View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21055_low_3 (Length: 499)
Name: NF21055_low_3
Description: NF21055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21055_low_3 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 367; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 62 - 483
Target Start/End: Complemental strand, 42855203 - 42854781
Alignment:
| Q |
62 |
agaaaatttaaattaaggaagacttaaatccctcccaatagtgnnnnnnnntgaaaatgagatccagaaaaaaccatagtgagagaagcttttaacatgc |
161 |
Q |
| |
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|||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42855203 |
agaaaattaaaattaaagaagacttaaatccctcccaatagtgaaaaaaaatgaaaatgagatccagaaaaaaccatagtgagagaagcttttaacatgc |
42855104 |
T |
|
| Q |
162 |
cctcctccaagcgttttgaaagattcttaatcctccttttctgcatttcattaattggctgctgatgccgttgcattaagatcacaaagctggaagttaa |
261 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42855103 |
cctcctccaagtgttttgaaagattcttaatcctccttttctgcatttcattaattggctgctgatgccgttgcattaagatcacaaagctggaagttaa |
42855004 |
T |
|
| Q |
262 |
aatgtaaaatatctattattgcggatcgacaagaatgagaaagaataccat-atatatcttatgcatatattatattgtatctgagtcaaaaaacaaaag |
360 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| | |
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|
| T |
42855003 |
aatgtaaaatatctattattgcggatcgacaagaatgagaaagaataccatgatatatcttatgcacatattatattgtatctgagtcaaaaaacaaagg |
42854904 |
T |
|
| Q |
361 |
caggtcgaacatccattgacagagagtaatctaattgacttaaggacatatatactgcagtgatcctaatcaataactttgatagaatggcctcataagt |
460 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
42854903 |
caggtcgaacatccattgacagagagtaatctaattgacttaaggacatatatactgcagtgatcctaatcaataactttgatagaatggcctcacaagt |
42854804 |
T |
|
| Q |
461 |
tctaagttaagcaatatctatat |
483 |
Q |
| |
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||||||||||||||||||||||| |
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|
| T |
42854803 |
tctaagttaagcaatatctatat |
42854781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 64 - 483
Target Start/End: Complemental strand, 42848657 - 42848225
Alignment:
| Q |
64 |
aaaatttaaattaaggaagacttaaatccctcccaatagtgnnnnnnnn-tgaaaatgagatccagaaaaaaccatagtgagagaagcttttaacatgcc |
162 |
Q |
| |
|
|||||| |||||||||||||||| ||| ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
42848657 |
aaaattaaaattaaggaagacttgaatacctcccaatagtgaaaagaaaatgaaaatgagatcaagaaaaaaccatagtgagagaagcttttaacatgcc |
42848558 |
T |
|
| Q |
163 |
ctcctccaagcgttttgaaagattcttaatcctccttttctgcatttcattaattggctgctgatgccgttgcattaagatcacaaagctggaagttaaa |
262 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| |||||||||||||| ||||||| |||||| ||||||||||||||||||||||||||| |||| |
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|
| T |
42848557 |
ctcctccaagcgttttgaaagatccttaatcctccttctctgcatttcattagttggctgttgatgcagttgcattaagatcacaaagctggaaggtaaa |
42848458 |
T |
|
| Q |
263 |
atgtaaaatatctattattgcggatcgacaagaatgagaaagaatacc---atatatatcttatg--catatattatattgtatctgagtcaaaaaaca- |
356 |
Q |
| |
|
||||||| ||| ||||||||| |||||||||||||| |||||||| | ||||| |||| ||| |||||||||||||||||| ||||||||||| | |
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|
| T |
42848457 |
atgtaaagtatttattattgctaatcgacaagaatgaaaaagaatatcatgatatacatctcatgcacatatattatattgtatcagagtcaaaaaaaaa |
42848358 |
T |
|
| Q |
357 |
------aaagcaggtcgaacatccattgacagagagtaatctaattgacttaaggacatatatactgcagtgatcctaatcaataactttgatagaatgg |
450 |
Q |
| |
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||||||||| ||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42848357 |
