View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21055_low_2 (Length: 519)
Name: NF21055_low_2
Description: NF21055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21055_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 421; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 16 - 448
Target Start/End: Original strand, 130718 - 131149
Alignment:
| Q |
16 |
caattaacaattgatatggtggcacattgtcactatttcacatcttagttttaatagaatgatagatagataaatagaaagacagaaagtcatgccaaca |
115 |
Q |
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| T |
130718 |
caattaacaattgatatggtggcacattgtcactatttcacatcttagttttaatagaatgatagatagataaatagaaagacagaaagtcatgccaaca |
130817 |
T |
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| Q |
116 |
aattaaaaatggttttttatgcattacaaaataaaaacttagacaaatgctctaaggcagaaatctgggcaaagcttgtaaaaactaatcatcaccgaaa |
215 |
Q |
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| T |
130818 |
aattaaaaatggttttttatgcattacaaaataaaaacttagacaaatgctctaaggcagaaatctgggcaaagcttgtaaaaactaatcatcaccgaaa |
130917 |
T |
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| Q |
216 |
gcatgatggttctgagaaagtagcataatgtcacagtactcagtatggcggaggatagaatcctgaaagaaagaaaaaatgtgattagaaattaagcaag |
315 |
Q |
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| T |
130918 |
gcatgatggttctgagaaagtagcataatgtcacagtactcagtatggcggaggatagaatcctgaaagaaagaaaaaatgtga-tagaaattaagcaag |
131016 |
T |
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| Q |
316 |
agatgaaaattgaaatggttggcagagagacaagaattacttaccagcgtttggaggataacctggaggtggagggtatgaaggcggtggataggctgaa |
415 |
Q |
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| T |
131017 |
agatgaaaattgaaatggttggcagagagacaagaattacttaccagcgtttggaggataacctgtaggtggagggtatgaaggcggtggataggctgaa |
131116 |
T |
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| Q |
416 |
gatggaggataagagtggggaggagggtatggc |
448 |
Q |
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| T |
131117 |
gatggaggataagagtggggaggagggtatggc |
131149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 319 - 444
Target Start/End: Complemental strand, 162028 - 161903
Alignment:
| Q |
319 |
tgaaaattgaaatggttggcagagagacaagaattacttaccagcgtttggaggataacctggaggtggagggtatgaaggcggtggataggctgaagat |
418 |
Q |
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| T |
162028 |
tgaaaattgaaatggttggcagagaaacaagaattacttaccagtgtttggaggataacctgcaggtggagggtatgatggtggtggataagctgaagat |
161929 |
T |
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| Q |
419 |
ggaggataagagtggggaggagggta |
444 |
Q |
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| T |
161928 |
ggcggataagagtggggaggagggta |
161903 |
T |
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