View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21055_low_14 (Length: 215)
Name: NF21055_low_14
Description: NF21055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21055_low_14 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 166; Significance: 5e-89; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 18 - 200
Target Start/End: Original strand, 5687035 - 5687219
Alignment:
| Q |
18 |
gtaagaagtccaattgcagtgtcttttcaatgaaaaaacattatagtattcttgtactcattttcttatattgattagtttattttagtgtttgttcaaa |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
5687035 |
gtaagaagtccaattgcagtgtcttttcaatgaaaaaacattatagtattcttgtactcattttcttatattgattagtttattttagtgttttttcaaa |
5687134 |
T |
|
| Q |
118 |
aggacaaactattagagagagtgagagacaggatcacaataaatagataagataaa--tattcttagaaatggtaggaccagatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
5687135 |
aggacaaactattagagagagtgagagacaggatcacaataaatagataagataaatgtattcttggaaatggtaggaccagatt |
5687219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 18 - 199
Target Start/End: Original strand, 5699240 - 5699440
Alignment:
| Q |
18 |
gtaagaagtccaattgcagtgtcttttcaatgaaaaaacattatagtattcttgtactcattttcttatattgattagtttattttagtgtttgtt---- |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |||| ||||||||||| |
|
|
| T |
5699240 |
gtaagaagtccaattgcagtgtcttttcaatgaaaaaacattatagtattcttgtactcattttcttacgttaattaattta--ctagtgtttgtttgtc |
5699337 |
T |
|
| Q |
114 |
caaaaggacaaac----------tattagagagagtgagagacaggatcacaataa----atagataagataaatattcttagaa---atggtaggacca |
196 |
Q |
| |
|
| ||||||||||| |||| |||||||||||||| ||||||||||||| ||||||| |||||||||| |||||| |||||||||||| |
|
|
| T |
5699338 |
ctaaaggacaaactattggagattatttgagagagtgagagataggatcacaataaatagatagataggataaatattattagaaatcatggtaggacca |
5699437 |
T |
|
| Q |
197 |
gat |
199 |
Q |
| |
|
||| |
|
|
| T |
5699438 |
gat |
5699440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University