |||||| | |||  |||||||||    
T  15664461 actacaaaatagggtaagttattcaaat 15664488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 105 - 191
Target Start/End: Complemental strand, 30252225 - 30252139
Alignment:
Q  105 tgtcaaaataagatcaaatacttctatcaaacaagtagatatcttttgactttttaatttctactagtttttgacaaataaactcat 191  Q
    |||||||||||||  |||||| ||||| |||||||| | ||||| || || |||| |||||||||||||||  ||||||||||||||    
T  30252225 tgtcaaaataagagaaaatacatctataaaacaagtgggtatctattaacatttttatttctactagttttcaacaaataaactcat 30252139  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 161 - 253
Target Start/End: Original strand, 29672254 - 29672347
Alignment:
Q  161 atttctactagtttttgacaaataaactcatagg-ggtagttaaatatatatgattggggtagctaattataaaatatgctaacctattcaaat 253  Q
    ||||||| |||||||| ||||||||||||||  | |||||   ||||||||| ||||||||||||||||| ||||||| |||||  ||||||||    
T  29672254 atttctaatagtttttaacaaataaactcatttgtggtagcataatatatattattggggtagctaattacaaaatatactaactaattcaaat 29672347  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 162 - 237
Target Start/End: Original strand, 51665833 - 51665909
Alignment:
Q  162 tttctactagtttttgacaaataaactcata-ggggtagttaaatatatatgattggggtagctaattataaaatat 237  Q
    ||||||||| ||||||||| ||||||| ||  ||||||||||||||||||| ||||| || ||||| ||||||||||    
T  51665833 tttctactaatttttgacagataaacttatttggggtagttaaatatatattattggagtggctaaatataaaatat 51665909  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 71 - 253
Target Start/End: Original strand, 28504000 - 28504183
Alignment:
Q  71 aaatctccgtttgtagttgcttagcgatcggaagtgtcaaaataagatcaaatacttctatcaaacaagtagatatcttttgactttttaatttctacta 170  Q
    |||||||  |||||| |||||||  ||||  |||| |||||||||| | | || | || || |||||||||||||||  || |  |||||||||||||||    
T  28504000 aaatctctttttgtaattgcttaatgatcaaaagtttcaaaataaggtgatattcatccatgaaacaagtagatatccattaatgttttaatttctacta 28504099  T
Q  171 gtttttgacaaataaactca-taggggtagttaaatatatatgattggggtagctaattataaaatatgctaacctattcaaat 253  Q
     ||||| ||||||||||| | |   ||| ||||||||||||| |||||  ||| ||||||  |||||| ||| |||||||||||    
T  28504100 attttttacaaataaacttacttatggtggttaaatatatattattggaatagttaattactaaatatactaccctattcaaat 28504183  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 31 - 87
Target Start/End: Complemental strand, 31986007 - 31985951
Alignment:
Q  31 acatattttgagtgttgtttcgacaagtttttatgttagcaaatctccgtttgtagt 87  Q
    ||||||||| | |||||||| ||||| |||||||||||  ||| |||||||||||||    
T  31986007 acatattttaattgttgttttgacaattttttatgttaataaagctccgtttgtagt 31985951  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 121 - 253
Target Start/End: Complemental strand, 47288943 - 47288811
Alignment:
Q  121 aatacttctatcaaacaagtagatatcttttgactttttaatttctactagtttttgacaaataaactca-taggggtagttaaatatatatgattgggg 219  Q
    ||||| |||||||||||| |  ||||||||||||||| | | |||||||| |||||||||||||| | || | | ||||| ||||||||| | ||| |||    
T  47288943 aatacatctatcaaacaaattaatatcttttgactttctcacttctactaatttttgacaaataagcacatttgtggtagctaaatatattttatt-ggg 47288845  T
Q  220 tagctaattataaaatatgctaacctattcaaat 253  Q
    |||||||||| || |||||| ||  |||||||||    
T  47288844 tagctaattacaagatatgccaaattattcaaat 47288811  T

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