aaaaacaaagcaggtggaacacccgtagacagagagtaatctaattgacttaaggacatatatactgcagtgatcctaatcaataactttgatagaatgg |
42848258 |
T |
|
| Q |
451 |
cctcataagttctaagttaagcaatatctatat |
483 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |
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|
| T |
42848257 |
cctcataagttctaagttaagcaataactatat |
42848225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 116 - 483
Target Start/End: Complemental strand, 42856787 - 42856422
Alignment:
| Q |
116 |
aaatgagatccagaaaaaaccatagtgagagaagcttttaacatgccctcctccaagcgttttgaaagattcttaatcctccttttctgcatttcattaa |
215 |
Q |
| |
|
||||||||||||||||||||| | ||||||| |||||| |||| |||||| |||| |||||||||||||| ||||| ||| ||||||||||||| ||| |
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|
| T |
42856787 |
aaatgagatccagaaaaaaccttcgtgagagcagctttgaacaggccctcatccaggcgttttgaaagatctgtaatcttccctttctgcatttcagtaa |
42856688 |
T |
|
| Q |
216 |
ttggctgctgatgccgttgcattaagatcacaaagctgg-aagttaaaatgtaaaatatctattattgcggatcgacaagaatgagaaagaataccat-a |
313 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| ||| || |||||||| ||| | |
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|
| T |
42856687 |
ttggctgttgatgccgttgcattaagatcacaaagctggaaaggtaaaatgtaaaatatctattattg--------ttagatcgaaaaagaatatcatga |
42856596 |
T |
|
| Q |
314 |
tatatcttatgcatatattatattgtatctgagtcaaaaaacaaaagcaggtcgaacatccattgacagagagtaatctaattgacttaagg----acat |
409 |
Q |
| |
|
|||||||| ||| ||||||||||||||| | |||| |||| |||| |||| ||||| || | || |||||||| ||||||||| || | | || |
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| T |
42856595 |
catatcttacgcacttattatattgtatctcaatcaagaaaccaaaggaggtggaacaataataggcaaagagtaatgtaattgactcaatgatatatat |
42856496 |
T |
|
| Q |
410 |
atatactgcagtgatcctaatcaataactttgatagaatggcctcataagttctaagttaagcaatatctatat |
483 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||| |||||| |
|
|
| T |
42856495 |
atatactgcagtgatcctaatcaataactttgacagaatggccttgcaagttcaaagttaagcaataactatat |
42856422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 116 - 483
Target Start/End: Complemental strand, 42860864 - 42860489
Alignment:
| Q |
116 |
aaatgagatccagaaaaaaccatagtgagagaagcttttaacatgccctcctccaagcgttttgaaagattcttaatcctccttttctgcatttcattaa |
215 |
Q |
| |
|
||||||||||||||||||||| | ||||||| |||||| |||| |||||| |||| |||||||||||||| ||||||||| ||||||||||||| ||| |
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|
| T |
42860864 |
aaatgagatccagaaaaaaccttcgtgagagcagctttgaacaggccctcgtccaggcgttttgaaagatctgtaatcctccctttctgcatttcagtaa |
42860765 |
T |
|
| Q |
216 |
ttggctgctgatgccgttgcattaagatcacaaagctgg-aagttaaaatgtaaaatatctattattgcggatcgacaagaatgagaaagaataccat-a |
313 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| ||| || |||||||| ||| | |
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|
| T |
42860764 |
ttggctgttgatgccgttgcattaagatcacaaagctggaaaggtaaaatgtaaaatatctattattg--------ttagatcgaaaaagaatatcatga |
42860673 |
T |
|
| Q |
314 |
tatatcttatgcatatattatattgtatctgagtcaaaaaacaaaagcaggtcgaacatccattgacagagagtaatctaattgacttaagg-------- |
405 |
Q |
| |
|
|||||||| ||| |||||||||||||||| | |||| |||| |||| |||| ||||| || | || |||||| | ||||||||| || | |
|
|
| T |
42860672 |
catatcttacgcacatattatattgtatctcaatcaagaaaccaaaggaggtggaacaataataggcaaagagtattgtaattgactcaatgatatatat |
42860573 |
T |
|
| Q |
406 |
------acatatatactgcagtgatcctaatcaataactttgatagaatggcctcataagttctaagttaagcaatatctatat |
483 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||| |||||| |
|
|
| T |
42860572 |
atatatatatatatactgcagtgatcctaatcaataactttgacagaatggccttgcaagttcaaagttaagcaataactatat |
