View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21055_low_12 (Length: 237)
Name: NF21055_low_12
Description: NF21055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21055_low_12 |
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| [»] scaffold0003 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 142566 - 142346
Alignment:
| Q |
1 |
tttcttcaagaaaagctttatattgtaccaaagctaaagtttgtttattagataaacgtttccaaaatgcatgaaaatacctttgtttctgtttctcttg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
142566 |
tttcttcaagaaaagctttatattgtaccaaagctaaagtttgtttattagataaacgtttccaaaatgcatgaaaatacctttgtttctgtttctcttg |
142467 |
T |
|
| Q |
101 |
atttagttgtggattttgactgtaaaaaggacctattgagataaactgtggtgtataagcatcttcattcaacttcagaacatggtgaggaaccttgtaa |
200 |
Q |
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| T |
142466 |
atttagttgtggattttgactgtgaaaaggacctattgagataaactttggtgtataagcatcttcattcaacttcagaacatggtgaggaaccttgtaa |
142367 |
T |
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| Q |
201 |
atgcaacatttttcatgtaac |
221 |
Q |
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||||||||||||||||||||| |
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| T |
142366 |
atgcaacatttttcatgtaac |
142346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 45961106 - 45961326
Alignment:
| Q |
1 |
tttcttcaagaaaagctttatattgtaccaaagctaaagtttgtttattagataaacgtttccaaaatgcatgaaaatacctttgtttctgtttctcttg |
100 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||| || ||||||||||||||||||||||| || |||||||| ||||||||||| |
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| T |
45961106 |
tttcttcaagaaaagctttatattctaccaaagctaaagtttgtttatttgacaaacgtttccaaaatgcatgaaagtagctttgtttttgtttctcttg |
45961205 |
T |
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| Q |
101 |
atttagttgtggattttgactgtaaaaaggacctattgagataaactgtggtgtataagcatcttcattcaacttcagaacatggtgaggaaccttgtaa |
200 |
Q |
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| T |
45961206 |
atttacttctggattatgactgtgaaaaggacctattgagataaactttggtgtataagcatcttcattcaacttcagaagatggtgaggaaccttgtaa |
45961305 |
T |
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| Q |
201 |
atgcaacatttttcatgtaac |
221 |
Q |
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| T |
45961306 |
atgcaacatttttcatgtaac |
45961326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 107; Significance: 9e-54; HSPs: 2)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 71 - 221
Target Start/End: Complemental strand, 292669 - 292519
Alignment:
| Q |
71 |
atgaaaatacctttgtttctgtttctcttgatttagttgtggattttgactgtaaaaaggacctattgagataaactgtggtgtataagcatcttcattc |
170 |
Q |
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|||||| ||| ||||||||||||||||||||||||||| || || ||||||| || |||||||||||||||||||| |||||| ||||||||||||||| |
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| T |
292669 |
atgaaagtacttttgtttctgtttctcttgatttagttcagggttatgactgtgaagaggacctattgagataaactttggtgtgtaagcatcttcattc |
292570 |
T |
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| Q |
171 |
aacttcagaacatggtgaggaaccttgtaaatgcaacatttttcatgtaac |
221 |
Q |
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| T |
292569 |
aacttcagaagatggtgaggaaccttgtaaatgcaacatttttcatgtaac |
292519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 297771 - 297724
Alignment:
| Q |
1 |
tttcttcaagaaaagctttatattgtaccaaagctaaagtttgtttat |
48 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
297771 |
tttcttcaagaaaagctttatattgtaccaaagctaaagtttgtttat |
297724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 97
Target Start/End: Original strand, 27123873 - 27123928
Alignment:
| Q |
42 |
tgtttattagataaacgtttccaaaatgcatgaaaatacctttgtttctgtttctc |
97 |
Q |
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| T |
27123873 |
tgtttatttgataaacatttccaaaatgaatgaaagtacttttgtttgtgtttctc |
27123928 |
T |
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