View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21054_low_5 (Length: 369)
Name: NF21054_low_5
Description: NF21054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21054_low_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 351; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 1 - 355
Target Start/End: Complemental strand, 47080945 - 47080591
Alignment:
| Q |
1 |
ttattgcacttccaacatcagcagtgatgctgtctgcaagtgttatcctggtttcatcctttccgagaccaaaagtaatcctaaattgcctatggactgc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47080945 |
ttattgcacttccaacatcagcagtgatgctgtctgcaagtgttatcctggtttcatcctttccgagaccaaaagtaatcctaaattgcctatggactgc |
47080846 |
T |
|
| Q |
101 |
gtacagaaacatagcaaagatgactgtgaaagcagcgaaggcacggcgttatataattatactaactttaaaaatatgtcttggggtgatattccatatt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
47080845 |
gtacagaaacatagcaaagatgactgtgaaagcagcgaaggcacggcgttatataattatactaactttaagaatatgtcttggggtgatattccatatt |
47080746 |
T |
|
| Q |
201 |
ctgttatacctgtgatgaacatgaaaacttgtgagcaggcttgccaagaagattgtgtttgcgggggagcaatatatacaaacactagctgcaataaata |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47080745 |
ctgttatacctgtgatgaacatgaaaacttgtgagcaggcttgccaagaagattgtgtttgcgggggagcaatatatacaaacactagctgcaataaata |
47080646 |
T |
|
| Q |
301 |
taggcttccacttatttatggcagggttcaaaatgattcttccaccgtgtctgtg |
355 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47080645 |
taggcttccacttatttatggcagggttcaaaatgattcttccaccgtgtctgtg |
47080591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 87 - 342
Target Start/End: Original strand, 47060889 - 47061150
Alignment:
| Q |
87 |
tgcctatggactgcgtacagaaacatagcaaagatgactgtgaaagcagcgaaggc---acggcgttatataattatactaactttaaaaatatgtcttg |
183 |
Q |
| |
|
||||||| ||||||||||||| ||||||||||||||||||||||||| |||| | ||| ||| ||||||| |||| ||||| | |||||| ||| |
|
|
| T |
47060889 |
tgcctatagactgcgtacagacgcatagcaaagatgactgtgaaagcattgaagaccgaacgttgttgtataattttactcactttgagaatatgcattg |
47060988 |
T |
|
| Q |
184 |
gggtgatattccatattctgttatacctgtgatga---acatgaaaacttgtgagcaggcttgccaagaagattgtgtttgcgggggagcaatatataca |
280 |
Q |
| |
|
||| ||| ||||||||||||||||||| ||| ||| | ||| | ||||||||| ||||||||| | ||||||||||||| ||||||||||||||||| |
|
|
| T |
47060989 |
gggggatgttccatattctgttatacccgtgttgattgatatggatacttgtgagaaggcttgccgacaagattgtgtttgtgggggagcaatatatacc |
47061088 |
T |
|
| Q |
281 |
aacactagctgcaataaatataggcttccacttatttatggcagggttcaaaatgattcttc |
342 |
Q |
| |
|
||| ||||||||||||||||||||||||||||| | |||| | |||||||||||||||| |
|
|
| T |
47061089 |
aacggcagctgcaataaatataggcttccacttatacacggcaagtttcaaaatgattcttc |
47061150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 64
Target Start/End: Original strand, 47060835 - 47060875
Alignment:
| Q |
24 |
gtgatgctgtctgcaagtgttatcctggtttcatcctttcc |
64 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||| |||| |
|
|
| T |
47060835 |
gtgatgctgtatgcaaatgttatcctggtttcatcccttcc |
47060875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University