View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21055_high_4 (Length: 358)

Name: NF21055_high_4
Description: NF21055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21055_high_4
NF21055_high_4
[»] chr2 (2 HSPs)
chr2 (17-358)||(44565907-44566229)
chr2 (165-358)||(36032949-36033142)
[»] chr4 (1 HSPs)
chr4 (224-358)||(20121896-20122030)


Alignment Details
Target: chr2 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 17 - 358
Target Start/End: Original strand, 44565907 - 44566229
Alignment:
Q  17 gaagaataatgttagtaaatacaacatggaaaaatagttttacatagtgcctttaagtatttttggggttgacctggcaatttctcacgtgcattgtgac 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  44565907 gaagaataatgttagtaaatacaacatggaaaaatagttttacatagtgcctttaagtatttttggggttgacctggcaatttctcacgtgcattgtgat 44566006  T
Q  117 atgatggtatcaaccggacgaatattgcgggcctatacaattttcctttcaccatgatttgatcactttagtgtctgtaataaaagtaatatgtttgaca 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  44566007 atgatggtatcaaccggacgaatattgcgggcctatacaattttcctttcaccatgatatgatcactttagtgtctgtaataaaagtaatatgtttgaca 44566106  T
Q  217 tctcaattttcaggtttatcaatcccgtggttgtatcctcaaccattgctgcagttggactttcattctatagctatggttttcctctagttggcacgtg 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                   |||||||||||||||||||||    
T  44566107 tctcaattttcaggtttatcaatcccgtggttgtatcctcaaccattgctgcagttggac-------------------ttttcctctagttggcacgtg 44566187  T
Q  317 tcttgagatcggtgcagtacagatattagtgtttattgtttt 358  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  44566188 tcttgagatcggtgcagtacagatattagtgtttattgtttt 44566229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 165 - 358
Target Start/End: Complemental strand, 36033142 - 36032949
Alignment:
Q  165 tcaccatgatttgatcactttagtgtctgtaataaaagtaatatgtttgacatctcaattttcaggtttatcaatcccgtggttgtatcctcaaccattg 264  Q
    ||||||| ||||||||||| | | || || ||| ||||||||||||||  ||||||||||||||||||||||||||| |||||||||||| |||||||||    
T  36033142 tcaccataatttgatcactgttgggtttgaaatcaaagtaatatgttttgcatctcaattttcaggtttatcaatcctgtggttgtatccccaaccattg 36033043  T
Q  265 ctgcagttggactttcattctatagctatggttttcctctagttggcacgtgtcttgagatcggtgcagtacagatattagtgtttattgtttt 358  Q
    ||||||||||||||||||| ||| | |||||||||||||| |||||||| ||| ||||||| |||||| |||| ||||||||| ||||||||||    
T  36033042 ctgcagttggactttcattttatggttatggttttcctcttgttggcacatgtattgagattggtgcaatacaaatattagtggttattgtttt 36032949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 224 - 358
Target Start/End: Original strand, 20121896 - 20122030
Alignment:
Q  224 tttcaggtttatcaatcccgtggttgtatcctcaaccattgctgcagttggactttcattctatagctatggttttcctctagttggcacgtgtcttgag 323  Q
    ||||||| | |||||||| || ||||||||| |||| ||||||||||||||||||||||| |  || || || || ||  |||| || || |||||||||    
T  20121896 tttcagggtgatcaatcctgtagttgtatccccaactattgctgcagttggactttcatttttcagttacggattcccattagtgggtacatgtcttgag 20121995  T
Q  324 atcggtgcagtacagatattagtgtttattgtttt 358  Q
    || ||||||||||||||||||||| ||||||||||    
T  20121996 attggtgcagtacagatattagtggttattgtttt 20122030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University