View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21055_high_11 (Length: 215)
Name: NF21055_high_11
Description: NF21055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21055_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 166; Significance: 5e-89; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 18 - 200
Target Start/End: Original strand, 5687035 - 5687219
Alignment:
| Q |
18 |
gtaagaagtccaattgcagtgtcttttcaatgaaaaaacattatagtattcttgtactcattttcttatattgattagtttattttagtgtttgttcaaa |
117 |
Q |
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| T |
5687035 |
gtaagaagtccaattgcagtgtcttttcaatgaaaaaacattatagtattcttgtactcattttcttatattgattagtttattttagtgttttttcaaa |
5687134 |
T |
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| Q |
118 |
aggacaaactattagagagagtgagagacaggatcacaataaatagataagataaa--tattcttagaaatggtaggaccagatt |
200 |
Q |
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| T |
5687135 |
aggacaaactattagagagagtgagagacaggatcacaataaatagataagataaatgtattcttggaaatggtaggaccagatt |
5687219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 18 - 199
Target Start/End: Original strand, 5699240 - 5699440
Alignment:
| Q |
18 |
gtaagaagtccaattgcagtgtcttttcaatgaaaaaacattatagtattcttgtactcattttcttatattgattagtttattttagtgtttgtt---- |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |||| ||||||||||| |
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| T |
5699240 |
gtaagaagtccaattgcagtgtcttttcaatgaaaaaacattatagtattcttgtactcattttcttacgttaattaattta--ctagtgtttgtttgtc |
5699337 |
T |
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| Q |
114 |
caaaaggacaaac----------tattagagagagtgagagacaggatcacaataa----atagataagataaatattcttagaa---atggtaggacca |
196 |
Q |
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| T |
5699338 |
ctaaaggacaaactattggagattatttgagagagtgagagataggatcacaataaatagatagataggataaatattattagaaatcatggtaggacca |
5699437 |
T |
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| Q |
197 |
gat |
199 |
Q |
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||| |
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| T |
5699438 |
gat |
5699440 |
T |
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