View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21055_low_1 (Length: 772)
Name: NF21055_low_1
Description: NF21055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21055_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 143; Significance: 1e-74; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 12 - 166
Target Start/End: Complemental strand, 20304184 - 20304030
Alignment:
| Q |
12 |
tagcaaagggagagataggagagaaatgctcaatttcttcagtttggtggaggagagaagttaaagagagagaaatatgagagataaaatatcacctttt |
111 |
Q |
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| T |
20304184 |
tagcaaagagagagataggagagaaatgctcaatttcttcggtttggtggaggagagaagttaaagagagagaaatatgagagataaaatatcacctttt |
20304085 |
T |
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| Q |
112 |
tgatttctctgttggacagcgaagaaaatggagagaggggtaacatatactgata |
166 |
Q |
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| T |
20304084 |
tgatttctctgctggacagcgaagaaaatggagagaggggtaacatatactgata |
20304030 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 53 - 124
Target Start/End: Original strand, 47926211 - 47926282
Alignment:
| Q |
53 |
gtttggtggaggagagaagttaaagagagagaaatatgagagataaaatatcacctttttgatttctctgtt |
124 |
Q |
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| T |
47926211 |
gtttggtggaggagagaagttaaggagagggaaataggagagataaaaaatcacatttttgctttctctgtt |
47926282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 121
Target Start/End: Complemental strand, 19728366 - 19728289
Alignment:
| Q |
44 |
atttcttcagtttggtggaggagagaagttaaagagagagaaatatgagagataaaatatcacctttttgatttctct |
121 |
Q |
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| T |
19728366 |
atttcttctgtttggttaaggagagaagtcaaagagagagaaataggagagaccaaattttaactttttggtttctct |
19728289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 53 - 120
Target Start/End: Complemental strand, 2022071 - 2022002
Alignment:
| Q |
53 |
gtttggtggaggagagaagttaa--agagagagaaatatgagagataaaatatcacctttttgatttctc |
120 |
Q |
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| T |
2022071 |
gtttggtggaggagagaagttaaggagagagagagataggagagataaaaaaccacctttttgctttctc |
2022002 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 61 - 120
Target Start/End: Complemental strand, 39040376 - 39040317
Alignment:
| Q |
61 |
gaggagagaagttaaagagagagaaatatgagagataaaatatcacctttttgatttctc |
120 |
Q |
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| T |
39040376 |
gaggagagaagtcaaggagagagaaataggagagataaaaaatcaccttttagctttctc |
39040317 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 49
Target Start/End: Original strand, 31837396 - 31837433
Alignment:
| Q |
12 |
tagcaaagggagagataggagagaaatgctcaatttct |
49 |
Q |
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| T |
31837396 |
tagcaaagagagagataggagagaaatgctcaatttct |
31837433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 53 - 95
Target Start/End: Complemental strand, 28441125 - 28441083
Alignment:
| Q |
53 |
gtttggtggaggagagaagttaaagagagagaaatatgagaga |
95 |
Q |
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| T |
28441125 |
gtttggtgaagaagagaagttaaagagagagaaataagagaga |
28441083 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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