42860489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 42855310 - 42855207
Alignment:
| Q |
1 |
gaggaagaagtttgaaagcaccttgtaatttattacttctagaaacataaatctgagtattagaaaatttaaattaaggaagacttaaatccctcccaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42855310 |
gaggaagaagtttgaaagcaccttgtaatttattacttctagaaacataaatctgagtattagaaaatttaaattaaggaagacttaaatccctcccaat |
42855211 |
T |
|
| Q |
101 |
agtg |
104 |
Q |
| |
|
|||| |
|
|
| T |
42855210 |
agtg |
42855207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 71 - 482
Target Start/End: Complemental strand, 42853304 - 42852887
Alignment:
| Q |
71 |
aaattaaggaagacttaaatccctcccaatagtgnnnnnnnn-tgaaaatgagatccagaaaaaaccatagtgagagaagcttttaacatgccctcctcc |
169 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| | || ||| ||||||||||||||| ||| ||||||| ||||||||| |||||||||| |
|
|
| T |
42853304 |
aaattaaggaagatttaaatccctcccaatagtgaaaagaaaattaacatgggatccagaaaaaaccttagagagagaatcttttaacaggccctcctcc |
42853205 |
T |
|
| Q |
170 |
aagcgttttgaaagattcttaatcctccttttctgcatttcattaattggctgctg-atgccgttgcattaagatcacaaagctggaagttaaaatgtaa |
268 |
Q |
| |
|
| || ||||||||||| ||| ||||||||||||||||||||| ||| ||| | || ||||||||||| ||| ||| || ||||||||| |||||||| |
|
|
| T |
42853204 |
aggcattttgaaagatccttgatcctccttttctgcatttcactaactgg-tattgcatgccgttgcaataacatctcatagctggaaggtaaaatgt-- |
42853108 |
T |
|
| Q |
269 |
aatatctattattgcggatcgacaagaatgagaaagaataccat-atatatcttatgcatatattatattgtatctgagt--caaaaaacaaaagcaggt |
365 |
Q |
| |
|
|| || | | |||||||||||||| |||||||| | | |||||||||||||| ||||||||| |||||| || ||||||| |||||| || |
|
|
| T |
42853107 |
tattgctgtcaagtaaaatcgacaagaatgaaaaagaataacgtgatatatcttatgcacatattatatcgtatcttcgtaaaaaaaaaccaaagcatgt |
42853008 |
T |
|
| Q |
366 |
cgaacatccattgacagagagtaatctaattgactta----aggacatatatactgcagtgatcctaatcaataactttgatagaatggcctcataagtt |
461 |
Q |
| |
|
||||| ||| |||||||| ||||||||| |||||| | ||||||| ||||| ||| |||| |||||||||||||||||||||||| | ||||| |
|
|
| T |
42853007 |
ggaacacacatagacagagattaatctaatcgacttaattcatgacatatgtactgtagtaatccaaatcaataactttgatagaatggcttgccaagtt |
42852908 |
T |
|
| Q |
462 |
ctaagttaagcaatatctata |
482 |
Q |
| |
|
| ||| ||||||||| ||||| |
|
|
| T |
42852907 |
caaagataagcaataactata |
42852887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 69; Significance: 9e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 118 - 395
Target Start/End: Complemental strand, 27383 - 27095
Alignment:
| Q |
118 |
atgagatccagaaaaaaccatagtgagagaagcttttaacatgccctcctccaagcgttttgaaagattcttaatcctccttttctgcatttcattaatt |
217 |
Q |
| |
|
|||| |||||||||||||| ||| ||| | |||||||||||||||||||| |||||||| ||||| ||||||||||||||| || |||||| ||||| |
|
|
| T |
27383 |
atgatatccagaaaaaaccttagaaggagcattttttaacatgccctcctccaggcgttttgcaagatccttaatcctccttttttgaatttcactaatt |
27284 |
T |
|
| Q |
218 |
ggctgctgatgccgttgcattaagatcacaaagctggaagttaaaatgtaaaatatctattattgc---------ggatcgacaagaatgagaaagaata |
308 |
Q |
| |
|
||||||||||||||| | | ||| || || ||||| || ||||||||||||||| |||||||| ||| |||||||||| |||||||| |
|
|
| T |
27283 |
ggctgctgatgccgtcgaaataacgtctcacagctgcaatgtaaaatgtaaaatattaattattgccattatgtaaaatcaacaagaatgaaaaagaata |
27184 |
T |
|
| Q |
309 |
cca-tatatatcttatgcatatattatattgtatctgagtc-aaaaaacaaaagcaggtcgaacatccattgacagagagtaatctaat |
395 |
Q |
| |
|
||| |||||||||||||| |||||| ||||||||| | | ||||||| ||||||||| ||||| || ||||| |||||||||||| |
|
|
| T |
27183 |
ccacgatatatcttatgcacatattacattgtatctcggacaaaaaaaccaaagcaggtggaacactaatagacagtgagtaatctaat |
27095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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